Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ANAC58                                        <---------ANAC46                      --------->ANAC58                                   --------->YAB1                         --------->ANAC58                                  <---------YAB1                          --------->ANAC58                                <---------ICU4                     <---------------AGL15                                -------->ATHB1                     <---------DAG2                                --------->YAB1                     --------------->AGL15                               <---------YAB1                     ----------------->AG                               --------->AHL20(1)                 <-----------------AGL1                               --------->ICU4                     ----------------->AGL1                               --------->AHL20(2)                 <-----------------AGL3              <-----------GT1  <---------AHL20(2)  <---------TOE2(3)      --------->ANAC46         <----------DOF2 --------->TOE2(3)         --------->MYB59----------------->AGL2         <---------DAG2 <---------ANAC55(2)        <---------TOE1(3)<----------DOF2    <-----------GT1  <------ZmHOX2a(2)  <---------ANAC58          <-----------------AGL2 -------->AHL20(2)  <---------ARR11(3)  <---------ANAC58        <-----------GT1          --------->YAB1   atatatatacccttttttaccagatcacctaaaattattatagcttgtttttttaggtaaactatctaaccttttcaggcaagaaatgcaataacattct  19824600                                   <-----------GT1                                <---------RVE1(1)                               <---------ARR11(3)                               --------->ARR11(3)                               --------->AHL20(1)     --------->ARR14(2)                               <---------AHL20(1)     --------->ARR11(3)                           ---------->DOF2            <---------ARR11(3)                        ----------->RAV1(1)          --------->RVE1(1)                     ----------->RAV1(1)             --------->CCA1(1)                     --------->ANAC46              --------->YAB1                         ---------->DOF2                    --------->MYB46(3)<---------CCA1(2)                                 <---------YAB1                 <-----------GT1<---------CCA1(1)  --------->AHL20(2)               --------->YAB1              --------->YAB1  --------->YAB1    --------->YAB1              --------->TOE2(3)   atccaaattacaccaatattcacccacaacaaagatatttctatcttgaacaataatatcttctaccatcagtaatttcattagtatcatatgaaagaat  19824700                                                                               ------->TEIL                                                                         --------->GLK1(2)                                     ---------->DOF2                     --------->ARR14(2)                                  ----------->RAV1(1) <---------CCA1(2)  <---------ARR14(2)        --------->YAB1  --------->YAB1     ----------->GT1              <---------GLK1(2)         --- <-----------GT1   --------->WRKY38(1)   ---------->DOF2            ---------->DOF2      --------->ATHB12   gagtaacctttcaaaattttgttgactcataaacaacaacaaagaaagaaaaactcatatcaagaatggataaagaatctggacctgagcatgtttggct  19824800                                                                                       <---------YAB1                                                                                     --------->YAB1                      <---------ZAT18                                               <---------YAB1                    --------->ANAC46                                              <---------MYB46(3)                    --------->ANAC58                                  <---------------AGL15                    --------->ANAC58                                  --------------->AGL15                <---------ALFIN1                                     <-----------------AGL2          --------->ALFIN1                                 --------->YAB1         ----------->GT1       <------ZmHOX2a(1)  <----------DOF2        --------->YAB1      <-----------------AGL3         - -------->HVH21<---------REM1(2)     <---------ANAC55(2)<----------DOF2 <----------DOF2--------->ICU4   ctgacataaggagtgtctccacagggaactttgtgaatcacatgaaacaattcatcatctttcataagattgctctttatggagttgttataattgttct  19824900                                                                ---------->DOF2                                                             --------->AHL20(2)                                                             --------->YAB1                                                         <---------AHL20(1)                                                         --------->AHL20(2)                                                         <---------AHL20(2)                                                      --------->ATHB51                                                      <---------ICU4                 *TSS                                                      <--------HAHB4        --------->ETT(2)                                                     --------->ICU4         <---------ETT(2)                                                     <---------ATHB51     --------->At4g35610                                                     --------->AHL20(2)   <---------At4g35610                                         <-----------GT1 --------->AHL20(1) ----------->HVH21                                        ---------->ID1--------->YAB1--------->ARR11(3)                                ------>ZmHOX2a(1)    <---------ATHB12    <---------MYB46(3)           <---------GLK1(2)<-----------GT1 <----------DOF2 <---------YAB1<-------GAMYB          ---- --------->ID1         <----------DOF2 <-----------GT1<--------ATHB1<---------ARR11(3)  ---------->DOF2   tcgtcttcttcaagcttctctccatctttttttcctctgtttttctcttttctcaataattaattataaagatgtctgttgacaggctgggaaagacaac  19825000                                                                                          <---------ANAC46                                                                                          <---------O2                                                                                      <-----------TGA1                                                                                      <-----------HVH21                                                                                     <---------TGA1a                                                                                     --------->O2                                                                                     --------->ANAC58                                                                                     --------->bZIP60(2)                                                                                     --------->bZIP60(1)                                                                                     --------->TGA1a                                                                                     <<<<<<<<<<HY5                                                                                     <---------O2                                                                                     <---------ANAC55(2)                                                                                     --------->ANAC46                       <-------TEIL                                                  --------->ANAC58                       <---------TOE2(2)                                             <---------bZIP60(1)                       ------->TEIL                                                  --------->ANAC55(1)          ------>ZmHOX2a(2)                                                          --------->ANAC55(2)         <------ZmHOX2a(2)                                                          <-----------STF1        <---------ARR14(2)        <---------ZAT6                                   <---------ALFIN1        --------->ARR11(3)     <-----------GT1                                   <-----------HVH21        <---------ARR11(3)  --------->MYB52(2)                                   ------>NtERF2        <---------AGP1 <---------TOE1(2)                                      --------->ZAT2        --------->AGP1 --------->SPL7                                         --------->At4g35610        --------->ARR14(2)  <---------MYB46(3)                                <---------HSFB2a(1)       <---------CCA1(2)  <---------MYB52(1)                                  <---------HSFC1(2) <---------ZAT18     <---------SPL7                                           <---------At4g35610 --------->ZAT14    <---------ANAC58                         <---------ANAC58 --------->HSFB2a(1) <---------ZAT14    <---------ANAC58                ------------>CBF    ----------------------->TaNAC69(2) ----->AtMYB61     <---------------AtSPL3     ------->TEIL   <---------ANAC58 --------->HSFC1(2)   ctctgcactagatcttaaatatgcgtacgtttgttactgtaagaaatgaatttggacaatatttcgtctctgttcatagaagctgccacgtcacttggag  19825100                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                          <---------AHL20(2)                                                                                         --------->AHL20(2)                      --------->ANAC58                                                   --------->ICU4                ----------->HVH21                                                        <---------AHL20(2)        <---------ANAC55(2)              <---------YAB1                           --------->LBD16        --------->ANAC58       --------->ALFIN1         <----------DOF2          --------->ANAC55(2)        --------->ANAC58      ------->MYC3       <----------DOF2                 --------->ANAC46  <-      --------------->AGL15   <-------MYC3      <---------DAG2                  <---------LBD16<-----   <-----------GT1    --------->ANAC58 <-----------GT1---------->ID1        <----------DOF2   -------   acttcttaccacgtataggtgaacgagcaaaacgtgttgttttaccattgccttttgtcttttctacatttttggtgtcttttacggagtattaattagg  19825200                                                                                          <---------ANAC58     ------->GAMYB                                                                        ===========  <-----------GT1            =================RAV                                         <---------TGA1a -----ARR11(3)               <-----------RAV1(1)                                     <---------ICU4 ---->ARR11(3)              <---------TOE2(3)               <----------DOF2     <---------ATHB12 -MYB83                  XXXXXXXXXXXXXXXXXXXX>MIR857        ========================================bZIP_DOF ---------DOF2        <---------AHL20(2)    <---------WOX13(1)               --------->MYB46(3) -MYB46(1)     --------->GLK1(2)  <-----------RAV1(2) <---------TOE2(3)--------------->AtSPL8 -->MYB59     <---------GLK1(2)   <---------ANAC46   <---------At5g28300   ------->TEIL   <---------ANAC58   tctttaactgtctaaagattctatattttttatgttgcaggtatagattgactattacggttctttcgatgttcttgtacccatcaattctgacttgact  19825300                                                       <---------O2                                                       <---------ANAC46                                                   <-----------TGA1                                                   <-----------HVH21                                                  --------->ANAC58                                                  --------->ANAC46                                                  --------->O2                                                  <---------ANAC55(2)                                                  --------->ANAC55(2)            <---------AHL20(2)                    --------->REM1(1)       <---------------AGL15                      ===================================bZIP_DOF       --------------->AGL15                      <---------O2       ================================================================================MADS_MADS      --------->ANAC55(2)                         --------->bZIP60(2)                --------->ANAC58      <---------ANAC55(2)                         --------->bZIP60(1)                --------->ANAC58  <-------GAMYB                                   --------->TGA1a         ---------->DOF2  <-----------HVH21            --------->At4g35610<---------bZIP60(1)  --------------->AGL15       -- ----------->GT1               <---------At4g35610--------->ANAC58    ----------------->AG         -- =========MYC_MYB    --------->GLK1(2)           <-----------STF1     ----------------->AGL1     ----   actcggttacatattttagtgaaattcggttttagctaaaacttatactgctacgtcacttggagacttcttaccacaaaggtgaacgagcaaaacatgt  19825400                                      ------>ZmHOX2a(2)                                    --------->ARR11(3)                                    <---------ARR11(3)                               <----------DOF2                              --------->HSFB2a(1)                              <---------HSFB2a(1)            --------->O2                            --------->ARR11(3)               <---------O2               ----------->GT1<---------HSFC1(2)           ------>NtERF2 ------->AHL20(1)           <---------ARR11(3)------->TEIL <---------RAP2.6(3)                      - ------->ARR11(3)       ---------->DOF2   --------------->AtSPL8         --------->LBD16            < --->TEIL  <---------At5g28300--------->HSFC1(2)     ---------->DOF2     <-----------HVH21--------->GLK1(2)   atatattgactattacggtgtaaaaaaaaagaactttcgatcttcttgtacccattaatgccgacttgactactccgtcaaattttagcgaaattcggtt  19825500  Previous    Next  AGI:  At5g48850.1    Description:  male sterility MS5 family protein. similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT1G04770.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61444.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR2 (InterPro:IPR013105); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 19822663    to: 19824985    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.