Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------------->AGL15                              <---------AHL20(2)                              --------->ATHB51                              <--------ATHB1                              <---------ICU4                              --------->AHL20(2)                       <---------YAB1                             --------->ICU4                    --------->ANAC58                             <---------YAB1                   --------->DAG2                       --------->LBD16        --------->GLK1(2)--------->ANAC58                   <---------ARR14(2)         <---------ARR14(2)     --------->YAB1           <------          --------->YAB1   --------->YAB1     --------->ARR14(2)  --------->WOX13(1)         <------- --------ANAC58    --------->GLK1(2)<---------------AGL15    ---------->DOF2                 -------- --------ANAC58    --------->ARR14(2) XXXXXXXXXXXXXXXXXXXX>MIR851-5P<---------ATHB12         <-------   gtcttgtgcctatcacaacaaaatccgaataataatttctaaattcagaatccacaaaaaaaaaaaagcaatcaaaattgaaatcaaaaattcaattttt  19030800                                                         ------->TEIL                                                    --------->LBD16                                                  <---------LBD16                                               <---------GLK1(1)                                               <---------At4g35610                                               --------->GLK1(1)                                               --------->ZAT2                                               --------->At4g35610                                               <---------ZAT2                                           <---------HSFB2a(2)                                     --                                           --------->LBD16                                        ---                                           --------->ANAC46                                      ----                                           --------->HSFB2a(2)                                   <---                                          <---------LBD16--------->ARR14(2)                     <---- ---AHL20(2)                             <---------LBD16 <---------ARR14(2)                     <---- --AHL20(1)                         <---------GLK1(2)    <---------ARR11(3)                ---------- ->AHL20(2)                        <---------At4g35610  <---------CCA1(2)                --------->At4g35610 --AHL20(2)   <---------TOE2(3) <-------TEIL--------->LBD16 <----------DOF2      <---------DOF5.7(2)   tttatcaaatgaaatttagatttcaatttcaacatacagcttctcccggagctccggtgtatctttgggagtaccaagtgtgttaacgagtcgctgaaac  19030900                                --------->ANAC58                                --------->ANAC46                            <---------HSFB2a(2)                            --------->HSFB2a(2)                        --------->KAN4(2)                       <---------KAN4(1)                       <----------TaMYB80                       --------->KAN4(1)                     --------->AtMYB61                       --------->HSFC1(2)         <---------ARR14(2)                       --------->HSFB2a(1)        <-----------ARR10      <---------LBD16  <---------HSFC1(2)         --------->GLK1(2)    --------->GLK1(2) ---------->TaMYB80          --------->ARR14(2)   --------->ATERF1(1)<---------KAN4(2)           <---------ARR11(1)                             <--- ------->REM1(2)  --------->HSFB2a(2)   <---------ANAC58    --------->MYB46(3)           ------>ZmHOX2a(1) ------>ALFIN1    <---------HSFB2a(2)   <---------ANAC46 <---------ETT(2)           ------>ZmHOX2a(2) --->MYC3        ------>ZmHOX2a(2)      <---------ANAC58 --------->ETT(2)           ================= ----MYC3      --------->ARR11(3)  --------->MYB52(1)   ---------->ARF1           <---------ARR11(3) -----O2 <---------MYB52(1) <---------HSFC1(1)    ------->TEIL                    --------->ARR11(3) -----ANAC46   <---------AGP1   --------->ANAC58 <---------CCA1(2)          ===============HOX2a_HOX2a ->HVH21--------->LBD16<---------HSFB2a(1)       <---------ARR14(1)         ------>ZmHOX2a(1)  ------   gtggagactccggtattgatctggaatattccagaagcaacggcttgtgtcgaatcttgtcgaccaccattgaatttcctcgttgatcttcctcttcctg  19031000                                                         <---------AGP1                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                             <---------HSFB2a(2)                                             =====================HOX2a_HOX2a    <---------ARR11(3)                       --------->HSFB2a(2)    --------->ARR11(3)              <----------DOF2      <---------ARR11(3)   <---------CCA1(2)          --------->ARR14(2)         --------->ARR11(3) <---------------AGL15        <---------ARR14(2)   --------->DAG2 ------GLK1(2)             --------->ANAC46 <---------LBD16------>ZmHOX2a(2) =HOX2a_HOX2a             <---------HSFB2a(2)--------->LBD16 >ZmHOX2a(1)              --------->HSFB2a(2)------>ZmHOX2a(1)   ---------->DOF2   attctaaatcttgaaaactcatcttcttcgcgaaacctctttttttcctggaaaaattggatctacaaaaagattgagaaattggttatcggagttttct  19031100                                      ------>ZmHOX2a(2)                                      <---------ANAC46                                    <---------ARR14(2)                                 <------NtERF2                                 --------->ALFIN1                               <---------ANAC58                               <---------ANAC58                               <---------ANAC46                          <---------WRKY38(1)                          <---------WRKY12                                                      <----                         --------->WRKY18(1)                     --------->DAG2                 <----                        <-----------HVH21         --------->CCA1(2)                            <-----                 --------->MYB52(1) --------->ARR14(2)          ---------->DOF2                ------   ctaatctctgagaaaaaaaaaacgaaggtcaaggcgtggatcgtggagacagatagacgaagattgaaaagcgttttcgaaaaaatcccaaactgatttt  19031200                                                       <---------AHL20(2)                                                      <---------ARR11(3)                                                      <---------AHL20(1)            --------->At4g35610 <---------DAG2        --------->AHL20(1)                        <----         ---------->DOF2        <----------DOF2      ----------->TBP                            ----- -----YAB1--------->DAG2       *TSS       ------>ZmHOX2a(1)                           <---------ANAC58 -----AHL20(2)              <-----------GT1     <-----------GT1                       <---------ANAC58 ----AHL20(2)        --------->DAG2       <----------DOF2               ------>ZmHOX2a(1) ----------- --->AHL20(2)       ---------->DOF2     ------>ZmHOX2a(2)      <-----------GT1      <-----------GT1--   aattgagaagaaaaagctgagataaagttgtttcctttttgatccttttatttctatatatttagtaacctctcctcgtttctgtttttcttgccaaatt  19031300                                                                                            <--------                     <---------ARR11(3)                                              --------->ICU4          ----------->GT1                                                          <---------ICU4          <------MYB46(1)                                                          --------->ATHB51         <---------AtMYB61                                                         <--------ATHB1         --------->MYB59                                                           --------->YAB1  <------------CBF   --------->ARR11(3)                                            <---------AHL20(1) -----AHL20(2)     <---------TOE2(3)                 --------->ATHB12              --------->AHL20(2) ---->AHL20(2)--------->ATHB12                  <---------YAB1                    <---------ATHB12 ------>AG<------MYB83--------->GLK1(2)       <---------AHL20(2)                  --------->ICU4 ---------->CBF<------------CBF       <---------MYB52(1)                          <---------ATHB51---   aaacaattggtttggtttattgagattttggtttgggtcagtttgtttttatttttgatttgattcagttttagttaataaacaataatttttagttagt  19031400               <---------AHL20(1)               <---------AHL20(2)               --------->AHL20(1)              --------->AHL20(2)             <---------YAB1                                                    <---------AtMYB61      <---------AHL20(2)                                                       --------->MYB59    --------->AHL20(2)                                        --------->AHL20(2)<------MYB46(1)    --    <---------AHL20(2)                                        <---------AHL20(2)<------MYB83      <<< <---------AHL20(1)   <-----------GT1                      --------->YAB1  <------MYB83       <------ --------->AHL20(1) <---------AHL20(2)             ---------->DOF2    --------->AHL20(2)     -------- -MYB52(1)<---------YAB1         ----------->GT1----------->GT1       <---------AHL20(2)    --------- ------>AHL20(2)  <---------AHL20(2)    ----------->GT1  --------->AHL20(2)<------MYB46(1)  <--------   ttatatattaatatgattatattttttctcaatatgtgtaaatagttaaaatgtaaagttttaataaaacatttatttggtttggtttagttcagataca  19031500                                                      <---------ZAT18                                                      ------>NtERF2                                                      --------->ABI4(2)                             <                                                   <------MYB83                                ------                                                   <------MYB46(1)                            -------                                                   <---------ANAC58                         ---------                                                   <---------ANAC58                      <---------ICU4   <---------ATHB12                               --------->MYB46(2)                    <---------ATHB51 ------->YAB1                                     <---------DEAR3(1)                    --------->ICU4 <<<<<<ARR2                                       --------->MYB52(2)      <---------TOE2(3)<---------YAB1 -TEIL   --------->AHL20(2)                   <------MYB46(1)       --------------->AGL15--------->YAB1 ->CCA1(2)                       <-----------GT1  <---------MYB46(3)<---------------AGL15-------->HAHB4 >ARR14(2)                 ----------->GT1    <------MYB83<---------MYB52(1)          --------->YAB1< -ARR14(2)                <---------TOE2(3)  --------->MYB59     <-----------GT1  ----------->GT1  --   atcaaatcagtttatataagattccactacggtttaaacagttcaatttggttcggtgcccttagtttaactattttaggtgaaagtttaataatgaaaa  19031600                        ----------->GT1                    --------->ARR14(2)                    --------->KAN4(2)                    <---------ARR14(2)                   --------->HSFB2a(1)                   <---------KAN4(1)                   <----------TaMYB80                   <---------HSFB2a(1)                   --------->KAN4(1)                  ----------->ARR10          --------->ANAC58          <xxxxxxxxxxxxxxxxsmallRNA(s)        <xxxxxxxxxxxxxxxxsmallRNA(s)        <xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                <xxxxxxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                               <----------DOF2  <xxxxxxxxxxxxxxxxsmallRNA(s)    <---------YAB1                               --------->ATHB12 <---------AGP1   <---------ARR14(2)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------MYB46(1)   --------->ARR14(2)                                --------->ANAC55(2) --->DAG2 --------->ANAC58      ----------->GT1                     <---------ANAC55(2)xxxxxxxxxxxxxx --->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)                            <---------ARR14(2)  <---------ANAC58 >YAB1 <---------ZAT18<---------LBD16                         ------->GAMYB   <---------YAB1 ------MYB83      <---------KAN4(2)                        <-----------GT1 <---------AHL20(2)      <- ------->MYB59    ---------->TaMYB80                <-------TEIL --------->ARR14(2)  <---------ANAC58   gtaggtctgggcacgaagcgaatattcggaaaaattgtgatatttgttattcgattcgttttaaccgaatacttgattttatgatttgctttgattcgaa  19031700  Previous    Next  AGI:  At5g46860.1    Description:  VAM3 (syntaxin 22); SNAP receptor. Identical to Syntaxin-22 (SYP22) [Arabidopsis Thaliana] (GB:P93654); similar to SYP23 (syntaxin 23), SNAP receptor [Arabidopsis thaliana] (TAIR:AT4G17730.1); similar to SYP23 (syntaxin 23) [Arabidopsis thaliana] (TAIR:AT4G17730.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN75135.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 19029248    to: 19031231    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.