Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          ------->GAMYB                                                                     ----------->RAV1(1)                                                                  --------->TOE2(3)                                                                 ------>ZmHOX2a(2)                                                                <------ZmHOX2a(2)                                                               <---------ARR14(2)                                                               --------->ARR14(3)                                                               <---------ARR14(3)                                                               <---------ARR11(3)                                                               --------->ARR14(2)                                                               --------->ARR11(3)                                                              <---------GLK1(1)                                                              --------->GLK1(1)                                                             ----------->ARR10                                                            <------ZmHOX2a(1)                                                         ========================RAV                                                         <-----------RAV1(2)      <---------ARR11(3)                                                        ===============HOX2a_HOX2a--------->ARR11(3)                  --------->ZAT6                        ================HOX2a_HOX2a                 <---------YAB1                         ------>ZmHOX2a(1)       <---------YAB1          <---------MYB52(1)                        <-----------GT1------>ZmHOX2a(1)     --------->WRKY18(1)   atgcaaactacagtttgttatcagtatgtctatgcttcttgggcttagtttgtttttcctcaggagatcctcaacagaggtgaagatagtggtcatggtt  19907000                                                                     <---------ANAC58                                                                  <--------P                                                                 <---------ANAC58                <---                                                                 <-------GAMYB                   <---                                                                <------MYB46(1)               -------                       <---------ANAC58                         <------MYB83                 <-------                       <---------ANAC58                         <---------MYB46(3)          <--------                    --------->GLK1(1)                          <---------AtMYB61          <---------ARR14(2)            <------ZmHOX2a(1)     --------->GLK1(1) <------ZmHOX2a(1)<---------ANAC58     --------->ARR14(2)       -------->ZAP1<---------GLK1(1)  <-----------HVH21       --------->MYB59<------ZmHOX2a(1)  <---     <---------WRKY18(1)      ----------->GT1   <---------TOE1(1)<---------ANAC58         --------->GLK1(2)   tctattttgaccgaggagagagatttcttgaggggtatttccatcagggaacgaggaatactggtttggttgcttaaccaggacctctcaagaatccggg  19907100                                                                                           --------->At5g28300                                                                                          --------->LBD16                                                                                          -----------                                                                                         --------->LBD16                                                                                        <---------ANAC46                                                                                        <---------LBD16                                                                                     ----------->HVH21 ------ANAC58                          <-------TEIL                                <---------ZAT2 ------ANAC46                         <--------P                                   --------->ZAT2 -->LBD16                          <---------TOE2(3)                               --------->At4g35610 --LBD16                    <-----------HVH21                                      <---------At4g35610 -LBD16                  <---------ANAC58                                        <-----------RAV1(2) ------ANAC58            <---------ANAC58                 ----------->HVH21    <-----------HVH21 ----   cttggaagtcaatactctcttgatcaagcttgtcatcgaggtagatggtttcgataagagttgacattgggacgcggtttgagtcaggtgcccggtaaca  19907200                                                                                 ---------->DOF2                                                                              ------>ZmHOX2a(2)                                                                             <------ZmHOX2a(2)                                                                            <---------AGP1                                                                            --------->ARR11(3)                                                                            <---------ARR11(3)                                                                   --------->RAP2.6(3)             --                                                     --------->ZAT18    ---------->DOF2            --                                                  --------->At4g35610 <---------------------WRI1   <-       <---------ANAC55(2)                        <---------At4g35610--------->LBD16               <-       --------->ANAC58                        <------ZmHOX2a(2)   --------->DEAR3(2)         ------- >GT1  --------->ANAC58         <---------YAB1<---------AGP1      --------->MYB52(1)          ------- ------->GT1      <----------DOF2          <--------P<-------TEIL--------->MYB52(1)         <--------   agtgaaatcaagtaagtagactttgactcttgttctaattctttggtagatcagatgcactactagcaaaccggcaaagatctcaaagacagaaacacct  19907300            <-----------HVH21           <---------bZIP60(1)           --------->bZIP60(1) ------->ZAT2   <---------ZAT2                                                      <---------TOE1(3) ------->At4g35610                                                                  <---------TOE2(3) --------ZAT2   --------->ZAT2                                                      --------->MYB59 --------At4g35610     <---------At4g35610       <---------ANAC46        <----------DOF2 -->At4g35610   --------->At4g35610    <------MYB83  <---------CCA1(2)   <---------DAG2 ---->RAV1(2)   <---------At4g35610    <------MYB46(1)                <-----------GT1   <-------TEIL -ALFIN1--------->ALFIN1               ----------->GT1          <-------TEIL    <----------DOF2   <--   gagctgagaagtgttgtcagctctgagatgctcatggagattggtgaaactctgtgtatcgtttgattcatttcactttattcttttaggttcaagtttt  19907400                                  <---------ANAC58                                  <---------ANAC46                                  <---------ANAC55(1)                                  <---------ANAC58                             <----------DOF2                            <---------ANAC58                            <---------ANAC46                           <------NtERF2                                                         ----                    <---------ICU4--------->ANAC55(2)                                            ----                <---------------AGL15                                                           -----                --------------->AGL15                                                           -----               ----------------->AGL1                                                   <---------At5g28300               <-----------------AGL2                                                  <-----------GT1             <-----------GT1<---------ANAC58                                        <---------GLK1(1)       <---------WOX13(1)<---------RAP2.6(2)                                        --------->GLK1(1)      <------------CBF<---------YAB1      --------->CCA1(2)                       <------ZmHOX2a(1)     --------->ATHB12 <-----------RAV1(1)<---------ARR11(3)             <---------MYB46(3)    <------    <---------YAB1 --------->ICU4 <---------ANAC55(2)  ------->TEIL     <-----------RAV1(1)  <------- -------AtLEC2 <-----------------AGL1    --------->ARR11(3)  --------->YAB1    <---------At4g35610---   tcatggatgattgattttcccattatggtggcttttacgtgaagatataagagaatggacttatcatgtggaagttgttgcagaggatttcactgcgtta  19907500                                                               <---------ANAC58                                                     <---------O2                                                     --------->O2         <---------AHL20(2)                          --------->ANAC58 ----->ANAC58                                        --------->ANAC55(1) ----->ANAC58                                        --------->ANAC58 ---->MYB46(2)                                       --------->ANAC46 ---->MYB59                                          --------->ANAC55(2) ---MYB52(1)          <----------DOF2              <---------ALFIN1 ----HVH21  <-----------GT1    <----------DOF2<-----------GT1  <---------ANAC58    <---------MYB59 --------->CBF  <---------At4g35610  ------------>CBF<---------ANAC55(2)          --------->At4g35610   ggcaatgctatttttttcagcattctttatgtgctttctaacaattagtcacaacacgtcttcttacttgtctgattagttaagagctaacttgggtcta  19907600                               <------------CBF                              --------->ATHB12                              -------->ATHB1                              <---------ICU4                  <---------MYB55(2)                  --------->MYB46(3)                                                               <-                 ------>MYB46(1)                                                                  <--                 >>>>>>>>>>>>>>>>>LFY                                                             ---                 ------>MYB83 --------->ATHB51                                                 <-----                --------->ANAC58   <---------YAB1                   <---------------AGL15      ------                --------->ANAC58 --------->YAB1                     --------------->AGL15      ------                --------->ANAC46<---------YAB1                     ----------------->AGL3      ------            <-----------GT1  --------->ICU4         --------->AHL20(2)                         ------           ---------->DOF2   <---------YAB1 --------->ICU4         ----------------->AG        <-----        --------->TOE2(3)    <---------AHL20(2)     <---------AHL20(2)                        <------       --------->ANAC46      --------->AHL20(1)  --------->YAB1    <-----------------AGL1     <------       --------->ANAC58      <---------ATHB51  <---------WOX13(1)  ----------------->AGL1     -------       --------->ANAC58--------->At5g28300  <---------YAB1      ------>ZmHOX2a(1)             <------    <---------REM1(2) ----------->GT1<------------CBF       <---------ARR11(3)    --------->YAB1 <---   agggtttacacgttaaaccagccactgtaaaattattgtaattgtgttgattaataaaacaaaatccttcccaaattttgaaaatcatacattgcaatta  19907700    --------->AHL20(1)    <---------YAB1    <---------AHL20(2)   --------->AHL20(2)   --------->YAB1  <---------AHL20(2) --------AHL20(2) -------AHL20(2) ------>AHL20(2) ---HAHB4 --->ATHB51 -->ATHB1                                                                                     <------ --->AHL20(2)                                                                                <------- --->YAB1                                                                                --------->ARR11(3) ----ICU4                                                                          ------->MYC3 ---YAB1                                                             <---------ANAC46    <---------ARR11(3) ---ATHB51                                                    <-------GAMYB        <-------MYC3 -->ICU4                                                     <---------MYB46(3) <---------ANAC58 ---ATHB12         --------->DAG2                            --------->MYB52(2) <---------ANAC58 <--- ------YAB1       ---------->DOF2                        <---------MYB46(3)     <---------AtLEC2 ----   ttaaataatattgtaagagaaaaagtgagactaattccaaagttgttatgtcaatttgtttgttcgttgttgtttgtaatttgcatgtgaagagcttcgg  19907800                                                                                              -------                                                                                            <--------                           ------->GAMYB                                                 ----------->HVH21                          <---------MYB52(2)                                            <---------WOX13(1)                        ----------->RAV1(1)                                         <---------MYB52(1)              --------->CCA1(2)                                                    --------->LBD16             <---------ARR14(2)                                                    <---------At4g35610       =============================RAV                                          --------->ZAT18       <-----------RAV1(2)--------->MYB46(3)             <----------DOF2         <---------LBD16<---- <------ZmHOX2a(1) <---------At4g35610              <---------ANAC58           --------->ARR14(2)---- ---ANAC46   ---------->TaMYB80                     <---------ANAC58           <---------ARR14(2)<--- --LBD16     --------->ARR14(2)                   <------MYB83         --------->ZAT6--------->WRKY38(1) ------ARR14(2)    --------->At4g35610            <------MYB46(1)     <---------ZAT14----------->HVH21 ----->ARR14(2)    --------->ZAT2               <--------P     <---------At4g35610 --------->At4g35610   ataggataagcaggggatatgagctgcaacaaacaatactctctcaaggggttggcttcctttgcaactgattacactgcgagtccggtgactgactgat  19907900  Previous    Next  AGI:  At5g49070.1    Description:  beta-ketoacyl-CoA synthase family protein. Identical to Probable 3-ketoacyl-CoA synthase 20 (KCS20) [Arabidopsis Thaliana] (GB:Q9FH27); similar to CUT1 (CUTICULAR 1), acyltransferase/ catalytic [Arabidopsis thaliana] (TAIR:AT1G68530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44448.1); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392); contains InterPro domain Thiolase-like; (InterPro:IPR016039); contains InterPro domain FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601); contains InterPro domain 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IP Range:  from: 19905977    to: 19907371    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.