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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-----
-----
-----
---------->
DOF2
<---------
MYB52(2)
--------->
ARR11(1)
<---------
ATHB12
<---------
GLK1(1)
----------->
GT1
<-------
TEIL
-------->
ANAC58
<--------
P
<---------
At4g35610
--------->
ARR11(3)
-------->
ANAC58
--------->
At5g28300
<---------
AHL20(2)
--------->
CCA1(2)
------->
WOX13(1)
--------->
ANAC46
------->
GAMYB
--------->
At4g35610
---------->
DOF2
<--
---->
YAB1
<---------
AHL20(2)
--------->
MYB52(1)
--------->
MYB46(3)
--------->
AHL20(2)
acaatcaagtcaagagaattaatacacaagaacatagaaataacggtagatttctcagcgaaccaattcatataatgtaacaataaaagatacagcccaa
14988100
-------->
ATHB1
--------->
YAB1
<--------
ATHB1
--------->
ATHB51
<---------
ICU4
<---------
ATHB51
--------->
ICU4
<---------
ATHB12
<---------
YAB1
---->
ANAC58
--------->
GLK1(2)
---->
ANAC58
<---------
ARR11(3)
--------->
DAG2
--------->
AGP1
---->
ANAC46
--------->
ARR11(3)
<----------
DOF2
--------->
LBD16
-------
GLK1(2)
<---------
TOE2(3)
--------->
WRKY38(1)
<-----------
GT1
-----
gaaactcaagagaagtttgagattttgaaacaataattgttgactctttgtgagaaaaattggtttttggcaacgtttttactaaacccagaactataac
14988200
----
--------->
At4g35610
------>
NtERF2
------>
MYB83
--------->
LBD16
--------->
REM1(1)
--------->
YAB1
--------->
HSFB2a(2)
<------
ZmHOX2a(1)
------>
MYB46(1)
<---------
LBD16
---->
ZAT6
---------->
DOF2
<-----------
GT1
---------->
DOF2
<-----------
GT1
<-
tctaaactacttcaatggaagaacaaaaggactacaactaataaaccaacttaatcagcaaaacaaaatgaaagttagaaatttgtttac
ctccggagcc
14988300
--------->
ARR11(3)
<---------
ARR11(3)
<---------
HSFB2a(2)
--------->
HSFB2a(2)
<----------
DOF2
--------->
HSFB2a(2)
------>
ZmHOX2a(2)
<---------
HSFB2a(2)
<---------
ARR11(3)
<---------
LBD16
----------->
GT1
<---------
ARR14(2)
--------->
ARR11(3)
<-----------------
AGL2
----------->
GT1
--------->
CCA1(2)
<<<<<<<<<
TAC1
<-------
TEIL
<---
----->
WOX13(1)
<---------
ARR11(3)
--------->
ZAT6
<---------
ARR14(2)
<---
--------
ATHB12
---------->
DOF2
--------->
ARR11(1)
<-----------
GT1
--------->
ARR14(2)
<---
aattaagaagtgaatcccaaagacccat
ctccaaagatttgatcttttcgaagatttaacactcgagttctggatttggagattcaaaatcgaaatattt
14988400
<---------
MYB59
--------->
GLK1(2)
<---------
ARR14(2)
<---------
GLK1(2)
--------->
ARR14(2)
------
ANAC58
----------->
ARR10
<---------
TOE2(3)
------
ANAC46
<------
ZmHOX2a(1)
------->
TEIL
<---
------
ANAC58
<------
ZmHOX2a(1)
<---------
GLK1(2)
<---------
TOE1(3)
cgtagccctagttcgattcttgaattttgctagatgggtaatgagagaaacagagaggaagaggaacagggaagaatctggaccttacttaaggtaatag
14988500
<----------
DOF2
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
<-----------
RAV1(1)
<------------
CBF
--------->
ANAC58
----
--------->
ANAC46
<----
<-----------
HVH21
<----
----------->
GT1
*
TSS
--------->
ANAC58
<-----------
GT1
<----
------
GLK1(2)
--------->
MYB52(1)
--------->
bZIP60(1)
--------->
HSFB2a(2)
<----------
DOF2
aatttgtcagtttgtgaaaacggtgtctcttccttcactctt
ggtgtcacgctattgttgcttttagaattttagatgtcaccattctttttttttttgt
14988600
----------->
GT1
------------------------>
ANAC81
--------->
DAG2
--------->
AHL20(2)
<---------------
AGL15
--------->
AHL20(2)
--------------->
AGL15
<---------
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
--------->
ANAC46
----------->
AtSPL8
--------->
MYB52(1)
---------->
DOF2
-----
ANAC58
<----------
DOF2
<---------
MYB52(2)
<---------
AHL20(2)
--------->
At4g35610
-----
ANAC46
<-----------------
AGL1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ANAC58
-----
ANAC58
<-----------------
AGL2
--------->
YAB1
<---------
AHL20(2)
--------->
ANAC58
<--------
gtgttccttttatttcttttatgggaaatttgcaaagaataactaacaaaaatttataaattaaaaaagtaatacaagaaaaaaaaaacagctatattct
14988700
--------->
YAB1
-------->
HAHB4
<---------
ICU4
--------->
ICU4
<---------
ATHB51
<---------
YAB1
<---------
AHL20(2)
--------->
TOE2(3)
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<----------
DOF2
<---------
AHL20(2)
--------------->
AtSPL8
------>
ZmHOX2a(1)
--------->
AHL20(2)
<-----------
GT1
<---------
DAG2
<------------------------
ANAC81
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
MYB59
------>
ZmHOX2a(1)
-
GLK1(2)
<---------
AHL20(2)
<----------
DOF2
------>
ZmHOX2a(1)
<----------
DOF2
ctatattatatataataatggcatatttacctctttctctctaccttattctaagttcctccttctctcctctctttttcatctttttttttttttttct
14988800
<---
xxxx
xxxx
xxxx
<---------
ANAC46
<---------
ANAC58
--------->
ATHB12
xxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxx
<---------
YAB1
<
<---------
At4g35610
<xxxxxxxxxxxxxxxxx
--------------->
AGL15
<----
--------->
ANAC58
=============================
--------->
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------------------
WRI1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
MYB52(1)
<---------
ARR14(2)
<---------
WOX13(1)
--------->
TOE1(2)
--------->
ARR14(2)
xxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxx
<---------
MYB52(2)
<---------
At4g35610
--------->
ATHB12
--------->
MYB46(3)
--------->
ARR11(3)
xxxxxxxxxxxxxxxxxxxx
------->
GAMYB
<----------
ID1
--------->
At4g35610
xxxxxxxxxxxxxxx
--------->
MYB46(3)
<---------
GLK1(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
MYB52(2)
<---------
ARR11(3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxx
smallRNA(le3)
<----
--------->
ZAT6
---------->
DOF2
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxx
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<-----------
GT1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
ANAC58
<----------
DOF2
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<----
ctcaatctcttctcttttttttttctgtataacacaacaaacaaacgaaaagaacaaactagatttttcagataccacttatgttatctgattgcttggg
14988900
---------->
DOF2
-----
P
------->
TEIL
xxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
>
smallRNA(i)
xxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxx
smallRNA(fl3)
---
GAMYB
<---------
CCA1(2)
======================================================================================
MADS_MADS
xxxxxxxx>
smallRNA(si3)
<---------------
AtSPL8
xxx>
smallRNA(si3)
--------->
AHL20(2)
xxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxx>
smallRNA(le3)
<---------
YAB1
<-----------
GT1
-----
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
----------------->
AG
xxx
xxxxxxxxxxxxxxxxx>
smallRNA(le3)
----------->
GT1
<---------
AHL20(1)
---
-----
ANAC58
<---------------------
WRI1
<---------
AHL20(2)
<----------
DOF2
ttgccaaagttgtatcttagggtatagttttctatacatccaaaatagtataatacaacattttatttctatccaaaatagtacaagtctttacttacaa
14989000
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AGI:
At5g37680.1
Description:
ATARLA1A (ADP-ribosylation factor-like A1A); GTP binding. similar to ATARLA1D (ADP-ribosylation factor-like A1D), GTP binding [Arabidopsis thaliana] (TAIR:AT5G67560.1); similar to Os02g0732500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048027.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83936.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689)
Range:
from: 14986826
to: 14988542
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.