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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC46
--------->
HSFB2a(2)
--------->
YAB1
<---------
YAB1
<-----------
GT1
---
<---------
AHL20(2)
----
<---------
ARR14(2)
--------->
ARR14(2)
<---
----------->
GT1
--------->
ARR14(2)
--------->
LBD16
----
<----------
ID1
------->
TEIL
<---------
GLK1(1)
<---------
HSFB2a(2)
<---------
YAB1
--------->
DOF2
<---------
YAB1
<---------
HSFB2a(2)
<---------
LBD16
--------->
GLK1(1)
------
AHL20(2)
--------->
YAB1
--------->
HSFB2a(2)
<---------
YAB1
--------->
ZAT14
<-------
----->
AHL20(2)
<---------
ATHB12
<---------
LBD16
<-----------
GT1
<---------
ARR14(2)
----
taaaaagaaaaaaccccaaatcacgattgtacccataaatctggaaatcggattttatcattcttctccggaaaaacagtattctctgaattctaattga
5362700
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(2)
--->
NtERF2
----->
ANAC46
-------
ID1
----->
ANAC58
----------->
GT1
--
WOX13(1)
--------->
YAB1
<--------
----->
ANAC58
--------->
GLK1(2)
----------->
GT1
----------->
ARR10
----------->
GT1
------
cgccaaatatatatacagagagaatcaaatcgtaaaatgcagataaaaactaatcgacgaagattagccaaacaaaacttgagtaaattgaaattatcca
5362800
--------->
YAB1
--------->
TOE2(3)
<---------
ANAC58
<---------
CCA1(2)
--------->
TOE1(2)
<---------
ANAC58
======================
HOX2a_HOX2a
<---------
ZAT2
------>
ZmHOX2a(2)
<---------
ANAC46
--------->
HSFC1(2)
--------->
DAG2
<---------
ARR11(3)
------->
TEIL
<---------
HSFC1(2)
---------->
DOF2
--------->
ARR11(3)
<---------
CCA1(2)
--------->
ZAT2
---
GT1
----------->
GT1
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
--------->
DAG2
------
--------->
AGL15
=================
HOX2a_HOX2a
<---------
ANAC46
---------->
DOF2
<-----
tatttcgaaaagctaaaaactacattgcaggataaatgatcttatcttaatcgaggaaggaatcgtgtac
cttggagagaaagcgaagcttgggcttagc
5362900
----------->
RAV1(2)
<---------
At4g35610
--------->
ZAT2
--------->
At4g35610
<-----------
RAV1(2)
<---------
At4g35610
--------->
At4g35610
================
RAV
----------->
RAV1(1)
--------->
ZAT2
--------->
At4g35610
<---------
At4g35610
<---------
GLK1(2)
=================
RAV
--------->
ANAC58
===================
RAV
--------->
ANAC58
--------->
ANAC58
---------->
DOF2
--------->
ANAC58
--------->
ANAC58
<---------
WOX13(1)
----------->
RAV1(1)
--------->
ANAC58
<---------
ANAC58
--------->
At4g35610
--------->
CCA1(2)
--------->
ALFIN1
--------->
ANAC46
--->
At4g35610
<---------
ARR14(2)
<---------
ANAC58
<---------
At4g35610
------
----
At4g35610
--------->
ARR14(2)
<------
ZmHOX2a(1)
<---------
LBD16
<---------
ZAT2
agagagacggaaagaaactctgcgagagcggttttggattgggaagtgcgaggaggtttgagtgactgcatagacggaagcagcagcagctggagatgtg
5363000
<---------
TOE1(3)
<---------
TOE2(3)
------>
NtERF2
<---------
YAB1
<------
ZmHOX2a(2)
--------->
ANAC58
--------->
ARR14(2)
--------->
MYB46(3)
--------->
RAP2.6(2)
--------->
ATHB12
--------->
MYB59
--------->
ZAT18
<---
--------->
ANAC58
<---------
YAB1
------>
ZmHOX2a(2)
---------->
DOF2
<---
<----------
ID1
---------->
ID1
<---------
MYB46(3)
<---------
GLK1(2)
---------->
DOF2
----
----->
HVH21
--------->
ANAC46
<---------
YAB1
<---------
ARR14(2)
<---------------------
WRI1
----------
actgagaacgacgaagacgccat
tcgtcttcttattgttattggttcagatcgggtttaggttctctctcgatgaaaccaaagagcacaacaacaacagt
5363100
<-----------
HVH21
------->
MYC2
------->
MYC3
<-------
MYC3
<-------
MYC2
<-------
MYC4
------->
MYC4
<-------
PIF5
------->
PIF5
<--------
ABF1
--------->
TGA1a
<---------
O2
--------->
bZIP60(2)
<---------
TGA1a
--------->
O2
<<<<<<<<<<
ABI5
<---------
ANAC55(2)
--------->
ANAC55(2)
*
TSS
<<<<<<<<<<
HY5
<---------
ARR14(2)
<-----------
GT1
------>
NtERF2
---------->
DOF2
<---------
GLK1(2)
<---------
YAB1
<---------
ALFIN1
--------->
ZAT14
--------->
ARR14(2)
--------->
YAB1
<-----------------
PIF3(1)
------
ZAT18
--------->
ETT(1)
<---------
YAB1
--------->
GLK1(1)
<------
------
ZAT14
<---------
ANAC46
=========================================
bZIP_DOF
----->
ZAT14
<---------
ARR11(3)
<----------
DOF2
=========================
bZIP_DOF
<----
->
RAV1(1)
--------->
ARR11(3)
<---------
CCA1(2)
<----------
DOF2
<<<<<<<<<<
AtMYC2
------>
ZmHOX2a(2)
tcacttcagaaagagagagagaagatgtc
ggattcggaacgcgtttctctttgattataactctctttcagatttcgccacgtgtcatactctgatctgt
5363200
<----------
DOF2
<-----------
GT1
--------->
ZAT18
<---------
YAB1
<---------
ZAT18
<--------
HAHB4
<---------
ANAC58
-------->
ATHB1
--------->
ARR14(2)
<---------
ICU4
------------>
CBF
--------->
ATHB51
<---------
ARR14(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
ARR14(2)
<---------
ANAC58
--------->
TOE1(3)
--------->
YAB1
--------->
ARR14(2)
<---------
ATHB12
--------->
TOE2(3)
--------->
ICU4
--------->
AHL20(2)
-----
RAV1(1)
--------->
ARR14(2)
<-----------
GT1
--------->
AHL20(2)
<
-----
MYB52(1)
--------->
KAN4(2)
--------->
YAB1
--------->
AHL20(2)
--------->
AHL20(2)
<
tgttctgtattcgcgattactcccaatccttgtggactatcgtattttttaccttgaagaatttaaatgaattattacttttaaataaatataaaaaatg
5363300
------>
ZmHOX2a(1)
==============================================
MADS_MADS
<-----------------
AGL1
----------------->
AGL1
<---------
ARR14(2)
<---------
ARR14(2)
<-----------------
AG
--------->
ARR14(2)
--------->
ARR14(2)
--------->
ARR11(3)
<------
ZmHOX2a(1)
--------->
GLK1(2)
----------->
GT1
<---------
YAB1
<----------
DOF2
--------->
RVE1(1)
<---------
ZAT6
<-----------
GT1
<---------------
AGL15
----------->
GT1
---------
TOE1(3)
<------
ZmHOX2a(1)
--------------->
AGL15
--------->
ANAC58
---------->
DOF2
---------
TOE2(3)
<---------
TOE2(3)
--------->
ZAT14
--------->
ANAC58
------->
TEIL
ttagggttaaaatcctgtttaggaaattacaatttctctaaactctttagaggaaacacattttttcagcaagaaaaaaatccgactgcatctaaagatg
5363400
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
<---------
DEAR3(2)
<---------
AHL20(1)
<---------
At1g77200
<------
ZmHOX2a(2)
--------->
ANAC58
<---------
DREB2C(2)
--------->
AGP1
--------->
ANAC58
<---------
DEAR3(1)
<-------
TEIL
--------->
ANAC46
<---------
DEAR4(1)
--------->
AHL20(2)
--------->
TOE2(3)
--------->
SPL7
--------->
AHL20(2)
<-----------
RAV1(1)
<---------
AHL20(2)
<-------
TEIL
<-------
TEIL
--------->
AHL20(2)
aaaatgctgtcggtgtctccaatttttataaaaaaatacatgaatagatccaaatacattagcctaatatacatacgccaaatgtattaaatttttaaaa
5363500
--------->
GLK1(2)
<-----------
GT1
<---------
ANAC58
<---------
ANAC58
--------->
CCA1(2)
<---------
ARR14(2)
------
--------->
MYB46(3)
<---------
ANAC46
--------
<------
MYB46(1)
--------->
ARR14(2)
--------->
ANAC46
<------
MYB83
<---------
ARR11(3)
--------->
ANAC58
<---------
ARR14(2)
--------->
ARR11(1)
--------->
ZAT2
---------->
DOF2
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ZAT2
<-------
TEIL
--------->
ANAC58
ttaggcgagactggatttggtgaacaactaaatgaagatatgacttgttaacaatctagctggaagttggaacatccattgaaaacaaagcacaagcatc
5363600
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AGI:
At5g16390.1
Description:
BCCP/BCCP-1/BCCP1/CAC1-A/CAC1A (BIOTIN CARBOXYL CARRIER, BIOTIN CARBOXYL CARRIER PROTEIN 1); biotin binding. Identical to Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplast precursor (BCCP1) [Arabidopsis Thaliana] (GB:Q42533;GB:O04845;GB:Q9LL78); similar to BCCP2 (biotin carboxyl carrier protein 2), biotin binding [Arabidopsis thaliana] (TAIR:AT5G15530.1); similar to biotin carboxyl carrier protein [Brassica napus] (GB:CAA62261.1); contains InterPro domain Single hybrid motif (InterPro:IPR011053); contains InterPro domain Acetyl-CoA biotin carboxyl carrier; (InterPro:IPR001249); contains InterPro domain Biotin-binding s
Range:
from: 5360804
to: 5363129
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.