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Chromosome 1
Chromosome 2
Chromosome 3
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
<---------
ARR14(2)
--------->
ANAC58
--------->
ARR14(2)
<
----------->
GT1
--------->
YAB1
-----
----------->
GT1
------>
ZmHOX2a(1)
<-------
TEIL
--------
----------->
GT1
<---------
ARR14(2)
--------->
ZAT2
<-------
---------->
DOF2
--------->
AHL20(2)
<---------
ZAT2
XXXXXXXXXXXXXXXXXXXX
-
ATHB12
<----------
ID1
--------->
ARR14(2)
--------->
ANAC46
<-----------
GT1
<---------
GLK1(2)
aacatgaaaagagaaaaaacaagtaaatcctctaatcgtattggctaaatactcaactgggttcaactattttccactcgaaaacaaattagattatgta
5662500
<---------
At4g35610
--------->
At4g35610
<-----------
RAV1(2)
------->
MYC3
<-------
MYC3
<---------
ZAT6
<------
MYB83
<---------
O2
--------->
MYB52(1)
---------
MYB52(1)
<---------
ANAC55(2)
<---------
ALFIN1
------>
MYB46(1)
-->
TEIL
--------->
TOE2(3)
--------->
ZAT14
------>
MYB83
->
ANAC55(2)
<------
MYB46(1)
<---------
ZAT18
--------->
TOE1(3)
<----
--
ANAC55(2)
--------->
MYB59
--------->
YAB1
--------->
O2
------->
TEIL
--------->
TOE1(2)
>
MIR860
--------->
REM1(1)
---------->
DOF2
<---------
ZAT14
<---------
REM1(1)
--------->
ATHB12
tcgttgtgttacatcaacattaggtataagagcccaaaagtatcaaaacagtgaaccacatggcagatgaagcttaaccaaacgagcgaaaatgagtgat
5662600
<---------
DAG2
<----------
DOF2
-
------>
MYB46(1)
----------->
RAV1(1)
<------
ZmHOX2a(1)
----
-------->
P
<----------
ID1
<------
ZmHOX2a(1)
<----
------>
MYB83
--------->
TOE1(2)
<------
ZmHOX2a(1)
-----
---------->
DOF2
<---------
GLK1(2)
<------
ZmHOX2a(1)
------
-----
WOX13(1)
<----------
DOF2
--------->
ARR11(3)
>>>>>>>>>
TBF1
--------->
ALFIN1
--------->
ZAT6
ggacacaaaagcctac
ctttctctctgtaagaacaatagatactgcgacaaaactttgaagaagaaggagaaggaggaggagattgtcaaacactaaatt
5662700
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(3)
---------->
DOF2
<---------
ARR14(3)
--------->
ZAT14
-------->
YAB1
---------->
ID1
<---------
GLK1(2)
<---------
ZAT14
----->
WOX13(1)
<---------
WRKY18(1)
--------->
ARR14(2)
--------->
ZAT18
-----
AHL20(2)
----------->
HVH21
--------->
ARR11(3)
<---------------
AtSPL8
---->
AHL20(2)
--------->
DAG2
----------->
ARR10
<---------
AHL20(1)
--->
AHL20(2)
---------->
DOF2
<---------
TOE2(3)
----------->
GT1
----------->
GT1
----------
aatcaaaaggaagagcaaaaggtttgacccattaatgtgagaagatcctcaagaagttatattgcaacgcttactgtaatatatgtacacagacaacaca
5662800
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
------>
MYB46(1)
------>
MYB83
<---------
ALFIN1
-
--------->
MYB46(3)
<
<---------
GLK1(2)
-
--------->
AHL20(2)
<-
<---------
AHL20(2)
<-----------
GT1
<----------
DOF2
-----
----------->
GT1
<---------
MYB55(2)
*
TSS
<----------
DOF2
--------->
YAB1
--------->
ANAC58
---------->
ID1
<---------
ANAC58
-
->
RAV1(1)
------>
ZmHOX2a(1)
--------->
ANAC58
<----------
DOF2
<---------
ANAC58
<
agtagatgatgctgtctcttcctctatcgtaaaaaattctcacccactcaaattttcttccttcttt
gtcttttttttttttttttgctgggttttaatg
5662900
-------->
ARR11(3)
<---------
AHL20(2)
-----------
ARR10
<---------
YAB1
-------->
GLK1(2)
<---------
AHL20(2)
--------
GLK1(2)
<---------
YAB1
---->
YAB1
----------->
TBP
<---------
MYB52(1)
<---------
ANAC46
-------->
ARR14(2)
----------->
GT1
--------->
AHL20(2)
<---------
ANAC58
---------
ARR14(2)
---------->
DOF2
<---------
AHL20(2)
<---------
AHL20(2)
<---------
ANAC58
-----
agaatcttgccagtataaatacaaaagtcgttatttttattttttgggtctatatagttttttaatttagtttttgactggcgagatgcgactctcgagt
5663000
<---------
MYB52(2)
<---------
ANAC46
----------->
GT1
<---------
CCA1(2)
<---------------
AGL15
--------->
O2
--------------->
AGL15
<---------
O2
<-----------------
AGL1
<---------
TGA1a
----------------->
AGL3
<---------
MYB59
--------->
TGA1a
--------->
TOE1(3)
<---------
TOE2(3)
--------->
ANAC55(2)
<-----
=============================================
bZIP_DOF
<---------
AHL20(2)
<-----------
GT1
<-----
------>
HVH21
--------->
TOE2(3)
---------->
DOF2
--------->
YAB1
<---------
ANAC55(2)
<----------
DOF2
gactcgtgtcttaaatcaaaccttaatagttttcaaataaaggtaactatcccaatattaaaacccattacctatttaacatgttttctcttctttttct
5663100
--------->
ANAC55(2)
<---------
ANAC55(2)
<------
MYB46(1)
--------->
At4g35610
----------->
GT1
<---------
AHL20(2)
<---------
At4g35610
<------
MYB83
--------->
AHL20(2)
<
<---------
AHL20(2)
--------->
YAB1
<-----------
GT1
--------->
YAB1
<-------
----
ANAC58
--------->
AHL20(2)
--------->
WOX13(1)
<---------
AHL20(2)
<-----------------
AGL1
----
ANAC58
<---------
YAB1
------>
ZmHOX2a(1)
--------->
MYB59
<---------
WOX13(1)
----------
tggccaaatttatgtcttattatttagctaaattgattcctgatcaattagaaagtttggttaattacatgtttgatttattcatcaattgggcaacagg
5663200
--
-----
--------
<---------
AHL20(2)
--------
--------->
AHL20(2)
--------
<---------
AHL20(2)
----------
--------->
YAB1
--------->
AHL20(2)
----------->
GT1
<----------
DOF2
<---------
AHL20(2)
---------
YAB1
<-----------
GT1
--------->
AHL20(1)
----
RAV1(2)
<---------
AHL20(2)
<---------
AHL20(1)
->
RAV1(1)
--------->
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
<---------
MYB52(1)
<---------
AHL20(2)
ttgtaattgtaaattaatagctctaaattgatatttgtattacaatatttcttatataaatgtaatttaagcctttatttgatatatattatttaaagca
5663300
--------->
YAB1
<---------
YAB1
===========================================================================
MADS_MADS
------->
TOE2(3)
--------------->
AGL15
------>
RAV1(1)
<---------------
AGL15
->
ANAC58
----------------->
AGL2
<---------
AHL20(2)
<---------------
AGL15
->
ANAC46
<-----------
GT1
--------->
AHL20(2)
<-----------
GT1
->
ANAC58
<---------
bZIP60(1)
--------->
DAG2
<----------
DOF2
>
DOF2
--------->
bZIP60(1)
---------->
DOF2
<-----------
GT1
acattagaaaatgatgtgattttagcctattatagtattcaaaaatacagaaagtgtatttatttctaatttacattcttttttctaaactttgtaagtt
5663400
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AGI:
At5g17230.1
Description:
PSY (PHYTOENE SYNTHASE); geranylgeranyl-diphosphate geranylgeranyltransferase. Identical to Phytoene synthase, chloroplast precursor (PSY1) [Arabidopsis Thaliana] (GB:P37271;GB:O22375;GB:Q8LE86); similar to phytoene synthase protein [Carica papaya] (GB:ABG72805.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Terpenoid synthase (InterPro:IPR008949)
Range:
from: 5659576
to: 5662867
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.