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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
MYB46(1)
<---------
ANAC55(2)
<-------
<------
MYB83
--------->
YAB1
---------
----------->
GT1
--------->
ICU4
<--------
--------->
MYB59
<---------
ATHB51
<--------
<---------
ATHB51
---------->
DOF2
<---------
AHL20(2)
<--
---------->
DOF2
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
----
<---------
WOX13(1)
<---------
ATHB12
<---------
YAB1
------->
TEIL
---------
---->
ZAT6
------>
ZmHOX2a(2)
<---------
ICU4
--------->
TOE2(3)
<---------
ICU4
----------->
GT1
tctactaattgatgatccaaagaaaaactcaattatgtcgagataggtaaaaaaacattattttaaaagaaataatgaatttaaaattagtaaataaaat
9035600
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
At4g35610
--
AHL20(2)
--------->
At4g35610
>
AHL20(2)
--------->
SPL7
-
AHL20(2)
<---------
SPL7
-
AHL20(1)
<---------
DAG2
<---------
ANAC46
<---
-------
AHL20(2)
--------->
AHL20(2)
<----------
DOF2
<---------
At5g28300
<-----
----->
AHL20(2)
------>
ZmHOX2a(1)
<----------
DOF2
<-----------
GT1
<--------
>
AHL20(1)
<---------
GLK1(2)
<----------
DOF2
--------->
AHL20(2)
--------->
ICU4
ttaaaatttaaaaattctcctataaattttgtgtctcacaactttctttcaaactttttttcttcaaaaatataccgtatgctgatgaaatttttatctt
9035700
<---------
ZAT14
--------->
At4g35610
--------->
ZAT14
<---------
ALFIN1
<---------
O2
--------->
YAB1
<---------
ALFIN1
<----------
DOF2
<---------
ICU4
--------->
MYB46(3)
--------->
AHL20(2)
<---------
YAB1
<---------
MYB55(2)
<---------
TOE2(3)
--------->
YAB1
------>
MYB46(1)
<---------
ATHB12
<---------
ICU4
------>
MYB83
<---------
REM1(2)
--------->
WOX13(1)
<-----------
GT1
<---------
YAB1
-------->
P
------>
NtERF2
--------
GT1
<---------
AHL20(2)
--------->
YAB1
--------->
MYB46(3)
-----
DOF2
<---------
AHL20(1)
<---------
ICU4
-------->
P
--------->
AtMYB61
---
GT1
--------->
AHL20(1)
<---------
ATHB12
---------->
DOF2
------->
GAMYB
--------->
O2
taccaattaagaatataatcttttgtttccatctcaaatcatcatcatcacctccaaagcgtttagcaaccccaaaaccaaccacttggcgactacacag
9035800
---------
---------->
DOF2
<---------
ICU4
--------->
TOE2(3)
--------->
YAB1
----------->
GT1
<---------
ZAT14
<---------
YAB1
--------->
ANAC58
--------->
ICU4
<---------
ANAC55(2)
--------->
YAB1
<-----------
GT1
--------->
ANAC58
----------->
GT1
<---------
YAB1
<---------
YAB1
tattttactcaaaacatcacaagtttctatgaaacgtaaaacgatgagtttagtaaaaaaaaactagagattatagtcagaaaaactataataataagaa
9035900
----------->
GT1
<---------
ANAC46
--------->
MYB59
<---------------
AGL15
==========================================================
MADS_MADS
<---------------
AGL15
--------------->
AGL15
--------------->
AGL15
----------------->
AGL2
----------------->
AGL1
------------>
CBF
<-----------------
AGL2
----------------->
AGL1
<-----------------
AG
----------------->
AGL3
----------------->
AGL3
<---------
ARR14(3)
----------------->
AGL2
--------->
ARR14(3)
<-----------------
AGL3
<---------
ARR11(3)
===========================================================
MADS_MADS
<-------
TEIL
===========================================================
MADS_MADS
--------->
TOE2(3)
<---------
GLK1(1)
--------->
ARR11(3)
--------->
TOE1(3)
--------->
GLK1(1)
--------->
GLK1(2)
>
YAB1
--------->
MYB52(1)
<----------
DOF2
<------------
CBF
<-----------
ARR10
--------->
YAB1
gataacattaaacggatagattcatgtctcttttttgaaatccaaaattgggtaaaatccaaaaaccaaaatcttgccaaatgccaataagagcaaaaat
9036000
<
*
TSS
=========
--------->
ZAT14
------>
ZmHOX2a(2)
<---------
ZAT14
--------->
GLK1(1)
<----------
DOF2
<---------
AtLEC2
--------->
ARR11(3)
<----------
DOF2
<---------
ICU4
--------->
ZAT6
<-----------
GT1
<---------
ARR11(3)
ccaaactttcctttctcttc
actattacacaatgaaatcaacactacattttcacatcaaaatcacattccttcc
atggccttcttctccatgatctcca
9036100
--------->
HSFB2a(1)
<---------
HSFB2a(1)
--------->
HSFC1(2)
<---------
HSFC1(2)
--------->
ANAC46
---------->
DOF2
--------->
REM1(1)
--------->
ANAC58
--------->
LBD16
<----------
DOF2
------>
ZmHOX2a(1)
--------->
ANAC58
<---------
HSFB2a(2)
--------------------->
WRI1
<<<<<<<<<
TBF1
--------->
HSFB2a(2)
---------
YAB1
------>
ZmHOX2a(1)
<---------------
AGL15
<---------
LBD16
==========================
HOX2a_HOX2a
--------------->
AGL15
------>
ZmHOX2a(1)
<---------
ALFIN1
ttctccttggctttgttatctcctccttcatcttcatcttcttcttcaagaaacttctctccttctccagaaagaacatgtctgaagtctccactctccc
9036200
----------->
GT1
<------
MYB83
<------
MYB46(1)
<---------
AtMYB61
--------->
MYB46(2)
<---------
MYB46(3)
<------------------------
ANAC81
<---------
TOE2(2)
--------->
LBD16
----------------->
AGL1
<---------
TOE1(2)
<---------
TOE1(2)
<-----------
GT1
--------->
ATHB12
<--
<-----------
RAV1(2)
<-----------
GT1
<-------
TEIL
<------
ctctgttccag
gttttttttttttttttttccgattttgtaatctgggttttgcgattcataggtttggtgactacttctgtttcaaagtttgaaacttt
9036300
------>
ZmHOX2a(1)
<---------------
AGL15
---------->
DOF2
--------------->
AGL15
<----------
DOF2
=================
--------->
TOE2(3)
<----------------
<---------
ARR11(3)
<----------------
--------->
ARR11(3)
<---------
REM1(1)
<----------------
------>
ZmHOX2a(2)
<------
MYB46(1)
<---------
ANAC46
<---------
ARR11(3)
<---------
ANAC46
<---------
ANAC58
<---------
HSFB2a(2)
--------->
HSFB2a(2)
<---------
TOE2(3)
--------->
GLK1(1)
--------
DOF2
--------->
HSFB2a(2)
<----------
DOF2
<------
MYB83
<---------
GLK1(1)
----
DOF2
<----------
DOF2
--------->
ARR11(3)
--------->
MYB59
<---------
ZAT6
<---------
ANAC58
ctttgattctagtgatttatggaactaaaaatttgatctttgagaactttaaaagttgggtttttgatgtag
tggtaccagggtttcctgttattgggaa
9036400
---------->
DOF2
--------->
YAB1
--------------->
AGL15
<---------------
AGL15
=====================================================================================
MADS_MADS
-
AGL2
<-----------
HVH21
<-----------
GT1
-
AGL1
---------->
DOF2
--------->
ZAT6
------>
ZmHOX2a(1)
-
AGL3
<---------
MYB52(2)
<----------
DOF2
<----------
DOF2
--------->
ZAT6
<<<<<<<<<
TBF1
cttgctgcaactaaaagagaagaaacctcacaagactttcactagatggtcagagatttatggtcctatttactctataaagatgggttcttcttctctt
9036500
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AGI:
At5g25900.1
Description:
GA3 (GA REQUIRING 3); oxygen binding. Identical to Ent-kaurene oxidase (KO1) [Arabidopsis Thaliana] (GB:Q93ZB2;GB:O81188;GB:Q9S7C8); similar to CYP71B35 (cytochrome P450, family 71, subfamily B, polypeptide 35), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61271.1); contains InterPro domain Cytochrome P450, E-class, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128)
Range:
from: 9036021
to: 9038409
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.