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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
NtERF2
----------->
HVH21
------>
MYB46(1)
------>
MYB83
----------->
RAV1(1)
<-----
<---------
ZAT18
--------->
ANAC46
--------
<---------
YAB1
--------->
AtMYB61
--------->
ICU4
<------
ZmHOX2a(2)
<---------
MYB46(3)
--------->
ATHB12
--------->
ANAC46
----------->
RAV1(1)
----------
<---------
ZAT6
<---------
ICU4
<-----------
HVH21
--------->
LBD16
--------->
ARR11(3)
<---------
ATHB12
--------->
ICU4
--------->
AtMYB61
--------->
ANAC46
<---------
ARR11(3)
---------
TOE2(3)
<---------
YAB1
--------->
ZAT18
<---------
LBD16
---------->
DOF2
>
ID1
<-----------
RAV1(1)
<---------
YAB1
<---------
ALFIN1
<---------
At5g28300
>>>>>>>>>>
MYB80
---
ctaatgaagtagtgttgttgtctatattctgattattagaagagtccaccttcacaccaacattttccgcgacagccat
gatcaaaccaaaagatcaatg
8347800
---------
<--------
-------->
ATHB1
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
----------->
GT1
--------->
ICU4
<---------
AHL20(1)
--------->
ATHB12
<---------
YAB1
--------->
ARR11(3)
<---------
YAB1
--------->
AHL20(1)
<----------
DOF2
--------->
AHL20(1)
--------->
ICU4
--------->
ICU4
----
ATHB12
<---------
AHL20(2)
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
->
WOX13(1)
<------
MYB46(1)
<---------
TOE1(3)
----------->
GT1
<
-->
CBF
<------
MYB83
----------->
TBP
<---------
TOE2(3)
----------->
GT1
-
---->
TEIL
----------->
GT1
<------
ZmHOX2a(1)
--------->
AHL20(2)
<------
aatctttagatgttggtaataaaatataaaaaaacaactcatgcactggagaaaggttagaggatttaaggagatgattaaaatagaggaaaaattatta
8347900
---
<--
---
<--
----
<---
------
<-----
<------
-------
<-------
<---------
ARR11(3)
--------
<---------
GLK1(2)
<-------
<-----------
GT1
--------->
AHL20(2)
<----------
DOF2
--------->
ARR11(3)
--------->
ANAC58
--------
>
YAB1
----------->
ARR10
<---------
RVE1(1)
--------->
ANAC58
---------
-
ICU4
--------->
YAB1
--------->
ARR11(3)
--------->
AHL20(2)
<---------
AHL20(1)
---------------
AGL15
<---------
GLK1(2)
<---------
AHL20(2)
--------->
ANAC58
--------->
AHL20(1)
-------------->
AGL15
<---------
ARR11(3)
<---------
YAB1
----------->
GT1
------------>
CBF
---
YAB1
------------>
CBF
--------->
ICU4
<---------
AHL20(2)
--------->
ANAC58
<---------
AHL20(2)
tgctctttatagctaaaacaattagattttctagtcaagatttttatttcatttttttttgacattagtcaagaaaataagcaaatacaataaattataa
8348000
<---------
AHL20(2)
--------->
AHL20(2)
------>
AHL20(2)
-------
ICU4
------>
ATHB51
-------
AHL20(2)
----->
ICU4
------
YAB1
<--------
--->
YAB1
--------->
TOE2(3)
<---------
AHL20(2)
----
ICU4
<-----------
GT1
--------->
AHL20(2)
---
YAB1
--------->
YAB1
<---------
YAB1
-->
ICU4
<---------
ICU4
--------->
GLK1(2)
--
AHL20(1)
--------->
ICU4
<---------
GLK1(2)
--
->
AHL20(1)
<---------
At4g35610
---------->
DOF2
<---------
ARR14(2)
<---
--
AHL20(2)
--------->
At4g35610
<-----------
GT1
<---------
YAB1
--------->
ARR14(2)
<----
->
AHL20(2)
<-----------
HVH21
<-----------
GT1
----------->
GT1
<------
ZmHOX2a(1)
---------
>
YAB1
<----------
DOF2
<---------
AHL20(2)
--------->
DAG2
--------->
YAB1
<---------
AHL20(2)
ttatttaaattttctttgtgtcagcacaatttctgcatttttttcttactacatataaagttattattacattaataggattctgtttatttttttaatt
8348100
--------->
TGA1a
<---------
O2
<------
NtERF2
<---------------
AGL15
--------->
SPL7
--------------->
AGL15
<---------
MYB52(1)
--------->
YAB1
<-----------
HVH21
--------->
TOE2(3)
--------->
AHL20(2)
<---------
CCA1(2)
------------>
CBF
--------->
O2
-
AHL20(2)
<-----------------
AGL2
------------>
CBF
<---------
DEAR3(2)
------->
ZAT6
<-----------------
AGL3
<---------
ATHB12
<---------
DEAR3(1)
---
--------
GT1
<-----------------
AGL1
--------->
WOX13(1)
<---------
ETT(2)
--------->
GLK1(2)
-----
ICU4
<-----------------
AG
--------->
AHL20(2)
<---------
ICU4
--------->
RAP2.6(3)
<---------
GLK1(2)
>
AHL20(2)
<-----------
GT1
----------->
GT1
----------->
GT1
--------->
MYB52(1)
--------->
YAB1
atctctatcttatttatctagttttggtaagagagaaaaaaaaaatcgaaccggttaatcaattcaataccggtcggccaagtgtctctcagaatttgac
8348200
---
---
----
----
<----
-----
-----
<---------
MYB52(1)
<---------
DEAR3(1)
<---
<----------
ID1
--------->
HSFC1(2)
<------
--------->
ARR14(2)
<---------
HSFC1(2)
--------
<---------
MYB52(1)
--------->
LBD16
------>
NtERF2
-----
------>
ZmHOX2a(2)
*
TSS
<---------
ANAC46
<---------
MYB46(3)
<------
ZmHOX2a(2)
<---------
MYB52(1)
<---------
ANAC58
--------->
ABI4(2)
<---------
ARR14(2)
--------->
TOE1(3)
<---------
ANAC58
<---------
DEAR3(1)
<
--------->
ARR14(2)
--------->
TOE2(3)
<------
ZmHOX2a(1)
---------->
DOF2
<-------
--------->
CBF
--------->
GLK1(2)
--------->
DOF5.7(2)
----------->
GT1
--------->
AtLEC2
<------
NtERF2
----
cccaattcgatccgatattctgaaaacgacaacgttagcatttc
gccatttagaacaggaaatagtttccgtgcaaaagcttcggtggctcttctcccac
8348300
<---------
MYB52(1)
<---------
MYB52(1)
<---------
SPL7
<---------
SPL7
--->
NtERF2
------>
NtERF2
------>
ABI4(1)
<-----------
HVH21
----->
DREB2C(2)
--------->
RAP2.3(3)
--->
GAMYB
--------->
DEAR3(1)
-----
MYB55(2)
--------->
DEAR4(2)
---->
MYB46(3)
--------->
RAP2.3(1)
--------->
MYB52(1)
---->
DEAR3(2)
--------->
DEAR3(1)
------>
ZmHOX2a(2)
<-----------------
AGL2
------
ALFIN1
--------->
DEAR3(2)
<------
ZmHOX2a(2)
--------->
At4g35610
---
ALFIN1
--------->
MYB46(3)
--------->
ARR11(3)
<---------
At4g35610
->
MYB46(3)
--------->
SPL7
<---------
ARR11(3)
--------->
MYB46(3)
---->
DEAR4(2)
<---------
PCF5
--------->
AGP1
----------->
HVH21
---------
ANAC46
<---------
SPL7
--------->
AHL20(2)
<------
ZmHOX2a(2)
--
MYB55(2)
--------->
LBD16
<---------
AHL20(2)
<---------
ARR14(2)
--------->
HSFB2a(2)
----->
DEAR3(1)
<---------
LBD16
<----------
DOF2
--------->
ARR14(2)
<---------
HSFB2a(2)
cgccgtatgttcttccagcgctccggaccgccgtctggtctgactttaatttgagatctattccgatccctaacagctacttctg
gtatactatcgttct
8348400
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<-------
--------->
AtMYB61
<---------
YAB1
<--------
<---------
ALFIN1
------>
ZmHOX2a(2)
--------->
YAB1
<--------
ctctctctaacacctctgcgtatttggatcgtattgactagagtcttcccattatacttgcatcgttctctcttccatggtttcgaacttgtttaagctt
8348500
<---------
ANAC58
<----
<---------
ANAC58
--------
--------->
ANAC55(2)
<--------
<---------
ANAC58
--------->
LBD16
<---------
ANAC55(1)
--------->
HSFB2a(2)
--
At4g35610
---------->
DOF2
<---------
ANAC58
<---------
LBD16
-
TOE1(3)
<-----------
GT1
<---------
ANAC55(2)
----------->
ARR10
--------->
MYB52(1)
-
TOE2(3)
<---------
ARR11(3)
<---------
ANAC46
<-----------
RAV1(1)
<----------
DOF2
---------
atagtcttcaataccttctaactatctaaaaggtttcgtgtttcaatttgcttctggtgcgatttgctcagtgttttctttctctaccggaatcagctct
8348600
<---------
ANAC58
<---------
ANAC58
-----
HSFB2a(2)
<---------
ANAC58
<--
->
AGP1
<---------
ANAC58
--------->
GLK1(2)
<---------
YAB1
-
At4g35610
<---------
ARR11(3)
<-----------
GT1
----
>
At4g35610
<---------
AHL20(2)
--------->
ARR11(3)
<---------
ZAT6
<--------
agacaaattgtttgctatgttattgtattcactgggattttggatagtcccagtgaaaatctttcaatcttgttcgtgttacattttctgatttatgaga
8348700
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AGI:
At5g24440.1
Description:
CID13 (CTC-Interacting Domain 13); RNA binding. similar to CID10, RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT3G49390.1); similar to CID10, RNA binding [Arabidopsis thaliana] (TAIR:AT3G49390.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO48581.1); contains InterPro domain Ataxin-2, C-terminal (InterPro:IPR009818); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 8345405
to: 8347779
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g24450.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49410.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ64550.1); contains domain GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 (PTHR13230)
Range:
from: 8348245
to: 8353306
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.