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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
MYB83
<XXXXXXXXXXXXXXXXX
<------
MYB46(1)
<---------
ANAC58
<---------
WOX13(1)
<---------
ANAC46
------->
DOF2
<---------
ANAC58
-
----
ID1
----------->
GT1
<---------
TOE2(3)
<---------
MYB52(1)
<
caaagagattggtatgagaaaacccaaactaaaccaagagtgaatttggaatcaaaggttagagaattcatcttcgtttgcttgtttttgttctctctcc
16994500
--------->
TOE2(3)
<-------
TEIL
<---------
ANAC46
<---------
TOE1(2)
<---------
ANAC58
--------->
LBD16
<---------
ANAC58
------>
ZmHOX2a(1)
<---------
HSFB2a(1)
<-----------
GT1
<
<---------
LBD16
<-----------
RAV1(1)
--------->
RVE1(1)
<--------
XXXX
MIR2936
--------->
ANAC46
<---------
YAB1
<----------
DOF2
<---------
HSFB2a(2)
----
-------->
ARR14(2)
--------->
HSFB2a(1)
---------->
DOF2
--------->
ANAC46
--------->
HSFB2a(2)
----
---------
ARR14(2)
<------
ZmHOX2a(1)
<---------
AHL20(2)
------>
ZmHOX2a(1)
--------->
At4g35610
<-----
cagttcctgggttcacgacgaggaatgttgcatatgattttatctcaaagagtaatccttttacgaaaatatcactcttctgcaaatgcccttgttacca
16994600
--------->
ANAC55(1)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC55(2)
<---------
ANAC55(2)
--------->
ANAC58
<-------
GAMYB
----------->
HVH21
<------
MYB83
------>
ZmHOX2a(2)
<------
MYB46(1)
<------
ZmHOX2a(2)
------>
MYB83
<---------
MYB46(3)
<---------
ARR14(2)
------>
MYB46(1)
----------->
GT1
--------->
ARR14(2)
-----------
GT1
<--------
P
<---------
AGP1
<---------
ZAT18
<--------
---
GT1
--------->
GLK1(2)
<---------
CCA1(2)
------->
TEIL
<---------
At4g35610
-->
MYB83
--------->
LBD16
--------->
ATHB12
---------->
DOF2
--------->
ANAC46
--------->
At4g35610
-->
MYB46(1)
--------->
LBD16
--------->
ARR11(3)
<-------
TEIL
--------->
ALFIN1
------>
ZmHOX2a(1)
----
MYB59
<---------
LBD16
--------->
YAB1
<---------
At4g35610
--------->
DAG2
--------->
LBD16
----
aatcaccaaattctatccccgagttggttaaacatattgattcggatctgatacgtaatgcacataaggtgttcgacgaaattcctgagttagatgtcat
16994700
---------->
ID1
<------
MYB83
<------
MYB46(1)
<---------
WOX13(1)
<---------
MYB46(3)
--------->
MYB55(2)
--------->
ANAC58
--------->
ATHB12
--------->
ANAC58
<-------
GAMYB
<---------
DEAR3(1)
--------->
ANAC58
--------->
MYB111(2)
<---------
At4g35610
<-------
MYC3
<---------
MYB46(3)
<---------
At4g35610
--------->
At4g35610
--------->
ANAC58
----------
--------->
At4g35610
<----------
DOF2
------->
MYC3
--------->
ANAC58
<----------
ID1
---
HVH21
--------->
At5g28300
<---------
At4g35610
--------->
WRKY18(1)
<---------
ANAC46
----->
ARR14(2)
<---------
AtMYB61
---------->
DOF2
--------->
ANAC58
--------->
DAG2
--------->
DAG2
ttctgctacagcggtgattggtcgctttgtgaaggaaagcagacatgtggaagcaagtcaagccttcaaaaggttgttgtgtttaggcataaggccaaat
16994800
<-------
TEIL
<----------
DOF2
<---------
At4g35610
--------->
ZAT2
--------->
At4g35610
<------
<------------
CBF
<-----------------
AG
<------
<---------
MYB46(3)
----------------->
AGL1
<------
--------->
ATHB12
----------->
GT1
<---------
At4g35610
<---------
TOE2(3)
--------->
At5g28300
<---------
HSFB2a(2)
--------->
ANAC58
<---------
DOF5.7(2)
<-----------
HVH21
--------->
HSFB2a(2)
--------->
ANAC58
---------->
DOF2
--------->
ANAC58
--------->
REM1(1)
<--------
P
<------------
CBF
<---------
ANAC58
<---------
DOF5.7(2)
<---------
HSFB2a(2)
--------->
MYB59
*
TSS
--------->
DOF5.7(2)
------->
AGL1
--------->
ANAC58
--------->
HSFB2a(2)
<------------
CBF
--------->
ATHB12
<---------
ANAC58
gagttcacgtttggcacggtcattgggtcttctacaacttcgagagatgtcaaattgggtaagcagcttc
attgttatgcgttaaag
atgggacttgcgt
16994900
--------->
ARR14(2)
<---------
RAP2.6(2)
<---------
ZAT14
--------->
ZAT18
<-------
GAMYB
<---------
ARR14(2)
<---------
MYB46(3)
--------->
MYB52(2)
<---------
GLK1(2)
--------->
MYB111(2)
<---------
At4g35610
--------->
MYB55(2)
<---------
ANAC46
--------->
WRKY38(1)
---
ANAC58
<---------
ZAT18
<---------
ANAC55(2)
--------->
At4g35610
---
ANAC58
<------
MYB46(1)
----------->
GT1
----------->
HVH21
--------->
ZAT6
---
ANAC46
<------
MYB83
<---------
MYB52(1)
--------->
WRKY12
<---------
ARR11(3)
cgaatgtgtttgttggtagtgcggttttgaactgttatgtgaaactgagtacgttgacagatgctcgtagatgttttgatgacactagagacccaaacgt
16995000
<---------
PCF2
<------
MYB46(1)
<------
MYB83
<-----
<---------
MYB46(3)
<-----
<---------------
AtSPL8
<---------
MYB52(1)
<-----
--------->
ATHB12
<-------
GAMYB
-------
<---------
YAB1
--------->
TOE1(3)
--------->
ARR11(3)
-----------
--------------->
AGL15
------->
TEIL
<----------
DOF2
--------->
ALFIN1
----------------->
AG
--------->
TOE2(3)
<---------
ARR11(3)
<---------
ZAT14
agtttctattaccaatttgattagtgggtaccttaagaaacatgaatttgaagaagctctttcgttgtttagagcaatgcctgagagaagtgttgttact
16995100
------>
MYB46(1)
------>
MYB83
---------
<---------
MYB46(2)
<---------
MYB59
<---------
MYB52(2)
<---------
ANAC46
--------->
ALFIN1
<------
MYB83
<---------
MYB111(1)
--------->
ATHB12
<---------
SPL7
<---------
GLK1(1)
----------->
GT1
<---------
MYB52(1)
<------
NtERF2
--------->
ARR14(2)
<---------
AtMYB61
----
ANAC46
------>
NtERF2
<---------
ANAC46
<------
MYB46(1)
--------
----
ANAC58
<---------
O2
<----------
DOF2
<---------
TOE1(3)
<---------
ANAC55(2)
----
ANAC58
<---------
TGA1a
--------->
At5g28300
<---------
TOE2(3)
--------->
ANAC55(2)
-->
MYB52(2)
=======================================
bZIP_DOF
<---------
AtMYB61
>
GT1
--------->
ICU4
----------->
HVH21
----------->
GT1
<---------
ARR14(2)
--------->
ALFIN1
tggaatgcagttattggagggtttagccagacggggcggaacgaagaggctgtgaatacttttgtggatatgttaagggaaggtgtggtgatacctaacg
16995200
---------->
DOF2
<----------
DOF2
--------->
ZAT18
<---------
ATERF1(1)
<---------
DEAR3(1)
------>
MYB83
--------->
ANAC58
------>
MYB46(1)
<---------
GLK1(2)
--------->
ARR14(2)
--------->
AtMYB61
--------->
ARR14(2)
----------------------->
TaNAC69(2)
--------->
HSFB2a(2)
------->
TEIL
<---------
ARR11(3)
<---------
ANAC46
--------->
ANAC46
<---------
HSFB2a(2)
-------->
P
<---------
ARR11(1)
<---------
At4g35610
----------->
RAV1(2)
<---------
LBD16
<-----------
GT1
<---------
CCA1(2)
<-----------
RAV1(1)
--------->
ANAC58
--------->
ARR11(3)
>
MYB55(1)
------->
GAMYB
<---------
ANAC58
<---------
ARR14(2)
<---------
ARR11(3)
->
MYB52(1)
--------->
MYB46(3)
<---------
ANAC58
<--------
P
<-----------
GT1
--------->
DAG2
aatcaaccttcccttgtgctataacagccatatctaatatagcttctcatggtgctggtaagagtattcacgcctgcgctataaagttcttggggaagcg
16995300
<----------
DOF2
<---------
ANAC58
<---------
ANAC58
--------->
At4g35610
---
<---------
ARR11(3)
----
--------->
ARR11(3)
------
<---------
GLK1(1)
<---------
ARR14(2)
--------->
ANAC58
----
<----------
DOF2
--------->
ALFIN1
<---------
At4g35610
>>>>>>>>>
TBF1
<---------
ARR11(3)
<-----------
GT1
--------->
ARR14(2)
--------->
ANAC58
----
attcaatgtctttgtttggaactctctgatcagtttttactcaaaatgtgggaacatggaagatagtcttctggctttcaacaagctcgaagaagaacaa
16995400
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AGI:
At5g42450.1
Description:
pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18097.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:
from: 16994871
to: 16996244
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.