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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
--------->
ANAC58
---------->
DOF2
--------->
DAG2
--------->
LBD16
<------
ZmHOX2a(2)
--------->
DAG2
<---------
LBD16
<---------
ARR11(3)
---------->
DOF2
<-----------
GT1
---------->
DOF2
--------->
ALFIN1
--------->
TOE2(3)
-----
->
DOF2
<---------
At5g28300
--------->
ARR11(3)
---------->
DOF2
----------->
GT1
------->
TEIL
---------
caacatttttacc
ctgaaaatcgcaaaagatcagagagagagagactgaaaaggaatagagagtggggaaaagggaaagcac
cttagaacggataaggtc
19362000
--------->
At4g35610
<---------
YAB1
<---------
ICU4
--------->
ANAC58
<---------
YAB1
--------->
ANAC46
--------->
YAB1
----------->
GT1
--------->
ANAC58
<---------
ICU4
--------->
ZAT14
------
--------->
ATERF1(1)
<---------
ATHB12
<---------
ZAT14
<------
ZmHOX2a(1)
---->
ETT(2)
------>
NtERF2
--------->
At4g35610
--------->
YAB1
<---------
MYB52(2)
>
DAG2
<---------
ATERF1(1)
<-----------
GT1
----------->
RAV1(2)
--------->
WOX13(1)
---------->
DOF2
gagagtttgggagacgccatcgatgagcgtttcacccttccatataacac
ctgaatcgaatcatcatccatcatcagagtagtaactaaagaggataaca
19362100
<--
----
-----
-----
-----
------
<---------
ETT(2)
------
--------->
ETT(2)
<------
<---------
ARR14(2)
--------->
ZAT2
--------->
AtMYB61
------->
TEIL
--------->
At4g35610
-------->
P
--------->
ARR14(2)
<---------
At4g35610
----------->
GT1
--------->
ANAC58
----------->
RAV1(2)
---------->
DOF2
--------->
ANAC58
--------->
CCA1(2)
--------->
GLK1(2)
--->
MYB46(3)
--------->
GLK1(2)
<------
ZmHOX2a(1)
---------->
DOF2
<------
ZmHOX2a(1)
atcgaatggaagaaagtagaatctac
catcgcagtcgaagaggaacgtatcgacagagtcaaagagagatttgaagttactggaggagagaagctgaggc
19362200
<---------
ALFIN1
--------->
ANAC58
<---------
ANAC58
--------->
ANAC46
<---------
ANAC58
--------->
LBD16
<-------
PIF5
<------
ZmHOX2a(1)
--------->
HSFB2a(2)
------->
PIF5
------>
NtERF2
----
NtERF2
<---------
HSFB2a(2)
*
TSS
--------->
ANAC58
-->
NtERF2
<---------
LBD16
<---------
TGA1a
---->
ANAC58
<<<<<<<<<
TBF1
--------->
TGA1a
---->
RAP2.3(2)
==============================================================================
---->
ANAC58
<---------------
AGL15
====================================
bZIP_DOF
--->
ATERF1(1)
--------------->
AGL15
--------->
DAG2
--------->
ANAC58
<
--->
RAP2.3(1)
<<<<<<<<<
TBF1
=========================
bZIP_DOF
----
---
ATERF1(1)
<<<<<<<<<
TBF1
---------->
DOF2
--------->
ANAC58
---------->
DOF2
gccat
tggaggagtgtcttcttcttcttcttctgggaattgatcactctggtaaagcacaattgg
cacgtccaaaacgacaccgttccatcgaaagaggc
19362300
<-----------------
AGL1
----------------->
AGL2
----------------->
AGL1
<-----------------
AG
--------->
At4g35610
<------
MYB46(1)
<------
MYB83
--------------->
AtSPL8
<---------
WOX13(1)
------->
MYC2
<------------
CBF
<-------
MYC2
--------->
ATHB12
<------
ZmHOX2a(1)
<-------
MYC3
--
<---------
YAB1
--------->
MYB59
<-------
MYC4
<---
===============================
MADS_MADS
<---------
REM1(1)
--------->
MYB52(1)
<---
------------
CBF
------------>
CBF
<-----------
GT1
------->
MYC3
--------->
YAB1
<--------
------->
RAV1(1)
<---------------
AGL15
<---------
TOE2(3)
----------->
TBP
<-----------
GT1
*
TSS
cacattgtgattggtgagcccaattaggaaggcctattttactaatgttgaagcacatgttgtactataaaaaaacagagtttattatctgtttcttt
gg
19362400
<
<-
<---
----
<---------
YAB1
<------
----------->
HVH21
<------
----------->
HVH21
----------->
TGA1
--------->
ALFIN1
--------->
HVH21
<---------
ANAC46
<---------
TOE2(3)
<------
------
ANAC58
<---------
LBD16
----------->
GT1
<------
ZmHOX2a(1)
------
ANAC58
<---------
ANAC46
--------->
DAG2
<-----------
RAV1(2)
--
DOF2
---------->
DOF2
<-----------
RAV1(1)
---------->
DOF2
<------
ZmHOX2a(1)
<-----
cttgacatgacaaatgtacaactgggagagaaagtcagtccgattgtgttggggatgacgatggcaaaagtagtaaataaggaagaaacaggaggggcgt
19362500
--------->
LBD16
<---------
HSFB2a(2)
--------->
HSFB2a(2)
--------->
At4g35610
---------
LBD16
--------->
ANAC58
<-----------
HVH21
--------
LBD16
--------->
GLK1(2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
------
ARR14(2)
<---------
MYB46(3)
--------->
ANAC58
--------->
TOE1(3)
----->
ARR14(2)
<---------
ZAT6
--------->
ARR14(2)
<---------
ARR11(3)
<---------
At4g35610
---
ANAC46
<---------
YAB1
<---------
ARR14(2)
--------->
DAG2
------->
TEIL
---
ANAC58
---------->
TaMYB80
<---------
GLK1(2)
---------->
DOF2
--------->
ATHB12
---
ANAC58
<------
ZmHOX2a(1)
<---------
REM1(1)
--------->
YAB1
--------->
TOE2(3)
-----
DOF2
<------
ZmHOX2a(1)
<-------
GAMYB
<------
ZmHOX2a(1)
--------->
AHL20(2)
--------->
ANAC46
tttcgggagaagaaggaggaat
atgagtgtgagttgttgttgtaggaatctgggcaagacaataaaaaaggcaataccttcacatcatttgcatctgaga
19362600
<---------
ARR11(3)
--------->
ARR11(3)
---------->
DOF2
<---------
DAG2
<---------
ARR14(2)
--------->
WRKY18(1)
--------->
ARR14(2)
--------->
ANAC58
<---------
CCA1(2)
--------->
ANAC58
<------
NtERF2
------>
ZmHOX2a(2)
<---------
DEAR3(1)
<------
ZmHOX2a(2)
--------->
TOE2(3)
------
agtcttggtgggagtctctatcgtcgtcgtatccaaagctcttcaatggagaccgatctcaagtcaacctttctcaacgtttattctgttctcaagtctg
19362700
------>
ZmHOX2a(2)
=====================
<------
ZmHOX2a(2)
<---------
CCA1(2)
======================
--------->
GLK1(1)
--------->
ARR14(2)
<---------
MYB52(1)
<---------
ARR14(2)
------>
ZmHOX2a(2)
<-----------
HVH21
------
------->
TEIL
<--------
P
--------->
WOX13(1)
-------
----------->
HVH21
<---------
ATHB12
<-------
GAMYB
--------->
YAB1
----------->
RAV1(1)
<---------
ICU4
<-----------
GT1
<---------
LBD16
<---------
ARR14(2)
--------->
At4g35610
----->
HVH21
--------->
ARR14(2)
<---------
CCA1(2)
<---------
GLK1(1)
<---------
At4g35610
accttcttcatgacccttccttcgaattcaccaatgaatctcgtctctgggttgatcgg
gtatctctctctcatcagtcagatcccacatatatatcctt
19362800
--------->
GLK1(2)
--------->
ALFIN1
<----------
DOF2
<---------
GLK1(2)
<---------
ARR14(2)
<---------
ANAC58
------->
GAMYB
------>
NtERF2
<---------
GLK1(2)
<-------
TEIL
--------->
REM1(1)
=
HOX2a_HOX2a
<---------
At4g35610
<---------
ANAC46
--------->
ETT(2)
=
HOX2a_HOX2a
--------->
At4g35610
<---------
ANAC58
<---------
ETT(2)
>
ZmHOX2a(1)
<----------
DOF2
------->
TEIL
---------->
ARF1
<--
-->
TOE1(2)
<----------
DOF2
<---------
ZAT14
<-----------
HVH21
--------->
MYB46(3)
<--
cgaatgctggctgattctctctttctttgcag
atgctggactacaatgtacgtggag
gtcagacttgtctacaacagcctctttctctctctctctctcg
19362900
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AGI:
At5g47760.1
Description:
ATPGLP2/ATPK5/PGLP2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 5); phosphoglycolate phosphatase/ protein serine/threonine kinase. similar to phosphoglycolate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT5G36790.2); similar to ATPGLP1/PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) [Arabidopsis thaliana] (TAIR:AT5G36700.2); similar to ATPGLP1/PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1), phosphoglycolate phosphatase [Arabidopsis thaliana] (TAIR:AT5G36700.1); similar to unknown [Populus trichocarpa] (GB:ABK96026.1); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain 2-phosphogly
Range:
from: 19360110
to: 19362265
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g47770.1
Description:
FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase. Identical to Farnesyl pyrophosphate synthetase 1, mitochondrial precursor (FPS1) [Arabidopsis Thaliana] (GB:Q09152;GB:Q42573;GB:Q8W504;GB:Q93Y84); similar to FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2), dimethylallyltranstransferase/ geranyltranstransferase [Arabidopsis thaliana] (TAIR:AT4G17190.1); similar to farnesyl pyrophosphate synthase [Malus x domestica] (GB:AAM08927.1); similar to Farnesyl pyrophosphate synthetase 1 (FPP synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase 1) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase
Range:
from: 19362399
to: 19364855
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.