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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
RVE1(1)
<---------
CCA1(1)
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
ATHB12
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
WOX13(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
AHL20(2)
<-----------
GT1
<------
MYB83
--------->
ARR11(3)
<---------
AHL20(2)
<---------
YAB1
<------
MYB46(1)
xxxxxxxxxxxxxxxxxxxx
--------->
AHL20(2)
--------->
AHL20(1)
--------->
MYB59
xxxxxxxxxxxxxxxxxxxx
--------
ARR11(3)
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---
------->
ARR11(3)
--------->
AHL20(2)
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
------
YAB1
<---------
ANAC58
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
ARR11(3)
------
TOE2(3)
--------->
AHL20(2)
------->
TEIL
<---------
AHL20(2)
<---------
ARR11(3)
<---
-->
ICU4
<---------
ANAC46
--------->
ICU4
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
AHL20(1)
agatttaattgatttcgtatataaaatatgaaattattttacgaacttatttgtttataatttggtaacagatagatatttgaatattcagtatattttg
8354300
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<------
ZmHOX2a(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
AGP1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
<----------
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------->
HVH21
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<----------
DOF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--
xxxxxxxxxxxxxxxx>
smallRNA(i)
<--
--------->
ARR11(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<<<<
<---------
ARR11(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
ATHB12
----
<---------
GLK1(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
>>>>
xxxxxxxxxxxxxxxx>
smallRNA(i)
---------->
DOF2
----
--------->
GLK1(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
----
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---
=================================
HOX2a_HOX2a
<---
<------
ZmHOX2a(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<----
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
CCA1(2)
<-----
--------->
MYB59
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
------->
TEIL
--------->
MYB59
----
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
GLK1(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<--------
HAHB4
----------->
GT1
--------->
TOE1(3)
>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
ATHB12
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
YAB1
<---------
YAB1
--------->
ARR11(3)
-----
------
ANAC58
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
TOE2(3)
------
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
-------
cttcagattaggaaatctttgatgacccgtctttagatccaataagccctataattaagagatgaatattgtcgttaaatgattttggtaaccttaatga
8354400
<------
ZmHOX2a(1)
---------->
DOF2
------->
TGA2(2)
---------
TGA1
<<<<<<
HY5
---------->
DOF2
------
ANAC55(2)
<---------
YAB1
----->
ANAC55(2)
--------->
YAB1
>>>>>>
HY5
--------->
AHL20(2)
----->
TGA2(1)
<---------
YAB1
----->
O2
<---------
AHL20(2)
------
O2
--------->
ARR11(3)
--------->
AHL20(1)
------
bZIP60(1)
--------->
AHL20(2)
------
TGA2(1)
<---------
AHL20(1)
-------
STF1
<---------
AHL20(2)
<---------
AHL20(2)
----
TGA2(2)
--------->
AHL20(2)
----------->
GT1
----------->
GT1
----->
bZIP60(1)
<---------
AHL20(2)
<---------
ANAC55(2)
<---------
TOE1(3)
<xxxxxxxx
------>
STF1
--------->
AHL20(2)
--------->
ANAC55(2)
<---------
TOE2(3)
<-----------
GT1
---->
TGA1
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
AHL20(2)
----
cgtcataaaaggattttgtttttgattaaatttttctaatggcattgttatgtaattaattataaaagttaaggttatatataaaatatactttccaaat
8354500
<---------
MYB52(1)
--------->
At5g28300
----------->
GT1
==============================
MYC_MYB
<------------
MYB.PH3(1)
<---------
DOF5.7(2)
----------->
HVH21
<------
MYB83
--------->
YAB1
--------->
ANAC55(2)
----------->
GT1
<---------
ANAC55(2)
--------->
TOE1(2)
<---------
ARR14(2)
<------
MYB46(1)
<---------
O2
--------->
GLK1(2)
---
--------->
MYB59
--------->
O2
--------->
ARR14(2)
----
--------->
MYB46(2)
--------->
TGA1a
---------->
DOF2
-----
<------
ZmHOX2a(1)
----------->
GT1
--------->
ATHB12
<---------
GLK1(2)
------
<---------
TOE1(2)
--------->
MYB52(2)
<-------
TEIL
<---------
AHL20(2)
-----------
xxxxxxxxxxxx
smallRNA(si3)
=================================
bZIP_DOF
---------->
DOF2
----->
AHL20(2)
--------->
MYB52(1)
<---------
TGA1a
--------->
AHL20(2)
--------->
MYB52(1)
aatatagtaggattaggtaacggttaattgtaatttcaaacgtgagattcattgtgcaaattaaagagaatctagtaaaaaataaaactaaagggtaaaa
8354600
>>>>>>>>>>>>>>>>>
LFY
<------
ZmHOX2a(2)
<---------
GLK1(1)
--------->
ARR11(3)
--------->
GLK1(2)
--------->
CCA1(2)
----------->
TBP
<---------
ZAT18
--------->
ICU4
--------->
YAB1
<---------
YAB1
<-------
TEIL
---------->
DOF2
<---------
YAB1
--------->
KAN4(1)
--------->
YAB1
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ARR11(3)
--------->
AHL20(2)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ARR14(2)
-------->
GT1
<---------
ARR11(3)
<-----------
ARR10
--------->
ARR14(2)
------->
GT1
--------->
AGP1
--------->
AHL20(2)
<---------
TOE2(3)
<---------
KAN4(1)
<
---->
DAG2
--------->
CCA1(2)
<---------
AHL20(2)
---------->
DOF2
<---------
KAN4(2)
------>
ZmHOX2a(1)
---->
DOF2
---------->
DOF2
------------>
CBF
----------->
GT1
--------->
ARR11(1)
------------>
CBF
-
>
GT1
--------->
AHL20(2)
<------------
CBF
<---------
GLK1(2)
----------->
ARR10
<-----------
TGA1
<---
agttaaattataaaaagataagatccattgtgcaattaaagagaatctagttattaaagattagatatgcgaataatcgtcgtcacaatctcttcctcat
8354700
<-------
<---------
MYB52(1)
<---------
YAB1
<------
MYB83
---------
<---------
AHL20(2)
<---------
SPL7
<------
MYB46(1)
--------->
AHL20(2)
<---------
DEAR3(2)
<---------
MYB46(3)
*
TSS
<---------
AHL20(2)
------->
TEIL
--------->
SPL7
<--------
P
<-------
GAMYB
---------
AHL20(2)
<---------
AHL20(2)
<---------
ARR14(2)
--------->
ANAC58
------>
ZmHOX2a(2)
-------->
AHL20(2)
--------->
AHL20(2)
--------->
ARR14(2)
--------->
ANAC58
<---------
MYB46(3)
------
ICU4
<---------
AHL20(2)
<---------
CCA1(2)
--------->
ANAC46
<---------
AtMYB61
a
tttatttctctggtcttatttatttattaataggcctctctgaatcttcttcggtacgagtatgagccacgatagagagttggtttcgatcgttagggg
8354800
<---------
ALFIN1
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
LBD16
--------->
RAP2.3(2)
--------->
RAP2.6(2)
--------->
DEAR3(1)
<---------
ANAC55(2)
--------->
RRTF1(2)
--------->
DEAR3(1)
--------->
RAP2.3(1)
--------->
MYB46(3)
-
--------->
ATERF1(1)
--------->
MYB52(1)
-
--------->
ANAC46
<---------
ALFIN1
<-----
--------->
LBD16
------->
GAMYB
--------->
ANAC46
------>
NtERF2
<---------
MYB111(2)
-------
--------->
At4g35610
--------->
At5g28300
--------->
ANAC58
--
<---------
ATERF1(1)
--------->
RAP2.3(2)
--------->
bZIP60(2)
<-------
GAMYB
--------->
ANAC46
--------->
RAP2.6(2)
--------->
ORA47(1)
<---
--------->
MYB52(2)
------>
NtERF2
--------->
DEAR3(1)
------->
GAMYB
--------->
ANAC58
--------->
MYB55(2)
<------
NtERF2
--------->
DEAR3(2)
--------->
AtMYB61
-------
<---------
MYB46(3)
--------->
At4g35610
--------->
ANAC46
--------->
MYB46(3)
<-------
<---------
WRKY38(1)
--------->
DEAR3(1)
--------->
MYB46(3)
<---------
MYB52(2)
--------
<---------
WRKY12
<---------
LBD16
<---------
DOF5.7(2)
-------->
P
--------->
ANAC58
<-
<<<<<<<<<<
WRKY38
--------->
WRKY12
<---------
ALFIN1
<---------
At5g28300
<---------
MYB55(2)
--------->
MYB52(1)
<<<<<<<<<<
WRKY26
--------->
WRKY38(1)
--------->
ANAC58
--------->
RAP2.3(1)
--------->
DREB2C(2)
<----
<<<<<<<<<<
WRKY43
<---------
MYB52(1)
<---------
ALFIN1
------->
GAMYB
<---------
MYB55(2)
--------->
ANAC58
--
ANAC46
<-------
TEIL
--------->
ARR14(2)
--------->
DOF5.7(2)
--------->
MYB46(3)
--------->
ANAC55(2)
>
MYB52(2)
----------->
HVH21
<---------
ALFIN1
--------->
AtMYB61
--------->
TOE2(3)
<------
NtERF2
<-----
tattttggtcaattgac
atgttcgttggcccatctccgccgcacacaccactcgttaaccgccgtaacatcaacaaccaccggcctcgtaacgcaaccgt
8354900
<---------
DAG2
<----------
DOF2
-------->
DEAR3(1)
-------->
AtMYB61
------
TGA1
-->
ANAC46
----------->
RAV1(2)
<---------
DEAR3(2)
------->
At4g35610
<------
NtERF2
------
ALFIN1
------>
NtERF2
<----
>
GAMYB
--------->
ANAC55(2)
<---------
DEAR3(1)
--------->
GLK1(2)
-----
AtMYB77
<---------
DEAR3(1)
<---------
At4g35610
--------->
ARR14(2)
->
MYB46(3)
<---------
LBD16
<-----------
HVH21
<---------
GLK1(2)
--------
At4g35610
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
<---------
ARR14(2)
-----
MYB52(1)
<-----------
GT1
<---------
DAG2
--------->
At4g35610
----------->
ARR10
------
HVH21
<---------
RVE1(1)
<----------
DOF2
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
cacctccgctttacctgatattttcctcgcggcggtctctctccttttcctctggtcatctcctaaacctctagtctctcttcctccgaacagattctct
8355000
------>
ZmHOX2a(1)
<---------
ALFIN1
------>
ZmHOX2a(1)
<---------
ALFIN1
------>
ZmHOX2a(1)
=================
HOX2a_HOX2a
====================
HOX2a_HOX2a
=======================
HOX2a_HOX2a
==========================
HOX2a_HOX2a
------>
ZmHOX2a(2)
========================
HOX2a_HOX2a
=====================
HOX2a_HOX2a
<-----------
HVH21
==================
HOX2a_HOX2a
--------->
WOX13(1)
===============
HOX2a_HOX2a
====================================
HOX2a_HOX2a
<------
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
GLK1(1)
<------
NtERF2
<---------
GLK1(1)
<-----------
HVH21
<-----------
ARR10
------>
NtERF2
<-----------
HVH21
<xxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
DEAR3(1)
--------->
O2
==============
HOX2a_HOX2a
--------->
ANAC46
------>
NtERF2
--------->
ARR14(2)
=================
HOX2a_HOX2a
<---------
ARR14(2)
------>
ZmHOX2a(1)
<---------
ARR14(2)
--------->
ANAC46
===========================
HOX2a_HOX2a
--------->
ARR14(2)
<---------
ALFIN1
--------->
DEAR3(1)
------>
ZmHOX2a(1)
<
--------------------->
WRI1
--------->
DREB2C(2)
<---------
ALFIN1
------>
ZmHOX2a(1)
------
DOF2
------>
ZmHOX2a(1)
--------->
DEAR3(1)
------>
ZmHOX2a(1)
--------->
ANAC46
--------->
TOE2(3)
ttccctctaaatcctcgccgtcgatccatcaccgccatgtctcgccgatctcctcctcctcctcctcctactcaacgcttcgctaatcctcaatctctct
8355100
<-
<---
-----
------
<-----
-------
<-------
TEIL
<---------
LBD16
-------
------>
MYB83
--------->
DEAR3(1)
--------->
LBD16
--------->
YAB1
<<<<<<<
ZML2
---
---------
MYB52(1)
------>
MYB46(1)
------>
NtERF2
<---------
LBD16
<-------
TEIL
------------------
ccgattggctcgaatcgcgattaccttccgattcattcgccgcttggggagtcaaaccgggaaccaaaaacgttcataacctctggctagaactctccga
8355200
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AGI:
At5g24460.1
Description:
hydrolase. similar to unnamed protein product [Vitis vinifera] (GB:CAO48568.1); contains InterPro domain NUDIX; (InterPro:IPR015797)
Range:
from: 8354702
to: 8355877
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.