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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
MYB52(1)
<---------
ARR11(3)
<---------
ALFIN1
<---------
SPL7
<----------
DOF2
----------->
RAV1(1)
<---------
ANAC46
<-----------
GT1
<-----------
GT1
----------->
GT1
<---------
ANAC58
<---------
AHL20(2)
<-------
TEIL
------->
GAMYB
---------->
DOF2
<---------
ANAC58
atgagcattattttctttacaagttatttgatacatgtaatgtaaccccacagttagagaaagtaacaaatatgtgtcgtacagttgttttgttctaaaa
7680900
-----
<------
<<<<<<<<<<
WRKY38
<<<<<<<<<<
WRKY43
--------->
WRKY18(1)
----------------->
AGL1
--------->
ATHB12
-------
--------->
YAB1
<---------
YAB1
<<<<<<<<<<
WRKY26
<---------
YAB1
----------->
HVH21
--------->
YAB1
----------------->
AG
<---------
YAB1
---------->
DOF2
--------------->
AGL15
<----------
--------->
YAB1
--------->
ANAC58
<---------------
AGL15
--------->
ATHB12
----------->
RAV1(1)
<---------
TOE2(3)
--------->
ANAC58
======================================
MADS_MADS
tcgcaacaaaaacaatgaccattaacataattttggttcgaacgaaagtgacacagtagctcatctataatgggtatggtcattgcctcattggtcaagt
7681000
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
MYB52(2)
<-------
TEIL
<------
MYB46(1)
--------->
ZAT2
<---------
LBD16
<------
MYB83
<---------
ZAT2
---------->
DOF2
----------->
RAV1(2)
--------->
ATHB12
--------->
ARR14(2)
<---------
AHL20(2)
---->
YAB1
<---------
MYB46(3)
<---------
ARR14(2)
--------->
AHL20(2)
---
ANAC55(2)
----------->
GT1
<---------
At4g35610
<---------
AHL20(2)
-->
ANAC55(2)
--------->
ATHB12
--------->
At4g35610
--------->
ANAC58
<
-
HVH21
---------->
DOF2
--------->
ATERF1(1)
--------->
ANAC58
<
atcatccctggcactaaagattggttaattggggtctgctggatccatattggacctattatctaatatgaacgaaaattatataaaagggcctccaaaa
7681100
-
-
<
<---------
WRKY18(1)
--
--------->
WRKY45
<------
MYB83
---------->
DOF2
<----------
DOF2
<------
MYB46(1)
<---------
DAG2
<---------
ALFIN1
--------->
MYB59
<----------
DOF2
<---------
YAB1
--------->
WRKY12
--------->
ZAT14
-----------
GT1
<-----------
RAV1(1)
--------->
HSFB2a(2)
<---------
MYB52(1)
---------
AHL20(2)
--------->
AHL20(2)
--------->
WRKY38(1)
<----------
DOF2
<---------
ICU4
--------
atttactttactaaaaggcccaatattatgttggcccgactttgaccatacttctaggctcttttttttttgtttggacatcatttcagttcggtctgac
7681200
----------->
GT1
------>
ZmHOX2a(1)
--------
<---------
ANAC46
--------->
TOE2(3)
<------
NtERF2
--------->
ANAC55(2)
--------->
TOE1(3)
------>
NtERF2
<---------
LBD16
<---------
ATHB12
<---------
YAB1
---------
-------->
ARR14(2)
------------>
CBF
<---------
YAB1
--------->
SPL7
-------->
WRKY12
------>
MYB46(1)
--------->
DAG2
<---------
YAB1
---------
---------
ARR14(2)
------>
MYB83
---------->
DOF2
<---------
AHL20(2)
------->
DOF5.7(2)
----------->
RAV1(1)
--------->
TOE1(2)
--------->
AHL20(2)
--->
HVH21
--------->
MYB46(3)
--------->
TOE2(2)
<---------
YAB1
<---------
AtMYB61
cgtttacgggtttttttttcttccaaaccaacaattccttaagtaaaaaaaaaaacataagataaagtatcattcttattttaatagttttggtccgcca
7681300
<<<<<<<<<<<<<<<<<
LFY
--->
RAV1(1)
---------->
DOF2
----------->
RAV1(1)
--
>
ANAC58
------>
ZmHOX2a(1)
--------->
RAP2.6(2)
<--
>
ANAC58
*
TSS
<----------
DOF2
----------->
GT1
--------->
ANAC46
------
gaggcat
aagcatacaaatattcttttctcctaaagttttaagaacagagcaaggttaaaaaaaaaaacacaagtcgcaaca
atggagagagtgatgaac
7681400
<---------
bZIP60(1)
<---------
ANAC58
----------->
GT1
--------->
bZIP60(1)
<---------
ANAC58
<-----------
RAV1(2)
<-----------
HVH21
<-----------
TGA1
<---------
ANAC58
<---------
ANAC58
--------->
ANAC46
<-------
TEIL
<---------
ANAC55(1)
<---------
ANAC58
<--------
--------->
ANAC55(2)
--------->
TGA2(1)
<---------
TOE1(2)
<---------
ANAC46
<---------
TGA2(1)
--------->
LBD16
<---------
ANAC58
<---------
ANAC55(2)
<---------
TOE2(1)
<---------
MYB52(1)
<---------
bZIP60(1)
<---------
TOE1(1)
<-----------
RAV1(1)
--------->
bZIP60(1)
--------->
ANAC46
<----------
ID1
--------->
MYB52(1)
------->
GAMYB
<------
ZmHOX2a(1)
--------->
ANAC58
--------->
DAG2
--------->
MYB46(3)
--------->
ANAC58
<---------
ANAC46
--------->
ARR14(2)
---------->
DOF2
--------->
ANAC46
<---------
WOX13(1)
--------->
TGA2(2)
--------->
ANAC58
------->
YAB1
------>
ZmHOX2a(2)
--------->
ATHB12
--------->
ANAC55(2)
--------->
SPL7
---------
-------
YAB1
----------->
RAV1(2)
<---------
ANAC55(2)
<-----------
GT1
<---------
SPL7
<---------
TOE2(2)
->
TEIL
============================
RAV
--------->
ANAC58
--------->
ALFIN1
<---------
ARR14(2)
atcataaagccaaaacctgatcccaaacaactgttgcgtgattggcaacgcaaattacgtcaggagtgtcgtaacatcgaacgccaaatccgag
gttctt
7681500
------->
TEIL
--------
<-------
--------->
ATHB12
<-----------
GT1
<---------
DAG2
<---------
YAB1
--------->
AHL20(2)
-
ARR14(2)
<----------
DOF2
<---------
TOE1(3)
<---------
AHL20(2)
<-
>
ARR14(2)
<---------
DAG2
<---------
TOE2(3)
<---------
WOX13(1)
<---------
TOE2(3)
<-
ctattttacacatcttctctcgcctttttcttatggtcaatttagggttttcgaaatctaattgaattagatgctagtttagattaattggattgaatct
7681600
<--
<--
<--
<------
MYB46(1)
<--
<------
MYB83
<--
--------->
ANAC58
------>
ZmHOX2a(2)
<---
--------->
ANAC58
--------->
ARR14(2)
<---
------>
ZmHOX2a(2)
<-----------
GT1
<---------
ARR14(2)
<---------
ANAC46
<<<<<<
->
ARR14(2)
<---------
ANAC46
--------->
ARR14(2)
<---------
WOX13(1)
<-----
--
ARR14(2)
<---------
ANAC58
<---------
GLK1(2)
--------->
ATHB12
<------
-------
P
<---------
ICU4
<---------
ARR14(2)
<---------
YAB1
<-----------
GT1
<------
--------
WOX13(1)
<---------
ANAC58
--------->
YAB1
--------->
ARR11(3)
------->
TEIL
--------->
YAB1
ggttgatcgcacccaaaaattgcgagaatttactctgaatcagatttggatcggatgattttgattggtgtatgaatttttcgatttgatcatatgggtt
7681700
-------
ANAC58
-------
ANAC46
-------
ANAC58
----
MYB83
---------->
DOF2
----
MYB46(1)
----------->
GT1
<---------
At4g35610
---
MYB46(1)
---------->
DOF2
--------->
ZAT2
---
MYB83
<---------
YAB1
--------->
GLK1(1)
<---------
TOE2(3)
<<<
MYB98
<---------
TOE2(3)
--------->
CCA1(2)
---------->
DOF2
--
---
P
------->
TEIL
<---------
TOE1(3)
--------->
ARR11(3)
<---------
YAB1
<-----
---
ANAC58
---------->
DOF2
<---------
ARR14(2)
---------->
DOF2
--------->
At4g35610
---
ANAC58
--------->
ICU4
--------->
ARR14(2)
<---------------
AtSPL8
--------->
GLK1(2)
gggtttgaatctatggaatttttaaagttttgattttgttcag
atatacagaaagaagagagaaatgtacagaaagctattaaagaagctgcaaagagga
7681800
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AGI:
At5g22950.1
Description:
VPS24.1. similar to VPS24.2 [Arabidopsis thaliana] (TAIR:AT3G45000.1); similar to putative endosomal Vps protein complex subunit [Oryza sativa (japonica cultivar-group)] (GB:BAC45115.1); contains InterPro domain Snf7; (InterPro:IPR005024)
Range:
from: 7681308
to: 7682906
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.