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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
--------->
ANAC58
--------->
AHL20(1)
------>
NtERF2
--------->
AHL20(2)
<------
NtERF2
<---------
AHL20(1)
--------->
DEAR3(1)
--------->
ZAT6
<---------
AHL20(2)
<---------
LBD16
<---------
TOE2(3)
<---------
DAG2
------
GT1
--------->
ARR11(3)
--------->
AHL20(2)
----------->
HVH21
<-----------
GT1
--->
YAB1
<---------
ARR11(3)
--------->
YAB1
--------->
TOE2(3)
<----------
DOF2
--------
>
YAB1
--------->
TOE2(3)
--------->
ANAC58
<-----------
GT1
<-----------
GT1
<---------
ICU4
caaatttattagcctaaaatctcgcggcccaaacccaattacaagaatttaacattagtgactatttactgacacttttgcgactaattacaaacttatt
11576000
<---------
ARR11(3)
--------->
ARR11(3)
---------->
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
<---------
At5g28300
--------->
MYB46(3)
--------->
YAB1
<---------
AHL20(2)
<---------
MYB111(2)
->
ATHB12
------>
NtERF2
--------->
YAB1
<-----------
GT1
--------->
ATHB12
------>
NtERF2
gggcccaaaaactcgaggcccaaacacaattaaaagaattaatatctagttacagttttgcgactaatatcaaacttattgggccaacaacttgaggccc
11576100
<---------
TOE1(3)
<---------
TOE2(3)
-
--------->
ANAC58
<----------
DOF2
--
--------->
ANAC58
------>
MYB83
---
--------->
SPL7
--------->
ANAC46
------>
MYB46(1)
<--
<---------
SPL7
<---------
ALFIN1
-------->
P
<--
---------->
DOF2
--------->
GLK1(2)
------>
NtERF2
<---------
ALFIN1
<--------
aaacaaagtcgcgactaaaactcaaaattctggcccgaacgcgaggcccataccctacttcaacaattctaaaccctacccttttaagggtttttttctt
11576200
----------->
HVH21
<---------
ZAT2
<---------
At4g35610
<----------
DOF2
--------->
At4g35610
<----------
DOF2
----------->
RAV1(2)
------>
ZmHOX2a(1)
-------
--------->
ZAT2
===============
HOX2a_HOX2a
<------
<-----------
RAV1(2)
<----------
DOF2
==========================
HOX2a_HOX2a
-------->
LBD16
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
------>
MYB83
------->
ANAC46
===============================
HOX2a_HOX2a
------>
MYB46(1)
------>
HSFB2a(2)
------>
ZmHOX2a(2)
<-------
TEIL
--------->
ARR11(3)
--------
-------
HSFB2a(2)
--------->
WOX13(1)
<------------------------
ANAC81
<---------
MYB111(2)
-------
LBD16
--------->
ANAC58
================
HOX2a_HOX2a
<---------
ARR11(3)
------>
ZmHOX2a(1)
---
GT1
--------->
ANAC58
================================
HOX2a_HOX2a
<----------
DOF2
cccgcagctgacttcgaaaccctagcaatctctcttcgatctctcttcctctctttgattcatccttttcgatctttcttctctttgattcctccaacca
11576300
-->
MYB46(3)
<---------
ATHB12
---
ATHB12
<----------
DOF2
------------>
CBF
>
P
------------>
CBF
<-----------
GT1
<---------
ICU4
tttcgattcaaactcacattgtattttcaaaatcaaactcacaatctctctttgatttcacactctcaatctttcttcgatttcatacttacaaactctc
11576400
<--------
<---------
ALFIN1
----------
<xxxxxxxxxx
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(2)
<---------
TCP20
--------->
ARR14(2)
<---------
TCP16(1)
<---------
ARR14(1)
--------->
LBD16
<------
NtERF2
---
<---------
ALFIN1
<---------
LBD16
<-
--------->
AtMYB61
--------->
MYB52(1)
--------->
DEAR3(1)
------>
NtERF2
----
*
TSS
<------
NtERF2
--------->
ANAC46
<---
--------->
ATHB12
<---------
DEAR3(1)
--------->
ANAC58
<----
<-----------
HVH21
--------->
DAG2
=================================
HOX2a_HOX2a
--------->
LBD16
<------
ZmHOX2a(1)
================================
HOX2a_HOX2a
--------->
ANAC46
----------->
GT1
--------->
MYB46(3)
--------->
ANAC58
<-----
<-----------
GT1
<---------
YAB1
---------->
DOF2
------>
ZmHOX2a(1)
--------->
MYB46(3)
<-
tcagtctccagcatttttctctccgtcaaacg
atgtttgggcgaggaaaaaagcggcgaaccactcctaaacttgctcatcaagccaccggatccacggt
11576500
--------->
At4g35610
<---------
At4g35610
--------->
ZAT2
<---------
At4g35610
--------->
ETT(2)
<---------
ZAT2
----------->
HVH21
--------->
ZAT2
--------->
SPL7
<------
NtERF2
<---------
SPL7
------>
NtERF2
-
LBD16
<-----------
RAV1(2)
-->
AtMYB77
--------------->
AtSPL8
xxxxxxxxxxxxx
smallRNA(se3)
--------->
ANAC58
------>
At4g35610
<---------------
AtSPL3
--------
ANAC58
--------->
LBD16
--------->
ANAC46
----->
MYB55(2)
------>
NtERF2
--------->
ANAC58
------->
GAMYB
-----
------
MYB46(3)
<---------
LBD16
<---------
DAG2
--------->
ANAC46
------>
MYB83
----
P
<---------
ZAT14
<----------
DOF2
--------->
ANAC58
---------->
DOF2
---------
--
GAMYB
--------->
ZAT14
--------->
SPL7
--------->
At4g35610
--------->
At4g35610
------>
MYB46(1)
--------
ANAC58
----------------------->
TaNAC69(2)
--------->
ANAC58
------>
ZmHOX2a(1)
<--------
tgctggacgaccgagtactcttccggctcagtacgactttacgccagcagctcaacgtaaccctctgcttcagagtcctgaaagaccagcctccgttcct
11576600
--------->
LBD16
--------->
DEAR3(1)
<---------
ALFIN1
--------->
ANAC46
--------->
MYB46(3)
-------->
P
<---------
At4g35610
<---------
ATERF1(1)
------->
GAMYB
<---------
MYB111(1)
<---------
DOF5.7(2)
<---------
ARR14(2)
--------->
TOE1(3)
<---------
WRKY45
<---------
HSFB2a(2)
--------->
TOE2(3)
<---------
WRKY12
--------->
ANAC46
--------->
AtMYB61
<---------
WRKY38(1)
--------->
ARR14(2)
--------->
At4g35610
--------->
WRKY18(1)
--------->
LBD16
<---------
MYB52(1)
--
<---------
ZAT14
--------->
HSFB2a(2)
----------->
RAV1(1)
--------->
LBD16
<--
--------->
ZAT14
<---------
LBD16
------>
NtERF2
<---------
ANAC55(2)
<--
<-------
TEIL
--------->
At4g35610
--------->
ANAC46
<---------
ANAC46
<------
ZmHOX2a(1)
->
ZmHOX2a(1)
<---------
ZAT2
<---------
MYB52(2)
--------->
ANAC55(2)
================
>
ARR14(2)
--------->
MYB46(3)
--------->
MYB46(3)
<---------
ALFIN1
-------->
P
---------->
DOF2
-
MYB52(1)
--------->
ANAC46
<-----------
ARR10
<---------
MYB52(1)
<---------
At4g35610
<--
caagtacagtcaacgacagctcatgtccggaactaccctccgcctcaacagttattccagcactccgtgattcagcaacctcaactacaaaggacttctt
11576700
<---------
ATERF1(1)
<---------
ARR14(2)
<-----------
HVH21
--------->
ARR14(2)
--------->
bZIP60(2)
<---------
MYB52(1)
--------->
TGA1a
------>
NtERF2
<---------
DEAR3(2)
<---------
O2
--------->
ANAC58
<---------
ATERF1(1)
--------->
O2
<---------
At4g35610
<---------
ZAT2
-
--------->
GLK1(2)
------>
ZmHOX2a(1)
<---------
ALFIN1
<---------
ALFIN1
------->
LBD16
<---------
TGA1a
--------->
ANAC58
<---------
ZAT2
<---------
At4g35610
-
-------
ANAC46
--------->
ANAC58
--------->
ZAT2
--------->
ZAT2
------>
ZmHOX2a(1)
xx
-------
ANAC58
--------->
ANAC46
<---------
ZAT2
------>
ZmHOX2a(1)
<---------
ALFIN1
------>
ZmHOX2a(1)
==============================
bZIP_DOF
<---------
ALFIN1
---------->
ID1
<-----------
RAV1(2)
------>
ZmHOX2a(1)
-------
ANAC58
--------->
ANAC58
--------->
At4g35610
<---------
At4g35610
---------->
CDC5
<---------
ALFIN1
ccgtagaagtccagaatcaagccacgtcgactcctcagctagccactccgactcctcagcttgtccctccaactcctcagccggttcctccaactcctca
11576800
<
<
<
-
----
====
====
<----
<----
=====
-----
=====
<-----
------
<-----
<-----
------
<-----
<-----
------
<------
<------
--------
<------
NtERF2
<---------
LBD16
--------->
ATERF1(1)
------>
NtERF2
<---------
RAP2.3(1)
--------->
ETT(2)
<---------
DAG2
--------->
ANAC58
<---------
DEAR3(1)
------>
NtERF2
--------->
ANAC58
<---------
ETT(2)
--------->
LBD16
------>
ZmHOX2a(1)
<-----------
HVH21
<---------
ALFIN1
--------->
ARR14(2)
===============
--------->
DEAR3(1)
------>
MYB83
<-----------
RAV1(1)
<---------
ATERF1(1)
<---------
TOE1(2)
<-----------------
AGL1
=================
<---------
ARR11(3)
<---------
ANAC46
<---------
ARR14(2)
<---------
At4g35610
<-----
-------->
ANAC58
<---------
LBD16
<---------
ANAC55(2)
<---------
At4g35610
<--------
-------->
ANAC58
<---------
GLK1(2)
--------->
ANAC55(2)
<----------
DOF2
=================
xxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<-------
TEIL
------>
MYB46(1)
<---------
ARR11(3)
------>
ZmHOX2a(1)
gcaagaccctccgccttctccagttcaagagtctcgggttcacaatcacctatcctctcaaggcaataactttgatgctgatgctcctctgtcgccggat
11576900
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AGI:
At5g30450.1
Description:
transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 4.3e-19 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Range:
from: 11576433
to: 11579181
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.