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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
MYB46(3)
<---------
TOE2(3)
<---------
WOX13(1)
--------->
ANAC58
--------->
YAB1
--------->
AHL20(2)
--------->
ANAC58
<---------
YAB1
<---------
TOE2(3)
<---------
AHL20(1)
<------
MYB46(1)
--------->
YAB1
---------
WOX13(1)
--------->
AHL20(1)
<--------
P
<---------
ATHB51
------
YAB1
<---------
YAB1
--------->
AHL20(2)
<-----------
RAV1(1)
<---------
TOE2(3)
------
AHL20(2)
---------->
DOF2
<---------
YAB1
<------
MYB83
<---------
YAB1
-----
----->
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
<-------
GAMYB
--------->
ICU4
<---------
YAB1
<----
taattgatgacataataagatagtttcccaaagtaattaattgatgatatatgtggttggataagaaattatggtattatcatgtttgcctctcaaattt
6828600
--------->
ARR11(3)
<---------
ARR11(3)
<---------
AHL20(2)
<---------
GLK1(1)
--------->
AHL20(2)
<---------
RVE1(1)
--------->
YAB1
--------->
GLK1(1)
--------->
AHL20(1)
--------->
ARR14(2)
<---------
AHL20(1)
--------->
ARR11(3)
--------->
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
<---------
ARR14(2)
--------->
AHL20(2)
--------->
LBD16
<---------
AHL20(2)
<---------
HSFB2a(2)
<---------
AHL20(2)
----------->
GT1
--------->
HSFB2a(2)
--------->
AHL20(1)
<---------
At4g35610
<----------
DOF2
--------->
AHL20(2)
--------->
At4g35610
<-----------
GT1
<---
<---------
AHL20(1)
--------->
ANAC58
<-----------
GT1
<-----------
GT1
<---------
HSFB2a(2)
---->
AHL20(2)
<-------
TEIL
---------->
DOF2
<---------
AHL20(2)
<---------
GLK1(2)
-----
AHL20(2)
<-------
TEIL
--------->
ANAC58
<---------
WRKY18(1)
--------->
AHL20(2)
--------->
HSFB2a(2)
aaatttaattaattatatacatacacgagtaagctaaataaaagtttgaccacatttcatatgaagaattttatctttccagatatctagaatttgtttt
6828700
<-----------
GT1
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
--------->
ATHB12
<---------
ANAC55(2)
--------->
ANAC46
--------->
YAB1
<---------
REM1(2)
--------->
ANAC58
<-----------
GT1
<-----------
HVH21
<---------
ZAT14
<---------
LBD16
<---------
AHL20(2)
------>
MYB46(1)
--------->
ZAT14
<---------
SPL7
----------->
GT1
<----------
DOF2
--------
GT1
<---------------
AtSPL3
--------->
AHL20(2)
------>
MYB83
<---------
At4g35610
ctctacacagttcattgaagaaaacatagtacggaagagaccagaggttaattaaacgacactttaacctatcacgagagagactgagatgatcaaatca
6828800
<---------
ANAC55(2)
--------->
ANAC58
<---------
ANAC58
--------->
ANAC58
--------->
ANAC55(2)
--------->
AtLEC2
<-----------
GT1
<-------
MYC3
<---------
AHL20(2)
--------->
YAB1
<---------
AHL20(1)
<---------
ATHB12
--------->
AHL20(2)
--------->
TOE2(3)
<---------
ZAT6
<---------
DAG2
<---------
MYB52(1)
--------->
AHL20(2)
---------->
DOF2
<---------
TOE2(3)
--------->
AHL20(1)
--------->
AHL20(2)
------->
MYC3
--------->
ANAC58
<----------
DOF2
---------->
DOF2
--------->
WOX13(1)
--------->
ANAC58
<-----------
GT1
<---------
ANAC58
aatgaaagaaaataaacatcaatcacatgcaaagagtgttcattaagcaaaatcactaagtttgtttttactttattttattacgttacttcaagttttt
6828900
--------->
DAG2
--------->
ANAC58
-----
<---------
ZAT6
----------->
GT1
--------->
ANAC58
-------
----------->
GT1
--------->
ANAC58
-------
<-----------
GT1
---------->
DOF2
<---------
ANAC46
---------->
DOF2
----------->
HVH21
<-----------
GT1
--------->
At5g28300
<---------------------
WRI1
--------->
ANAC58
<---------
ZAT18
tttttatcttcttggtactgtaaaaaaaggagagaaaatagagttggctatgtgtaataagcgaaccaaaagcaagccttccatgactgtgccctcaaga
6829000
<----------
DOF2
----->
DOF2
--------->
YAB1
--------->
TOE2(3)
-->
ANAC58
<-----------
HVH21
xxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<----------
DOF2
-->
ANAC58
------------>
CBF
---------->
DOF2
*
TSS
--------->
WOX13(1)
<---------
YAB1
aagtagctttgttttcaatcccaaactgtcaaagtctctcttc
acctcaagattaatcaaaacatttctctctctatctcatcaatgttactttaaaacc
6829100
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ARR14(2)
<---------
ARR11(1)
--------->
ARR14(2)
<-----------
ARR10
------>
ZmHOX2a(1)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
CCA1(2)
--------->
AHL20(2)
--------->
GLK1(1)
<-----------
GT1
<---------
GLK1(1)
--------->
TOE2(3)
---------->
DOF2
------>
ZmHOX2a(1)
--------->
ANAC46
<---------
CCA1(2)
--------->
TOE2(3)
<---------
ALFIN1
<-----------
GT1
------>
ZmHOX2a(1)
--------->
TOE1(3)
----
aatgctcctcttcttgttcttcatataaaccacatatcctctcctccatatcttaacaatttcatagcaaaccctaaaattgagaaagagatagagagag
6829200
<---------
ANAC46
<---------
TGA2(2)
---------->
DOF2
----------->
RAV1(1)
<------
ZmHOX2a(2)
--------->
MYB52(1)
---------->
DOF2
<------
MYB83
====================
HOX2a_HOX2a
<---------
MYB46(3)
<------
MYB46(1)
--------->
ARR11(3)
--------->
ANAC58
<---------
ANAC58
<---------
MYB46(3)
<---------
ARR11(3)
--------->
ANAC58
<---------
ANAC58
<---------
WOX13(1)
<---------
HSFB2a(1)
--------->
ANAC58
----------->
TGA1
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
<---------
ARR14(2)
--------->
ALFIN1
<------
ZmHOX2a(1)
----
=============
HOX2a_HOX2a
--------->
ANAC58
----------->
HVH21
==========================
------>
DOF2
---------->
DOF2
<------
ZmHOX2a(1)
------->
GAMYB
<---------
HSFB2a(2)
<---------
AtMYB61
aaag
atgggtagaggaaagatcgagataaagaggatagagaacgcaaacaacagagtggtgacgttctcaaagaggaggaatggattggtgaagaaggct
6829300
--------->
YAB1
--------->
ANAC46
------>
ZmHOX2a(2)
--------->
ANAC58
--------->
ARR14(2)
--------->
ANAC58
<---------
ARR11(3)
<---------------
AGL15
<---------
AGP1
--------------->
AGL15
<---------
ARR14(2)
----------------->
AGL1
--------->
ARR11(3)
--------->
AtLEC2
<---------
AtLEC2
<---------
WOX13(1)
------->
TEIL
<------
ZmHOX2a(2)
<-----------------
AG
--------->
ATHB12
<---------
CCA1(2)
--------->
ARR11(3)
<---------
ICU4
--------->
ATHB12
<---------
AtLEC2
<---------
ARR11(3)
--------->
DAG2
<---------
ARR11(3)
<---------
YAB1
=================
HOX2a_HOX2a
------>
DOF2
<----------
DOF2
--------->
YAB1
--------->
MYB52(1)
<-----------
RAV1(1)
==========
HOX2a_HOX2a
---------->
DOF2
--------->
GLK1(2)
<---------
At4g35610
------>
ZmHOX2a(1)
<
aaagagatcacagttctttgtgatgcaaaagttgccctcataatctttgcaagtaatggtaagatgattgattactgttgtccttccatggatcttggtg
6829400
<
<
-
--------->
ANAC58
-
<---------
HSFB2a(2)
<-----------
GT1
---------->
DOF2
--
--------->
HSFB2a(2)
----------->
GT1
<---------
AHL20(2)
---------
-----------
RAV1(1)
--------->
ANAC58
--------->
YAB1
<----------
DOF2
<----------
DOF2
ctatgttggaccaataccagaagttatctggcaagaaactatgggatgctaagcatgag
gtaattttgctctctttttaatctaaagtttctttgtctca
6829500
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AGI:
At5g20240.1
Description:
PI (PISTILLATA); DNA binding / transcription factor. Identical to Floral homeotic protein PISTILLATA (PI) [Arabidopsis Thaliana] (GB:P48007;GB:Q9SQ07;GB:Q9SQ08;GB:Q9SQ09;GB:Q9SQ10;GB:Q9SQ11;GB:Q9SQ12;GB:Q9SQ13); similar to TT16 (TRANSPARENT TESTA16), transcription factor [Arabidopsis thaliana] (TAIR:AT5G23260.1); similar to pistillata [Arabidopsis lyrata] (GB:AAF25591.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)
Range:
from: 6829044
to: 6831517
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.