Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->MYB46(3)                                               --------->At5g28300                                              ----------->GT1                                              <---------DEAR3(2)                         <-----------                                              <------MYB83                              -------------                                              <------MYB46(1)                         ------>MYB46(1)                    <---------AHL20(2)       <---------MYB46(3)                       ------>MYB83                   --------->AHL20(2)        <---------DEAR3(1)                      <---------ALFIN1                 <---------ARR11(3)          --------->MYB46(2)     ------->TEIL    ------->GAMYB               <---------TOE2(3)             --------->MYB59      <-------TEIL      --------->MYB46(3)        ------->GAMYB                       <--------P     --------->ANAC58      <-----------GT1      -------->P --------->ARR11(3)   --------->MYB52(1)   --------->ANAC58     <-----------GT1------    --------->MYB46(3)                <-----------GT1     ------->TEIL    <---------TOE2(3)   -------   atatgaacaacccaaataagatttaataaacaaaatagattaacgggtcggtaacaaatgtacccaaatgcattttaagtttttaacccacccataaaaa  17024200                                <------ZmHOX2a(2)        --------->YAB1         --------->ARR11(3) ----AGL15                     <---------ARR11(3) ---->AGL3                 ---------->DOF2                       ----------->GT1 --->DAG2       --------->HSFB2a(2)                              <----------ID1 --->DOF2       <---------HSFB2a(2)        --------->MYB46(3)---------->DOF2     ------->TEIL   gtgactccaaaaatacttatagaaatactaaaagatcactatccatccactagaccagtaaatgaaagagaaaaaaaaacatgaattttcaaatttgaaa  17024300                                   --------->YAB1                      --------->ARR11(3)                      --------->AHL20(1)             --------->TOE2(3)     <---------ICU4             <----------DOF2       --------->ATHB12                                         <--------             --------->TOE1(3)    <---------ATHB12                                      --------->AHL20(2)          <---------ALFIN1     <---------AHL20(2)                                       <---------AHL20(2)         <---------ALFIN1     --------->AHL20(2)                                --------->AtMYB61        --------->LBD16   ----------->GT1                                   --------->MYB46(3)       --------->ANAC46--------->CCA1(2)                            >>>>>>>>>MYB98------>MYB83<------ <---------AHL20(2)  --------->AHL20(2)               <-----------GT1 --------->TOE2(2)--------->AHL20(2) --------->AHL20(2)--------->AHL20(2)   <---------TOE2(3)          <-----------GT1------>MYB46(1)   cattttaatccccaactttaaaaatatatggattaaatcattaagttttttttttttaacttagccatttaacatatgaccaccatccatttattttaac  17024400                <---------------AtSPL8          <---------AHL20(2)          --------->YAB1       <---------ICU4      <---------YAB1      --------->ICU4                                                                               <-    --------->YAB1                                                                                 <-   <---------TOE2(3)          <----------DOF2                                                     <--   <---------YAB1   ---------->DOF2        <-----------GT1                   <---------CCA1(2)    ---  <-----------GT1----------->GT1      <---------YAB1                       --------->AHL20(2)     <-- -AHL20(2)--------->AHL20(2) <---------ANAC58              ----------->GT1 <---------AHL20(2)   <---- -----GT1<---------YAB1      <---------ANAC58     <---------YAB1      <-------TEIL              <----   aaattaacataattatatagggtaaagaaatgcttttcttatttttgacattctaattctagggtaaacaaatacatttatatctaatttcaatatttaa  17024500                                                                   <-----------GT1                             --------->ARR14(2)             ------------>CBF         --------->AHL20(2)  <---------ARR14(2)            ------>MYB83         <---------AHL20(2)  ------->TEIL                  ----------->RAV1(1) <---------AHL20(2)      <---------WOX13(1)                ------>MYB46(1) --------CCA1(1)       -------->HAHB4                    ------->GAMYB --------RVE1(1)       --------->ATHB12                  --------->MYB46(3) -------GLK1(2)       --------->ICU4                   --------->ANAC58 ------>ARR11(3)      <---------YAB1                   --------->ANAC58 -------ARR11(3)  --------->AHL20(2)               --------->AtMYB61                           ------ -----TOE2(3) --------->AHL20(2)      <-----------GT1--------->MYB46(3)                      <------- -----TOE1(3)--------->AHL20(2)  ----------->GT1  --------->MYB46(3) <---------LBD16         --------   gatttttttttttaaataaaaaaaatgattgaatctggtttaaccaatttgaaccacaacccaacaatttatccggttcgatttggaaatagcaagtgtg  17024600                                                                                  ---------->DOF2                                                                                --------->LBD16                                                                                ------>NtERF2                                                                                <------NtERF2                                                                               --------->RAP2.3(3)                                                                               --------->RAP2.3(2)                                                                               --------->RAP2.6(2)                                                                               --------->RRTF1(3)                                                                               --------->RRTF1(2)                                           <-----------HVH21                   --------->DEAR3(1)                               <---------AHL20(2)                             --------->RAP2.3(1)                          --------->AHL20(2)----------->HVH21                 --------->RRTF1(1)                        ----------->GT1  --------->LBD16                    --------->DEAR3(1)                      ---------->DOF2    *TSS                               ------->GAMYB         --------->bZIP60(1)   --------->AHL20(2)                          --------->MYB46(3)   <---------MYB52(1)--------->YAB1     <---------ANAC58             --------->ZAT14  <-------GAMYB     <<<<<<<<<ARR2       <---------ANAC58             <---------ZAT14 <---------ZAT6     <---------ATHB12    <---------ANAC46  <---------At5g28300------>NtERF2 --->ALFIN1     ------------>CBF      ------>ZmHOX2a(1) ----------->HVH21  --------->DEAR3(2) ----RAV1(1)   --------->YAB1 <---------AHL20(2)  ---------->DOF2    --------->WRKY38(1) ->ALFIN1<---------bZIP60(1)  --------->AHL20(2)<---------MYB59     <---------MYB52(1)          <----   ggactgttatgaggtcatcacaatcaaagtaaattaattcctccgtgtgacctaaagagtgaccgttcccgttcactaccgccgcaaagtcttgtggcta  17024700                                                           <---------At4g35610                                                 <---------MYB52(1)                                                --------->LBD16                                               <---------ANAC46                                               <---------ANAC58                                               <---------ANAC58             --------->GLK1(1)                                            --------->ARR14(2)         --------->LBD16                                            <---------ARR14(2)  <---------ANAC46                  ---       ----------->GT1  --------->ANAC46   --------->GLK1(1)    <---------ANAC58        <---------ZAT14 -----ZAT14  <-----------GT1               <---------GLK1(1)    <---------ANAC58   --------->WRKY38(1)   cagagcttagggtttaaactttcttcacgataattttccgatgggagttccgtcgttctacagatggcttatccagaggtatccattgactatacaagaa  17024800                                        <---------YAB1                                     <------NtERF2                                    <-----------HVH21                                    ------>NtERF2                                    <-----------TGA1                                   --------->O2                                   <---------bZIP60(1)                                   --------->bZIP60(2)                                   --------->bZIP60(1)                                  --------->RAP2.3(1)                                  <------NtERF2                                  --------->RRTF1(1)                                  --------->ATERF1(1)                                 <---------RAP2.3(1)                                 <---------ATERF1(1)                                 <---------RAP2.6(1)                                 ------>NtERF2                                 <---------DEAR4(2)                                 <---------ERF1                                 <---------RRTF1(1)                                 <---------ORA47(2)                                --------->DEAR3(1)                                <---------DEAR3(1)                                <---------ANAC46                                <---------RAP2.3(2)                                <---------RAP2.3(3)                               --------->DEAR4(2)                               <---------ABI4(1)                               <------NtERF2                               --------->RAP2.3(1)                               --------->ATERF1(1)                               --------->At4g35610                               <---------At4g35610                               --------->DREB2C(1)                              <---------RAP2.3(1)                              <---------ORA47(2)                              <---------ERF1                              <---------ATERF1(1)                              <---------DEAR4(2)                              ------>NtERF2                              <---------RAP2.6(1)                              <---------RRTF1(1)                        --------->MYB52(1)                             <---------ANAC46                          ------>ZmHOX2a(1)                             --------->ATERF1(2)                     --------->YAB1                             <---------RAP2.6(2)                  ------>MYB46(1)                             <---------DEAR3(1)                 <---------MYB59               <------                             <---------RAP2.3(3)                --------->TOE2(3)            --------                             <---------DREB2C(2)         --------->ANAC46              --------->YAB1                             <---------RRTF1(3)          --------->ANAC58       <---------ANAC55(1)                             <---------RRTF1(2)          --------->AtLEC2  <---------MYB46(3)<-------             <---------ALFIN1<---------RAP2.3(2)         --------->ANAC58  <---------ICU4  --------->GLK1(2) ------>ARR11(3)             <---------ATERF1(2) <---------ATHB12 ------>MYB83  <---------ANAC46   gttattgaagaagagccactcgaagttaatggcggcggcgtcacgattccaatcgattcaagcaaacctaatcctaatggttacgagtatgacaatcttt  17024900                                                                  <---------HSFB2a(2)                                                                  --------->HSFB2a(2)               <---------ATHB12                                   --------->ANAC46               --------->ICU4                                     --------->ANAC58          --------->ANAC46                                        --------->ANAC58          --------->ANAC58                          --------->HSFB2a(2) --------->ALFIN1 ----DOF2 --------->ANAC58           ------>ZmHOX2a(1)            <---------ANAC55(2) ->YAB1  ------->TEIL   XXXXXXXXXXXXXXXXXXXX>MIR774B*            <---------LBD16   ------->TEIL   --- --ICU4 --------->MYB52(1)   <-----------GT1   --------->HSFB2a(1)--------->ANAC55(2)             ---   atctcgacatgaacggaatcattcatccatgtttccatcctgaagacaaaccttctccaactacatttacggaagtgtttcaatgtatgttcgattacat  17025000              <---------TOE2(3)--------->ARR11(3)     <---------DAG2      --------->TOE1(1)     <----------DOF2    <---------LBD16<---------ICU4          ---------->ID1 ------>ATHB12<---------YAB1  <---------At4g35610    <---------ANAC58 ------>YAB1  <---------TOE1(3)<---------ARR11(3)    <---------ANAC58       <-----------GT1 <--------   tgataggctttttgttatggttcgacctcggaagctcttattcatggctattggtgagtgtttttgtctcattacattttacgaattggtttttaagttt  17025100  Previous    Next  AGI:  At5g42540.1    Description:  XRN2 (EXORIBONUCLEASE 2); 5'-3' exonuclease/ nucleic acid binding. similar to XRN3 (5'-3' exoribonuclease 3), 5'-3' exoribonuclease [Arabidopsis thaliana] (TAIR:AT1G75660.1); similar to hypothetical protein OsJ_004151 [Oryza sativa (japonica cultivar-group)] (GB:EAZ14326.1); similar to putative 5-3 exoribonuclease [Oryza sativa (japonica cultivar-group)] (GB:BAB86550.1); similar to hypothetical protein OsI_004507 [Oryza sativa (indica cultivar-group)] (GB:EAY76660.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Putative 5-3 exonuclease; (InterPro:IPR004859); contains InterPro domain Exonucle Range:  from: 17024641    to: 17032029    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.