Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->ANAC58  <---------ARR14(2)                  --------->ANAC58  --------->ARR14(2)                                              <                  ----------->GT1--------->YAB1                                                 -----        ----------->GT1    ------>ZmHOX2a(1)               <-------TEIL                      --------      ----------->GT1  <---------ARR14(2)           --------->ZAT2                           <-------    ---------->DOF2 --------->AHL20(2)              <---------ZAT2               XXXXXXXXXXXXXXXXXXXX -ATHB12<----------ID1 --------->ARR14(2)       --------->ANAC46    <-----------GT1      <---------GLK1(2)   aacatgaaaagagaaaaaacaagtaaatcctctaatcgtattggctaaatactcaactgggttcaactattttccactcgaaaacaaattagattatgta  5662500                                                              <---------At4g35610                                                              --------->At4g35610                                                            <-----------RAV1(2)                                                        ------->MYC3                                                        <-------MYC3   <---------ZAT6  <------MYB83                        <---------O2          --------->MYB52(1) ---------MYB52(1) <---------ANAC55(2)               <---------ALFIN1        ------>MYB46(1) -->TEIL --------->TOE2(3)                       --------->ZAT14             ------>MYB83 ->ANAC55(2)       <------MYB46(1)               <---------ZAT18     --------->TOE1(3)          <---- --ANAC55(2)      --------->MYB59       --------->YAB1 --------->O2------->TEIL --------->TOE1(2) >MIR860--------->REM1(1)        ---------->DOF2 <---------ZAT14<---------REM1(1)         --------->ATHB12   tcgttgtgttacatcaacattaggtataagagcccaaaagtatcaaaacagtgaaccacatggcagatgaagcttaaccaaacgagcgaaaatgagtgat  5662600             <---------DAG2                        <----------DOF2                                  -           ------>MYB46(1)                 ----------->RAV1(1)              <------ZmHOX2a(1)    ----           -------->P                     <----------ID1                 <------ZmHOX2a(1)      <----           ------>MYB83                --------->TOE1(2)              <------ZmHOX2a(1)         -----    ---------->DOF2                 <---------GLK1(2)           <------ZmHOX2a(1)              ------ -----WOX13(1)<----------DOF2       --------->ARR11(3)    >>>>>>>>>TBF1--------->ALFIN1 --------->ZAT6   ggacacaaaagcctacctttctctctgtaagaacaatagatactgcgacaaaactttgaagaagaaggagaaggaggaggagattgtcaaacactaaatt  5662700                                             ------>ZmHOX2a(1)                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         <---------ARR11(3)                                         <---------ARR14(2)                                         --------->ARR14(3)  ---------->DOF2                        <---------ARR14(3)                        --------->ZAT14 -------->YAB1         ---------->ID1    <---------GLK1(2)                         <---------ZAT14 ----->WOX13(1)       <---------WRKY18(1)--------->ARR14(2)                        --------->ZAT18 -----AHL20(2)       ----------->HVH21   --------->ARR11(3)                    <---------------AtSPL8 ---->AHL20(2)  --------->DAG2         ----------->ARR10                     <---------AHL20(1) --->AHL20(2) ---------->DOF2  <---------TOE2(3)   ----------->GT1     ----------->GT1     ----------   aatcaaaaggaagagcaaaaggtttgacccattaatgtgagaagatcctcaagaagttatattgcaacgcttactgtaatatatgtacacagacaacaca  5662800                                           --------->ANAC58                                           --------->ANAC46                                           --------->ANAC58                                          ------>MYB46(1)                                          ------>MYB83                                         <---------ALFIN1                                           -                                        --------->MYB46(3)                                          <                                <---------GLK1(2)                                                   -                              --------->AHL20(2)                                                   <-                              <---------AHL20(2)   <-----------GT1 <----------DOF2              -----                        ----------->GT1 <---------MYB55(2)         *TSS                   <----------DOF2                        --------->YAB1 --------->ANAC58          ---------->ID1     <---------ANAC58- ->RAV1(1)         ------>ZmHOX2a(1)   --------->ANAC58      <----------DOF2        <---------ANAC58<   agtagatgatgctgtctcttcctctatcgtaaaaaattctcacccactcaaattttcttccttctttgtcttttttttttttttttgctgggttttaatg  5662900 -------->ARR11(3)                <---------AHL20(2) -----------ARR10                <---------YAB1 -------->GLK1(2)               <---------AHL20(2) --------GLK1(2)              <---------YAB1 ---->YAB1  ----------->TBP<---------MYB52(1)                                 <---------ANAC46 -------->ARR14(2)       ----------->GT1                   --------->AHL20(2) <---------ANAC58 ---------ARR14(2)  ---------->DOF2   <---------AHL20(2)   <---------AHL20(2) <---------ANAC58  -----   agaatcttgccagtataaatacaaaagtcgttatttttattttttgggtctatatagttttttaatttagtttttgactggcgagatgcgactctcgagt  5663000                                           <---------MYB52(2)      <---------ANAC46                ----------->GT1   <---------CCA1(2)           <---------------AGL15 --------->O2                  --------------->AGL15 <---------O2                 <-----------------AGL1 <---------TGA1a             ----------------->AGL3                 <---------MYB59 --------->TGA1a  --------->TOE1(3)  <---------TOE2(3)             --------->ANAC55(2)         <----- =============================================bZIP_DOF  <---------AHL20(2)<-----------GT1      <----- ------>HVH21     --------->TOE2(3)---------->DOF2   --------->YAB1<---------ANAC55(2)    <----------DOF2   gactcgtgtcttaaatcaaaccttaatagttttcaaataaaggtaactatcccaatattaaaacccattacctatttaacatgttttctcttctttttct  5663100                                                                --------->ANAC55(2)                                                                <---------ANAC55(2)                                                       <------MYB46(1)                       --------->At4g35610             ----------->GT1     <---------AHL20(2)                       <---------At4g35610             <------MYB83       --------->AHL20(2)        <      <---------AHL20(2)                     --------->YAB1   <-----------GT1  --------->YAB1<------- ----ANAC58      --------->AHL20(2)       --------->WOX13(1)  <---------AHL20(2)<-----------------AGL1 ----ANAC58     <---------YAB1       ------>ZmHOX2a(1)--------->MYB59    <---------WOX13(1)----------   tggccaaatttatgtcttattatttagctaaattgattcctgatcaattagaaagtttggttaattacatgtttgatttattcatcaattgggcaacagg  5663200                                                                                                   --                                                                                                -----                                                                                             --------           <---------AHL20(2)                                                                --------           --------->AHL20(2)                                                                --------          <---------AHL20(2)                                                               ----------    --------->YAB1                                                                    --------->AHL20(2)    ----------->GT1                                                   <----------DOF2<---------AHL20(2) ---------YAB1                                                   <-----------GT1  --------->AHL20(1) ----RAV1(2)                                         <---------AHL20(2)           <---------AHL20(1) ->RAV1(1)--------->AHL20(2)         <-----------GT1 --------->AHL20(2)<---------MYB52(1) <---------AHL20(2)   ttgtaattgtaaattaatagctctaaattgatatttgtattacaatatttcttatataaatgtaatttaagcctttatttgatatatattatttaaagca  5663300                           --------->YAB1                          <---------YAB1                       ===========================================================================MADS_MADS ------->TOE2(3)       --------------->AGL15 ------>RAV1(1)        <---------------AGL15 ->ANAC58             ----------------->AGL2             <---------AHL20(2)       <---------------AGL15 ->ANAC46          <-----------GT1                       --------->AHL20(2)    <-----------GT1 ->ANAC58  <---------bZIP60(1)                  --------->DAG2             <----------DOF2 >DOF2     --------->bZIP60(1)                 ---------->DOF2      <-----------GT1   acattagaaaatgatgtgattttagcctattatagtattcaaaaatacagaaagtgtatttatttctaatttacattcttttttctaaactttgtaagtt  5663400  Previous    Next  AGI:  At5g17230.1    Description:  PSY (PHYTOENE SYNTHASE); geranylgeranyl-diphosphate geranylgeranyltransferase. Identical to Phytoene synthase, chloroplast precursor (PSY1) [Arabidopsis Thaliana] (GB:P37271;GB:O22375;GB:Q8LE86); similar to phytoene synthase protein [Carica papaya] (GB:ABG72805.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Terpenoid synthase (InterPro:IPR008949) Range:  from: 5659576    to: 5662867    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.