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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
At4g35610
<---------
ZAT2
<---------
At4g35610
--------->
ZAT2
<---------
At4g35610
<---------
GLK1(1)
--------->
At4g35610
<---------
ZAT2
<---------
HSFB2a(2)
--------->
ZAT2
--------->
HSFB2a(2)
--------->
GLK1(1)
------->
RAV1(1)
--------->
DAG2
<-----------
ARR10
--------->
GLK1(2)
-
ANAC58
<---------------
AGL15
<------
NtERF2
--------->
ARR14(2)
-
ANAC46
--------------->
AGL15
<---------
DEAR3(1)
<---------
GLK1(2)
-
ANAC58
<-----------
GT1
---------->
DOF2
<-----------
HVH21
--------->
ANAC46
--------
aacaaaaaaaaaaaaaaccatttacaaaataaagttacagaaaacacaaacgcttcgtcggagctcagcttcccgcttcagaatcggagttgaaatcgaa
18182200
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------->
TOE2(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
At4g35610
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
At4g35610
--------
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
--------->
GLK1(2)
<---------
HSFB2a(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<----------
DOF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
YAB1
<-----------
ARR10
--------->
HSFB2a(2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--->
GT1
<---------
GLK1(2)
--------->
At4g35610
--------->
ATHB12
<---------
HSFB2a(2)
aattttgaaagtttttagaatctcacttccataacgcttctgaaaaaaacactttgaaaacttattggaagctgtagatttcattttggaagtttacgct
18182300
<---------
YAB1
--------->
AHL20(2)
--------->
ATHB51
<---------
ICU4
--------->
ICU4
<---------
ANAC55(2)
--------->
ANAC55(2)
<---------
ICU4
<---------
YAB1
<---
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ICU4
--------->
ARR11(3)
->
ANAC46
<---------
YAB1
--------->
YAB1
<---------
ICU4
<---------
YAB1
----
--
GT1
<---------
YAB1
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
----
tccatttaaattttgattattcacaaataaataagaatcacataattatttttgatagtttttgttttacaaaaaaaaatatgattttgcaatttagaat
18182400
--------->
MYB52(1)
<---------
GLK1(1)
--------->
GLK1(1)
<---------
TOE2(3)
---------->
DOF2
<---------------
AGL15
--------------->
AGL15
<-----------------
AGL1
----------------->
AGL2
<-----------------
AG
------->
GAMYB
--------->
AHL20(2)
--------->
LBD16
------
AHL20(1)
<-----------------
AGL2
<------
ZmHOX2a(1)
<---------
LBD16
----->
ARR11(3)
----------------->
AGL3
----------->
GT1
--------->
MYB52(1)
----->
AHL20(1)
<-----------------
AGL3
---------->
DOF2
--------->
AtMYB61
---------
attttgcatactagcctttctattaaaggaaatcgctaaccgaaatcgaaagtcaggaaaaataaaaactaataaaccaaaactctctaccggagaaaga
18182500
<---------
DAG2
<----------
DOF2
--------->
WRKY12
--------->
DAG2
<---------
ICU4
----
<------
NtERF2
---------->
DOF2
<---------
ARR14(2)
<-------
->
DOF2
---------->
ID1
--------->
YAB1
--------->
AtLEC2
<----------
DOF2
<----------
DOF2
gggtttgaaactttctatttgtcgtcgtgaggctgtcgaataataaagttgactttatgcaaatttgaactaatgactttgggagcgaagactttttaca
18182600
--------->
ZAT14
--------->
ANAC46
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ANAC58
--------->
ATERF1(1)
<-----
--------->
ANAC46
<-------
GAMYB
<---------
ZAT14
<---------
ZAT2
--------->
LBD16
<---------
DEAR3(2)
--------->
At4g35610
<------
ZmHOX2a(2)
<---------
MYB46(3)
--------->
LBD16
--------->
CCA1(2)
<---------
DEAR3(1)
--------->
DEAR3(1)
--------->
ARR11(3)
<---------
ANAC58
--------->
ANAC46
--------->
AGP1
<---------
ANAC58
<---------
ALFIN1
---------->
DOF2
<---------
ARR14(2)
<---------
RAP2.6(2)
--------->
GLK1(1)
----------->
GT1
--------->
ARR14(2)
<---------
ANAC46
<---------
GLK1(1)
------>
DOF2
----------->
GT1
<---------
ARR11(3)
<---------
DREB2C(2)
--------->
ZAT14
--------->
ZAT2
----
GT1
*
TSS
---------->
DOF2
--------->
ANAC58
------------>
AtMYB77
<---------
ZAT14
<---------
At4g35610
aaagaatgt
aaagagcgattaaaagcttaagatccacgaaaaatccacttccc
atggcggttccctccatctacagtgaagaaatcccaccgcagcacca
18182700
--------->
HSFC1(2)
---------->
DOF2
--------->
ANAC58
<-------
GAMYB
--------->
ANAC58
<---------
GLK1(1)
<------
ZmHOX2a(2)
--------->
At4g35610
--------->
GLK1(1)
<---------
ARR11(3)
<------
ZmHOX2a(1)
<---------
LBD16
--------->
ARR11(3)
<--
--------->
ALFIN1
------>
ZmHOX2a(1)
--------->
ANAC58
<---------
At4g35610
<------
ZmHOX2a(1)
<---------
HSFC1(2)
--------->
CCA1(2)
--------->
At4g35610
----
ALFIN1
<---------
At4g35610
--------->
DAG2
<-----------
RAV1(1)
--------->
ANAC58
<----------
DOF2
agtcttcatcaacttcagaggagaggagctacgaaaaagcttcctcgggtttctgttgaaggccatgagagacgcgaagatcaacgtctttacagatgag
18182800
<-------
TEIL
--------->
CCA1(2)
<---------
HSFB2a(2)
------>
ZmHOX2a(2)
--------->
GLK1(2)
<---------
ARR14(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
==============================
HOX2a_HOX2a
<
<---------
GLK1(2)
<------
ZmHOX2a(1)
--------->
ARR11(3)
<---
--------->
CCA1(2)
=============================
HOX2a_HOX2a
<---
<---------
ARR11(3)
<------
ZmHOX2a(1)
<------
NtERF2
--------->
HSFB2a(2)
<----
<---------
ZAT6
<----------
DOF2
<---------
TOE2(3)
<---------
ARR11(3)
<----
<-----------
HVH21
--------->
ANAC46
====================================
HOX2a_HOX2a
--------->
ANAC46
----
ZmHOX2a(2)
--------->
ARR11(3)
=====================================
HOX2a_HOX2a
<-----
atcgaagtcagaggtagagatatacagaatcttttgagcaggattgaggaatcgagagtcgccattgcgatcttatcgaagagatacactgaatcgagtt
18182900
---------
MYB46(3)
<---------
WRKY18(1)
---
MYB83
--------->
WRKY38(1)
<---------
YAB1
---
MYB46(1)
<---------
WOX13(1)
<-----------
HVH21
--------
-----
MYB46(3)
--------->
MYB52(1)
--------->
ZAT2
--------->
At5g28300
-----
AtMYB61
--------->
ICU4
--------->
ARR14(2)
<-------
GAMYB
----------->
GT1
---
P
<---------
AtLEC2
<---------
REM1(1)
<---------
ZAT2
<---------
ATHB12
----------->
RAV1(1)
ggtgtttggatgaattagtgaagatgaaggaacggattgaccaagacgagctcgttgtcattccaatcttctacagattggatgccacaaactgtaaaag
18183000
--------->
ANAC58
------>
ZmHOX2a(2)
--------->
ANAC58
--------->
ARR11(3)
<------
ZmHOX2a(2)
<----------
DOF2
--------->
ARR11(3)
<---------
HSFC1(2)
--------->
ICU4
<------
ZmHOX2a(1)
--------->
HSFC1(2)
<----------
DOF2
==================================
HOX2a_HOX2a
-->
DOF2
<---------
DAG2
<---------
LBD16
---------->
DOF2
---------->
DOF2
--
actcgagggacctttcggcgataattttcggaatttggagagagactatcgaagcgagcctgaaaggatcaagaaatggaaagaagctttgatctctatt
18183100
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AGI:
At5g45000.1
Description:
transmembrane receptor. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51270.2); similar to unknown [Arabidopsis lyrata] (GB:AAO42473.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157)
Range:
from: 18182610
to: 18184420
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.