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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
ZmHOX2a(1)
<---------
LBD16
=====================================
HOX2a_HOX2a
===============
HOX2a_HOX2a
==================================
HOX2a_HOX2a
===================
HOX2a_HOX2a
===================================
HOX2a_HOX2a
================
HOX2a_HOX2a
--------->
GLK1(1)
<------
ZmHOX2a(2)
====================
HOX2a_HOX2a
<---------
GLK1(1)
<---------
ARR14(3)
--------->
ARR14(3)
<---------
ARR14(2)
--------->
ARR11(3)
<------
ZmHOX2a(1)
--------->
LBD16
===================
HOX2a_HOX2a
====================
HOX2a_HOX2a
<------
NtERF2
--------->
ARR14(2)
--------->
LBD16
<---------
ARR11(3)
--------->
DEAR3(1)
------>
ZmHOX2a(2)
<---------
GLK1(1)
--------->
GLK1(1)
--------->
GLK1(1)
<---------
GLK1(1)
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
<-------
<---------
MYB52(1)
================================
HOX2a_HOX2a
--------->
TOE2(3)
-------->
TOE2(3)
=================================
HOX2a_HOX2a
<------
ZmHOX2a(1)
>
TEIL
---------->
DOF2
<---------
LBD16
----------->
ARR10
<------
ZmHOX2a(1)
<---------
ttcgttaatttcccaaagacggaggaaatcgccggaggaagcgaggagatctccggaggaaggacgacggagagaaggaggactgaacattagctttgtt
8372500
<---------
HSFB2a(2)
<---------
LBD16
<-------
TEIL
--------->
GLK1(2)
<-------
GAMYB
--------->
ARR14(1)
--------->
MYB111(2)
<---------
GLK1(2)
--------->
MYB52(2)
<---------
ARR14(2)
--------->
MYB55(2)
--------->
ARR11(1)
<---------
MYB46(3)
<---------
TOE2(3)
--------->
ARR14(2)
--------->
YAB1
<---------
MYB55(1)
<------
ZmHOX2a(1)
----------->
ARR10
<-----------
HVH21
<--------
P
<-----
----
RAV1(1)
<------
ZmHOX2a(1)
--------->
MYB52(1)
<-------
GAMYB
------
-
DOF2
<------
ZmHOX2a(1)
--------->
CCA1(2)
------->
GAMYB
---------->
DOF2
<---------
RAP2.6(2)
<--
ggaggataaggatgctcgaaggagagattcgggagaggcttaacggtcattgaatcggaatcgaaagagagaatgtcgatgcggttgttgtaatcttcga
8372600
<
--------
<-------
<-------
GAMYB
<---------
MYB46(3)
<---------
DEAR3(2)
<---------
DEAR3(1)
<------
NtERF2
<---------
RAP2.3(1)
<---------
ERF1
------>
NtERF2
<---------
RRTF1(1)
<------
NtERF2
<---------
RRTF1(3)
------>
NtERF2
<---------
ANAC46
<---------
DEAR3(1)
<---------
bZIP60(1)
--------->
SPL7
<---------
O2
--
----------->
HVH21
<---------
RAP2.3(3)
--------->
HSFB2a(1)
<---------
RRTF1(2)
--------->
HSFC1(2)
<------
ZmHOX2a(1)
--------->
CCA1(2)
<---------
DEAR3(1)
--------->
At4g35610
--------->
LBD16
<------
NtERF2
<---------
RAP2.6(2)
<---------
At4g35610
<---------
LBD16
<---------
ANAC58
<---------
RAP2.3(2)
<---------
HSFB2a(1)
----------->
HVH21
--------->
ANAC58
<---------
ARR14(2)
--------->
ATERF1(2)
<---------
HSFC1(2)
<-----------
HVH21
--------->
ANAC58
--------->
ARR14(2)
<---------
ATERF1(2)
----
HSFB2a(2)
--------->
GLK1(2)
---------->
DOF2
<---------
ANAC46
----------->
HVH21
--->
HSFB2a(2)
--------->
ARR14(2)
--------->
At4g35610
<---------
ANAC46
<---------
TOE1(2)
<-
----
ZmHOX2a(1)
<---------
ARR14(2)
<---------
At4g35610
<---------
ANAC58
<---------
ANAC46
-----
ggaagcttccgacggcgattctgtgaccggaggatgagcggagagaagagaaagccatggcgtagagtggatatggtgagtcgtatgtgacggcggtttc
8372700
--------->
GLK1(2)
--------->
ARR14(2)
<---------
At4g35610
--------->
MYB52(1)
<---------
ANAC58
------>
ZmHOX2a(2)
<---------
ANAC58
--------->
ANAC46
------
ZmHOX2a(2)
--------->
At4g35610
--------->
ALFIN1
<---------
ANAC58
->
ARR14(2)
<---------
ARR14(2)
--------->
AtLEC2
<---------
YAB1
<---------
ANAC58
--
ARR14(2)
------->
TEIL
<---------
YAB1
<-----------
RAV1(1)
---------->
ID1
------->
ARR14(2)
--------->
ZAT2
<---------
AtMYB61
--------->
CCA1(2)
--------
ARR14(2)
<---------
At4g35610
--------->
ALFIN1
--------->
ARR14(2)
<------
ZmHOX2a(1)
------------>
AGL1
<---------
ZAT2
<---------
GLK1(1)
<---------
ARR14(2)
---------->
DOF2
cgatctggataacgaatctggagctgaattatccat
ggaaatgtgtggtgctgattcgattcgagatttggcttcttcacgacgaaagtgagaggagagt
8372800
<-------
<----------
DOF2
<-----------
GT1
--------->
ARR11(3)
--------->
CCA1(2)
<---------
ARR11(1)
<---------
DEAR3(1)
--------->
GLK1(2)
<---------------------
WRI1
--------->
ARR11(3)
<---------
ARR14(2)
----------->
GT1
--------->
ATERF1(1)
<---------
ARR11(3)
<---------
ARR14(2)
<---------
YAB1
<---------
ARR11(3)
--------->
ARR14(2)
--------->
ARR14(2)
--------->
YAB1
<------
NtERF2
<---------
ICU4
<-----------
HVH21
--------->
CCA1(2)
*
TSS
<---------
ANAC46
--------->
YAB1
----
<---------
TOE2(3)
<---------
GLK1(2)
--------->
ICU4
<------
NtERF2
--------->
WOX13(1)
<----
tttgaggtcagtgtcagtcggatttttcaagagacggagaaataatcaat
ggagacggcgtagatataaaccctctggattaatcagtatcttttaatgt
8372900
--------->
ZAT6
<------
ZmHOX2a(2)
==============
HOX2a_HOX2a
<---------
AHL20(2)
<---------
ICU4
--------->
ATHB51
--------->
ATHB12
-------->
ATHB1
--------->
TOE2(3)
-------->
HAHB4
--------->
TOE1(3)
<---------
YAB1
--------->
YAB1
<---------
TOE1(3)
<---------
ATHB51
<------------
CBF
<---------
TOE2(3)
<---------
ATHB12
--
TOE2(3)
<---------
AHL20(2)
--------->
ICU4
--->
TEIL
<----------
DOF2
------------>
ATHB5
-----
CCA1(2)
<---------
At4g35610
<-----------
GT1
<---------
MYB59
<------
ZmHOX2a(1)
atctattgataatgggcttctgtatattcagataatgggccttttattttaacgttaagagctatagaatggcctaattattggatcactaggatgacat
8373000
<---------
YAB1
<---------
ANAC58
<---------
ANAC58
--------->
YAB1
<---------
AHL20(1)
<--------
HAHB4
--------->
AHL20(1)
--------->
ICU4
--------->
AHL20(2)
<---------
ATHB12
<---------
AHL20(2)
---------
----------->
HVH21
--------->
AHL20(2)
--------->
ARR11(3)
<---------
ANAC55(2)
<---------
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
ICU4
--------->
YAB1
--------->
YAB1
---
--------->
TOE2(3)
--------->
YAB1
--------->
At4g35610
<---------
TOE2(3)
--------->
ZAT6
--------->
ANAC55(2)
<-----------
GT1
<---------
At4g35610
<---------
YAB1
<--
gaaacactaacaacattaatatgtgacactctaatcattttactaacaattgtctaattcagctaaaataaattgtttgtgattaagataatcaacaatc
8373100
<---------
YAB1
--------->
YAB1
<---------
ICU4
--------->
ICU4
<---------
YAB1
--------->
YAB1
<---------
AHL20(2)
--------->
ARR11(3)
<---------
ICU4
<---------
AHL20(2)
--------->
AHL20(2)
--------->
HSFC1(2)
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(1)
<---------
HSFC1(2)
<---------
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
HSFB2a(1)
<---------
YAB1
<---------
AHL20(1)
--------->
At5g28300
--------->
HSFB2a(1)
>
MYB46(3)
--------->
ICU4
--------->
AHL20(2)
<-----------
GT1
---------->
DOF2
--->
ZmHOX2a(1)
----------->
GT1
<----------
DOF2
<---------
AHL20(2)
--------->
ANAC58
--------
DOF2
<---------
TOE2(3)
---------->
DOF2
----------->
GT1
--------->
ANAC58
cttttttattattattattaagaaaatgtaaaatttattcgaaaaaagcttttaacattcggtaaataatttgcatacaatttttcaagaaagttctact
8373200
<-------
TEIL
<---------
ARR14(2)
--------->
YAB1
--------->
ARR14(2)
--------->
ZAT2
<------
ZmHOX2a(2)
<---------
ZAT2
--------->
CCA1(2)
--------->
HSFB2a(1)
--------->
AGP1
--------->
HSFC1(2)
<---------
HSFC1(2)
<---------
ARR11(3)
<---------
HSFC1(2)
--------->
HSFC1(2)
--------->
ARR11(3)
------>
MYB83
<-------
TEIL
--------->
ARR14(2)
<---------
ZAT6
------>
MYB46(1)
<---------
TOE1(2)
<---------
ARR14(2)
<----------
DOF2
---------->
DOF2
--------->
AtLEC2
<---------
CCA1(2)
----------->
ARR10
cccctttagtgtttatattaaagcaaaccaagcttccatgcattcatcgtagcttctatctccttgttcacgaatagagaagatccagattcaaatttgt
8373300
<-----------
RAV1(1)
<------
NtERF2
--------->
At5g28300
<---------
DEAR3(1)
<------
NtERF2
<---------
ATERF1(1)
--------->
LBD16
------>
NtERF2
<---------
DEAR4(2)
<---------
ERF1
<---------
RAP2.3(1)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
<---------
RAP2.3(2)
--------->
ATERF1(2)
--------->
DEAR3(1)
<---------
DEAR3(1)
--------->
ATERF1(1)
<---------
LBD16
<------
NtERF2
--------->
DEAR4(2)
--------->
DEAR3(2)
--------->
ERF1
--------->
ORA47(2)
<------
ZmHOX2a(2)
--------->
RAP2.3(1)
<---------
ARR11(3)
<---------
ATERF1(1)
==================================
------>
NtERF2
--------------->
AGL15
<---------
RRTF1(1)
<---------------
AGL15
<---------
RAP2.3(1)
<-----------
RAV1(1)
--------->
ANAC46
<---------
ANAC46
--------->
ANAC55(2)
<---------
KAN4(2)
-----
--------->
At4g35610
------>
NtERF2
<---------
ANAC46
<-----------------
AGL1
------>
ZmHOX2a(2)
==================================================================================
MADS_MADS
<----
<-----------------
AGL3
<---------
ATERF1(2)
<---------
ANAC55(2)
----------->
GT1
----------
ttgtcaatatttggaagcagttgcgccggcggtaatggtgcctctccatgtctcgtattgttgctctctctccatatggaataaacgcgatctcaaaggt
8373400
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AGI:
At5g24520.1
Description:
TTG1 (TRANSPARENT TESTA GLABRA 1); nucleotide binding. Identical to Protein TRANSPARENT TESTA GLABRA 1 (TTG1) [Arabidopsis Thaliana] (GB:Q9XGN1;GB:Q5PP66;GB:Q9FT87); similar to ATAN11 (ANTHOCYANIN11), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G12910.1); similar to transparenta testa glabra 1 protein [Matthiola incana] (GB:CAE53274.1); similar to transparent testa glabra 1 isoform 2 [Brassica napus] (GB:ABP04014.1); similar to transparent testa glabra 1 isoform 1 [Brassica napus] (GB:ABP04011.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contain
Range:
from: 8370590
to: 8372850
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.