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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<--------
--------->
TOE1(3)
<--------
--------->
ANAC58
--------->
TOE1(2)
<---------
DEAR3(1)
--------->
ANAC58
--------->
TOE2(3)
<------
ZmHOX2a(1)
<------
NtERF2
------
MYB52(1)
--------->
ANAC46
<---------
At4g35610
---------->
DOF2
------>
NtERF2
---
GAMYB
<---------
ANAC58
--------->
At4g35610
--------->
At4g35610
--------->
DEAR3(1)
-
ALFIN1
<---------
ANAC58
<------
ZmHOX2a(1)
<---------
At4g35610
<---------
LBD16
ttgccaagagagagaagcgtgactccagccattgtaggagacagcttcaaaaccttagataagctgtctaaagaaggacagaagtaactcgcggccgtgt
5904000
<------
NtERF2
----------->
GT1
--------->
GLK1(2)
<---------
ANAC46
<---------
ARR14(3)
<-----------
RAV1(2)
--------->
ARR11(3)
--------->
ANAC46
-------->
P
<-------
TEIL
--------->
LBD16
--------->
MYB46(3)
--------->
LBD16
<---------
ARR14(2)
-
ANAC58
--------->
ANAC46
--------->
ARR14(2)
<---------
ARR11(3)
-
ANAC58
--------->
MYB46(3)
<---------
ARR14(2)
--------->
ARR14(3)
ctccgagcaagtagaacagaacaaacaaccaggcggataaaactagatggcccaaaacaggggattgtccgaagatgcagaagaaaatcttgagatagtc
5904100
<----------
<-----------
RAV1(2)
--------->
LBD16
--------->
At4g35610
<---------
WOX13(1)
<---------
At4g35610
-
--------->
ATHB12
----------->
RAV1(2)
-
----------->
RAV1(1)
<---------
ANAC58
--------->
ZAT2
<---------
ALFIN1
<---------
ANAC46
<---------
At4g35610
<---------
PCF2
<---------
ARR11(3)
<------
NtERF2
<---------
At4g35610
<---------
TCP23
--------->
ARR11(3)
<---------
DEAR3(1)
--------->
At4g35610
----------->
TCP11(1)
------>
ZmHOX2a(2)
<-----------
HVH21
------>
ZmHOX2a(1)
-
<---------
PCF5
--------->
AGP1
<---------
MYB46(3)
<---------
ARR14(2)
<-
<-----------
TCP11(1)
<------
ZmHOX2a(2)
--------->
ALFIN1
<---------
ANAC58
<---------
ZAT2
<-----------
GT1
<---------
YAB1
<---------
AtMYB61
--------->
ARR14(2)
<----
tatgtaaccttgtgggccacattttgattgagatcttatgtaagaacacttggaacggtggtcgtcaaggctggcgagtcctccgctgcagctgtcactg
5904200
<------
NtERF2
--------->
LBD16
------>
NtERF2
--------->
RRTF1(2)
--------->
ATERF1(2)
--------->
DREB2C(2)
--------->
RAP2.6(2)
<---------
ATERF1(2)
--------->
DEAR3(1)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
LBD16
--------->
ERF1
<---------
HSFB2a(2)
--------->
RAP2.3(1)
=================
HOX2a_HOX2a
<---------
LBD16
====================
HOX2a_HOX2a
--------->
ATERF1(1)
<---------
LBD16
------>
NtERF2
------>
ZmHOX2a(2)
<---------
ATERF1(1)
<------
ZmHOX2a(2)
--------->
ABI4(1)
==================
HOX2a_HOX2a
--------->
DEAR3(1)
=====================
HOX2a_HOX2a
-
HVH21
---------->
DOF2
--------->
ARR14(2)
-------->
ATERF1(1)
<---------
ARR14(2)
-------->
DEAR3(2)
------->
TEIL
-------->
MYB46(3)
<---------
AtLEC2
<------
ZmHOX2a(1)
--------->
ARR11(3)
--------
At5g28300
<---------
TOE1(3)
<------
ZmHOX2a(1)
---------->
DOF2
-------
HVH21
<---------
TOE2(3)
--------->
ALFIN1
---------->
DOF2
<---------
ARR11(3)
tcaccgccggcaaaggaatttaaggtttggatggatccggagggaggaggagtttgtgaagcgaaatggagaaagatgagaaagatgaagaagatgttga
5904300
<------
ZmHOX2a(1)
--------->
ALFIN1
--------->
ANAC58
<---------
ANAC46
--------->
ANAC58
<---------
ICU4
<----
<---------
ANAC58
--------->
ANAC58
*
TSS
<---------
ANAC46
<---------
TGA1a
--------->
ANAC58
--------->
YAB1
<----
<---------
ANAC55(2)
--------->
ANAC46
<---------
ATHB12
--------->
O2
--------->
AtLEC2
<---------
ATHB51
--------->
ANAC55(2)
--------------->
AGL15
--------->
ICU4
------
<---------
ANAC58
<---------------
AGL15
--------->
YAB1
<-------
---------->
DOF2
<---------
O2
<---------
ANAC58
--------->
ALFIN1
--------->
ALFIN1
==============================
bZIP_DOF
----------------->
AGL1
<---------
ANAC46
<---------
ANAC46
<------
ZmHOX2a(1)
--------->
TGA1a
<---------
ANAC58
<---------
bZIP60(2)
--------->
ALFIN1
tgaggagagaaagagattgagagccgagacgtgaggagaagagacttgccat
tcaaggaagcaaatgggtatgaagtggaac
aataatgaggtgtgttag
5904400
<------------
CBF
--------->
YAB1
--------->
YAB1
-------->
HAHB4
--------->
YAB1
--------->
AHL20(2)
<----------
DOF2
--
MYB46(1)
<---------
ICU4
<------------
CBF
<---------
GLK1(2)
--
MYB83
<---------
YAB1
<---------
ANAC58
---------->
DOF2
--->
MYB59
<---------
AHL20(2)
<---------
ANAC46
<---------
LBD16
--------->
GLK1(2)
--
MYB52(1)
--------->
ICU4
<---------
ANAC58
----------->
GT1
--------->
AHL20(2)
<-
gttttctgatataataatgagaaaattgtagtttttttttttttgtgtggaagttttgaattgttaatatttcggaaaataaaagattcctttttatttc
5904500
<------
MYB83
----------->
GT1
<------
MYB46(1)
<------
MYB46(1)
<------
MYB83
<---------
AtMYB61
--------->
ANAC58
<--------
P
<---------
ARR11(3)
--------->
ANAC58
--------->
ALFIN1
--------->
AHL20(1)
--------->
ANAC46
<---------
ANAC46
<---------
AHL20(2)
-------->
ATHB1
--------->
ALFIN1
--------->
ARR11(3)
--------->
ATHB51
--------->
ALFIN1
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ARR14(2)
<---------
AHL20(1)
<---------
ATHB12
<---------
ARR14(2)
--------->
ANAC46
<---------
ANAC46
<---------
ATHB51
--------->
LBD16
<---------------------
WRI1
--------->
ICU4
<------
ZmHOX2a(1)
--------
LBD16
<----------
DOF2
--------->
ALFIN1
<---------
AHL20(2)
----------->
GT1
atgcggatgtgggtaggggaaagtattgtctttttatgcgaaatatattaagtgggggaggttatattcaattattcacacaaggaggaaaaatcgaagt
5904600
--------->
ATHB51
-------->
ATHB1
--------->
ATHB12
<---------
YAB1
<---------------
AGL15
--------------->
AGL15
<-----------------
AGL2
<---------------
AGL15
================================================
MADS_MADS
<---------
ARR11(3)
<---------
ARR11(3)
--------->
ARR11(3)
--------->
ARR11(3)
<---------
CCA1(2)
--------->
ARR14(2)
---------->
DOF2
<-----------------
AGL3
<-------
TEIL
--------->
DAG2
--------->
ARR11(3)
--------->
ANAC55(2)
<---------
ZAT6
---------->
DOF2
<---------
ARR11(3)
<-----------
GT1
--------------->
AGL15
<---------
AHL20(2)
tgataaagtgtttttaaagaactctatatctactattattggttttacgagatattcatgttactacaatttgtatgtagtgtttttatttttctatggt
5904700
<---------
YAB1
<-------
MYC3
------->
MYC3
-------->
ABF1
<-------
MYC2
------->
MYC2
------->
MYC4
<-------
MYC4
<---------
ANAC55(2)
--------->
ANAC46
--------->
ANAC55(2)
<---------
TGA1a
--------->
TGA1a
--------->
O2
--------->
ANAC58
--------->
ARR11(3)
<--------
--------->
ANAC58
<---------
ARR11(3)
<---------
TOE2(3)
<-----------
HVH21
<---------
O2
<---------
TOE1(3)
<---------
ZAT6
--------->
AtLEC2
<---------
YAB1
--------->
YAB1
<------
ZmHOX2a(1)
ccaacttggagtccaattttctagtgtaatcgtcgcgaggcatgcaaatcacacgtgtcatgatatttgtgacaataacaaggagttgaggattaatgta
5904800
<---------
YAB1
<---------
YAB1
----------->
GT1
--------->
YAB1
<---------
YAB1
---------->
DOF2
<---------
YAB1
---------->
DOF2
--------->
YAB1
--------------->
AGL15
<---------
At4g35610
<---------
YAB1
<-----------
RAV1(1)
--------->
At4g35610
--------->
YAB1
<---------
ICU4
----------->
GT1
--------->
DAG2
----------->
GT1
--------->
TOE2(3)
-
TOE2(3)
<---------------
AGL15
---------->
DOF2
--------->
DAG2
--------->
TOE1(3)
<------
gttcataatgttgctattatagttaatattcgatgaaaagtagtcagcataaagtattaatagaaaaaaaccataactatcaaagtgagtgagattgtgt
5904900
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AGI:
At5g17860.1
Description:
CAX7 (CALCIUM EXCHANGER 7); calcium:sodium antiporter/ cation:cation antiporter. similar to cation exchanger, putative (CAX8) [Arabidopsis thaliana] (TAIR:AT5G17850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67491.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837)
Range:
from: 5902396
to: 5904382
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.