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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                        --------->ANAC58
                                                                                        --------->ANAC58
                                                                                    <---------bZIP60(1)
        ------>MYB46(1)                                                             --------->bZIP60(1)
<------NtERF2      <---------GLK1(2)                                      --------->ANAC58
----ZmHOX2a(1)  --------->YAB1 --------->TOE2(3)    <---------GLK1(2)     --------->ANAC58
>RAV1(1)------>MYB83    ----------->GT1        <-----------GT1 --------->ANAC46----------->GT1   <--
 
ggaggcaaaccaatctctctcatattcttgtaaaacttaaatgccaaatttaactgattctcttccacgagaatggcaagaacagtgacataagccttct  18712600
                                                                                                ----
                  --------->TOE2(3)                                                             <---
           --------->YAB1                                                                      <----
          <---------ATHB12                                                                    ------
          <<<<<<<<<ARR2                                                                       <-----
    ======================HOX2a_HOX2a   ---------->DOF2                                 --------->ANAC58
    <------ZmHOX2a(2)     ----------->GT1        --------->MYB52(1) --------->AtMYB61   --------->ANAC58
  <------ZmHOX2a(1)------>ZmHOX2a(1) --------->TOE2(3)          <---------ETT(1)      ---------->DOF2
-------STY1(2) <---------ARR11(3)    --------->TOE1(3)       ------->TEIL --------->ANAC46    <-----
 
ggctaggatcacaatcaaaatccttcattttgtgaaaaacccttaaagaatcaaacggcctatgaacccgaccataccctcgacatatcgaaagcaatat  18712700
                                                --------->At4g35610
                                                --------->ZAT2
                                                <---------ZAT2
                                                <---------At4g35610
                                           ------>ZmHOX2a(2)
                                          <------ZmHOX2a(2)
                                         <-----------ARR10
                                         --------->ARR14(2)
                                         --------->AGP1
                                         <---------ARR14(3)
                                         --------->ARR14(3)
                                         <---------GLK1(2)                          <---------ARR11(3)
                                         --------->ARR11(3)                   --------->TOE2(3)
       --------->MYB46(3)                <---------ARR14(2)                   --------->TOE1(3)
----->ARR11(3)                           <---------ARR11(3)                 -------->P
------ARR11(3)                          <---------CCA1(2)                   ------>MYB46(1)
-----CCA1(2)                           ----------->ARR10                    ------>MYB83
--->AHL20(1)                       --------->WOX13(1)             --------->At4g35610
----ARR11(3)                      --------->MYB46(3)        --------->ICU4--------->AtMYB61     ----
----AHL20(1)           --------->YAB1 --------->YAB1 <----------DOF2      <---------MYB59  <--------
 
atcttcactaacaacacaattctcaatcttcattctaacaatcagatcttcagctgctttgaacttattagcagagaccaacctcaagaccatataacca  18712800
                                          <---------ANAC58
                                          --------->ANAC55(2)
                                          <---------ANAC58
                           --------->ANAC55(2)
                <---------SPL7<---------ARR14(2)
               --------->ANAC58           <---------ANAC55(2)
               --------->ANAC58           <---------ANAC46
               --------->ANAC55(2)     <---------MYB52(1)
               <---------ANAC58       <-------GAMYB
               <---------ANAC58    ------>NtERF2
              <-------TEIL <---------ANAC46
              --------------->AtSPL8 <---------MYB46(3)                               --------->ANAC58
              --------------->AtSPL3 --------->DEAR3(1)                            --------->ZAT2
          <---------------AtSPL3   --------->LBD16                                 --------->At4g35610
 <---------GLK1(1)         <---------ANAC58                                        <---------ZAT2
<---------ARR11(3) <-----------------AGL1<---------LBD16                           <---------At4g35610
--------->ARR11(3)------->TEIL--------->ARR14(2)                            <----------DOF2
------>DOF2   ------->TEIL <---------ANAC58--------->LBD16               <---------ARR11(3)      ---
---GT1    <---------------AtSPL8 <---------LBD16--------->YAB1        <---------ALFIN1--------->ANAC58
 
aaagaactctgatcatgtacgtacccatttgcgtattccgccgttgcggaatcaaaaactgccatagacttctccacatctttttcagctcgcatcagtt  18712900
                                                                              ----------->RAV1(1)
                                                                             --------------->AGL15
                         <---------WRKY18(1)                                 =======================
            <---------ANAC58                                                 <---------------AGL15
            <---------ANAC46                                               ------>MYB83
       --------->REM1(2)--------->WRKY38(1)                                ------>MYB46(1)
      ----------->HVH21 --------->WRKY45                              <-----------GT1              <
     <-----------HVH21  ----------->HVH21                           --------->YAB1                 <
   --------->TOE1(2)    --------->WRKY12                           <---------YAB1                 <-
   --------->TOE2(2)  <----------DOF2        <----------DOF2       <---------ATHB12    ---------->DOF2
------>YAB1 <---------ANAC58           <---------ICU4          ------------>CBF------------>CBF<----
 
tgataacctgtgaaggcgtgatgttctttgaccacttgaacatcatcactttgctacccattactaaacaatgataccttccaacaatagcaaagaatac  18713000
                        --------->ANAC58
                    <---------At4g35610
              --------->GLK1(2)
  <---------YAB1    <---------ZAT2
 <-----------TBP    --------->ZAT2
===============MADS_MADS--------->ANAC58                                         ---------->DOF2
---------------AGL15--------->At4g35610      <---------ANAC58                ------>MYB83
----------DOF2<-----------ARR10              <---------ANAC46            >>>>>>>>>>MYB80
--------DAG2 <---------GLK1(2)               <---------ANAC58<---------YAB1  ------>MYB46(1)
-------GT1 ----------->ARR10   <---------ANAC46             <---------------------WRI1          ----
 
acctttttatagagaagaatctcagctacgcattacgtcgaacaggttgtgtgcataaacgatttcgataggctcaaaccaaatgaaagaaacacagacc  18713100
                                                                                                  --
                                                                                                 <--
                                                                                                 ---
                                                                                           <------NtERF2
                                                                                          --------->LBD16
                                               ----------->RAV1(1)                       --------->ETT(1)
                                  --------->DAG2                                        <---------LBD16
                     --------->TOE2(2)      --------->ANAC58                           --------->MYB52(1)
          <---------ARR11(3)     ---------->DOF2------------>CBF                    <------------CBF
          --------->ARR11(3)   <---------HSFB2a(2)     ------->TEIL              --------->YAB1-----
    --------->ATHB12 --------->TOE1(2)      --------->ANAC58                  --------->WOX13(1) <--
------->GT1 ------>ZmHOX2a(2)  --------->HSFB2a(2)   --------->YAB1       ----------->GT1<---------ANAC46
 
agaaaaatcatttgatcttcaaaacatacgagttccaaaagtgaaggaagcaacaatgaaactcgttacgaactagaaggttaatcaaattgccggagaa  18713200
                                                                                                   <
       --------------->AGL15                                                                       -
      ----------------->AGL2                                                                      --
      ----------------->AGL3                                                                --------
      <-----------------AGL1                                                                --------
      ==============================================================================================
      <-----------------AG                                                                  --------
------->GLK1(2)                                                                        ----------->HVH21
-------ARR14(2)                                 ---------->DOF2                      ---------------
------>ARR14(2)                            --------->At4g35610 <---------HSFB2a(2)   <--------------
------>ARR10                               <---------At4g35610 --------->HSFB2a(2)  <---------------
-------GLK1(2)                         <----------DOF2 ----------->ARR10       --------->ALFIN1-----
 
gaatcgctcaccagttttggctagggtttatgaaatgggagactttagctgcaaagagaagagtctctggacgatttagagggtgtctctctaacaggca  18713300
   <-------TEIL
---------------AtSPL8
-------------->AtSPL8
-------->DOF2
->ANAC46                                                                <---------TOE2(3)
->ANAC58             <-----------GT1                                    <---------TOE1(3)
=MADS_MADS  <-----------GT1                                            ---------->DOF2
->ANAC58   <---------YAB1     <---------AHL20(2)                 --------->AHL20(2)    --------->AHL20(2)
>AGL15  --------->AHL20(2)------>MYB83             ---------->DOF2    <---------AHL20(2)
-AGL15  <---------YAB1  <---------MYB59  --------->ANAC55(2)     <---------AHL20(1) --------->AHL20(2)
--AGL1  <---------AHL20(2)------>MYB46(1)<---------ANAC55(2)     <---------AHL20(2) --------->YAB1
------>RAV1(1)       <<<<<<<<<GT-1       <---------ANAC55(1) <---------AHL20(2)  <---------ICU4
 
acaaagtacatattattacagtattaaccaaatttaaacgaattaagtgtcaacaaaagcttatataaaaaatttaaagtttaaaaattataaaatatgt  18713400
                                                                         ------>MYB46(1)
                                                                         ------>MYB83
                    <---------ICU4                                     <---------MYB46(2)
                    -------->ATHB1                                     <---------MYB111(1)
                    --------->YAB1                                     <---------MYB59
                   <---------AHL20(2)                                 --------->ANAC46             <
                   <---------YAB1                                     --------->ANAC58             <
                   --------->AHL20(2)                                 --------->ANAC58             -
                   --------->AHL20(1)                                ------->TEIL                  -
       --------------->AtSPL8                                 <---------AHL20(2)                   <
       <---------------AtSPL8                                <---------ARR11(3)                    -
   <---------AHL20(1)           --------->ICU4               <---------AHL20(2)                   <-
   --------->AHL20(2)           --------->AHL20(2)           --------->AHL20(2)                   <-
   <---------ARR11(3)      --------->ANAC46                  <---------AHL20(1)                   --
   --------->AHL20(1) <---------YAB1                         --------->AHL20(1) <---------TOE2(3) --
--------->YAB1     --------->ICU4       <------ZmHOX2a(2)    --------->ARR11(3)---------->DOF2------
 
caacaatattttagtacttaaaattattatgcgaaatatttagatcaatggactactcatctaatatatttgcacctaattttaaagtataaattcaacc  18713500
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AGI:  At5g46100.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to EMB1025 (EMBRYO DEFECTIVE 1025) [Arabidopsis thaliana] (TAIR:AT4G20090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64138.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 18711543    to: 18712961    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.