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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--
--------
<---------
ANAC58
<---------
ANAC46
<---------
ANAC55(2)
<---------
ANAC58
<---------
ANAC46
----------------->
AGL3
<-----------
HVH21
<-----------------
AGL2
--------->
ARR11(3)
--------->
GLK1(1)
<---------
O2
<---------
ARR11(3)
----------->
GT1
--------->
CCA1(2)
<---------
ZAT6
--------->
YAB1
<-
--------->
ZAT2
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
<---------
YAB1
-------
<---------
ZAT2
--------->
ANAC58
<---------
HSFB2a(2)
<---------
AtMYB61
<-----------
RAV1(1)
->
ANAC46
--------->
At5g28300
--------->
ANAC58
--------->
HSFB2a(2)
--------->
MYB59
<---------
ICU4
<--
attggagctagggtaaatccaattttggaggtaaggaagagagacgagtccagaaggagagacattagagtgaggtcgtttgatgatcatgtcgcgtgta
4474000
--------->
ANAC58
<---------
ARR11(3)
--------->
ANAC46
<---------
At4g35610
<---------
DOF5.7(2)
--------->
bZIP60(2)
---------->
DOF2
--------->
At4g35610
--------->
ARR14(2)
===============
HOX2a_HOX2a
<---------
ARR14(2)
--------->
CCA1(2)
<---------
ANAC46
<---------
ANAC55(2)
--------->
ARR14(1)
------>
NtERF2
--------->
ANAC55(1)
--------->
ARR11(1)
--------->
ANAC58
--------->
ANAC58
<---------
ARR14(2)
--------->
ANAC58
--------->
ANAC46
<---------
GLK1(2)
<---------
ANAC46
<---------
TGA2(2)
--------->
ANAC55(2)
--------->
ARR14(2)
--------->
ANAC46
<---------
ATERF1(1)
--------->
ANAC58
<---------
ARR14(2)
<------
ZmHOX2a(1)
----------->
TGA1
------->
ARR14(2)
--------->
ARR14(2)
<---------
HSFB2a(2)
----------->
HVH21
->
ALFIN1
--------->
ANAC58
----------->
ARR10
<------
ZmHOX2a(2)
<---------
At4g35610
--
--------
ARR14(2)
--------->
ARR11(3)
--------->
HSFB2a(2)
<---------
REM1(1)
---------->
DOF2
<--
-->
REM1(2)
<------
ZmHOX2a(1)
<-------
TEIL
--------->
ARR11(3)
--------->
ZAT2
<---------
LBD16
----
ZmHOX2a(1)
=====================================
HOX2a_HOX2a
--------->
At4g35610
<------
NtERF2
ggattcacgtaaacgcaaggaggatactgagggtaagattcgaggagccagatcacgacggggatgttgtagctgacgccttggaaaggcatcgggattg
4474100
------>
ZmHOX2a(2)
--------->
ANAC46
--------->
ANAC58
====================
HOX2a_HOX2a
<------
ZmHOX2a(1)
===================
HOX2a_HOX2a
<----------
DOF2
<------
ZmHOX2a(2)
<---------
ANAC46
<---------
ARR14(2)
----------------->
AGL1
<------
NtERF2
<---------
ANAC55(2)
<-----------------
AGL2
<------
MYB46(1)
------>
NtERF2
--------->
ANAC55(2)
--------->
DOF5.7(2)
<------
MYB83
<---------
DEAR3(2)
--------->
ARR14(2)
<---------
TOE2(3)
--------->
MYB59
<---------
DEAR3(1)
--------->
ANAC55(1)
<---------
DOF5.7(2)
<------
ZmHOX2a(1)
<---------
MYB52(1)
--------->
ANAC58
<---------
ANAC58
<XXXXXXXXXXXXXXXXXXXXX
MIR831
---
<-----------
HVH21
<---------
LBD16
<---------
ANAC58
--------->
ALFIN1
<---------
TOE2(3)
------->
DEAR3(2)
--------->
MYB52(1)
<---------
ANAC46
<---------
MYB52(1)
--------->
ALFIN1
<-----
-------
At5g28300
--------->
GLK1(2)
<---------
MYB52(1)
<---------
RAP2.6(3)
<---------
REM1(1)
<------
ZmHOX2a(1)
taccgtcggcttggaggagaatcacggatcggccatcgttgtgtgtaaacgttgccgttttggggtcgagggaagtgtaggaagagattaggttgaggag
4474200
------>
ZmHOX2a(2)
==============
<---------
GLK1(1)
<---------
LBD16
--------->
GLK1(1)
<---------
ZAT14
--------->
ARR11(3)
--------->
ZAT18
<---------
AGP1
--------->
ZAT14
<---------
ARR11(3)
--------->
ALFIN1
<---------
ARR14(2)
<---------
ANAC58
--------->
ARR14(2)
<---------
SPL7
<---------
ANAC58
<---------
CCA1(2)
<---------
ANAC58
<---------
ANAC46
<---------
ARR14(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
At4g35610
<---------
MYB46(3)
<---------
AtMYB61
<---------
GLK1(2)
<---------
ANAC46
--------->
MYB55(2)
<------
ZmHOX2a(1)
-------
--------->
WRKY12
<---------
ANAC58
<---------
MYB46(3)
===================
HOX2a_HOX2a
----------->
HVH21
<------
NtERF2
--------->
ANAC58
========================
HOX2a_HOX2a
------>
ALFIN1
<---------
DEAR3(1)
--------->
ANAC58
<------
ZmHOX2a(1)
==============
----
AtMYB61
<---------
HSFB2a(2)
<---------
ALFIN1
--------->
LBD16
<---------
MYB46(3)
gtgttgacggattagcgacttggtgttctcggcgtatggaagagcggaagggccacgctgggtgagtgcggaggagaggaattggtggatctcttgcatc
4474300
--------->
ATERF1(1)
<------
ZmHOX2a(1)
----------->
TGA1
--------->
ALFIN1
<-----------
RAV1(2)
<------
<------
NtERF2
----------->
RAV1(1)
-------
--------->
LBD16
------>
NtERF2
<---------
ICU4
--------->
DEAR3(1)
--------->
ANAC58
--------->
ETT(2)
--------->
YAB1
<---------
LBD16
--------->
ANAC58
<---------
ANAC55(2)
--------->
MYB52(1)
<---------
YAB1
================
HOX2a_HOX2a
<---------
ANAC46
----------->
HVH21
-------->
HAHB4
<--
>
TEIL
<------
ZmHOX2a(1)
<---------
ANAC58
<---------
At4g35610
--------->
ICU4
-------
=============
HOX2a_HOX2a
<---------
ANAC58
--------->
At4g35610
<---------
ATHB51
<--
ttcgccggaggaggagccat
tagcaagtcaaactccgattacttgaagacgacgacagatgacgaataacgaattcttcttaattatgaataggcgaatt
4474400
<---------
LBD16
<-----------
GT1
*
TSS
--------->
LBD16
----------->
GT1
---
ARR14(2)
<---------
TOE2(3)
-->
ARR14(2)
<------
ZmHOX2a(2)
--------->
AHL20(1)
----------
----
MYB83
--------->
ARR14(2)
--------->
YAB1
--------->
AHL20(2)
-->
GLK1(2)
<---------
ARR14(2)
------------>
CBF
--------->
AHL20(2)
--------->
YAB1
----
MYB46(1)
------>
ZmHOX2a(2)
<---------
AHL20(2)
----------->
GT1
---------->
DOF2
tggt
tttataccggatcgaatagtttgggagaaattaatccaatttagtctaaagttttgaaaaaataatgtaaatttcttcaaagtaataaaaaaagtc
4474500
---------->
DOF2
--------->
CCA1(2)
---------->
DOF2
--
--------->
WRKY38(1)
---------->
DOF2
--------->
AtMYB61
--------->
YAB1
<---------
ICU4
<-----
------->
TEIL
--------->
WRKY45
<---------
ATHB12
------
>
DOF2
<---------
ZAT18
--------->
WRKY12
<---------
ARR11(3)
---
tgaacttcaaattccaatattctgcacctaaaccaaaactttgaccccaaagataaaagtcttaatagttgaaacttcaaaatcattctgcaaaaagaat
4474600
---------->
DOF2
--------->
At4g35610
<--------
HAHB4
--------->
DAG2
--------->
YAB1
---------->
DOF2
<---------
YAB1
--------->
GLK1(2)
---->
ZmHOX2a(1)
--------------->
AGL15
----
ARR14(2)
<-----------------
AGL2
<---------
DAG2
--->
GLK1(2)
----------------->
AGL3
<----------
DOF2
<------
------>
TOE2(3)
<---------
YAB1
<---------------
AGL15
<---------
ICU4
<----------
DOF2
cctaaaatcaaaaaagtaatctagttttcattcattcattctattattagctaaagaacaatctgaaaccaattctgactttgttgtatcacttttatgt
4474700
<---------
YAB1
---------->
DOF2
--------->
YAB1
----------->
GT1
----------->
GT1
----------->
GT1
<-------
TEIL
--------->
ATHB12
<---------
At4g35610
---
YAB1
<---------
YAB1
--------->
AtLEC2
<-------
TEIL
<--
ttcaagatgcattgttcaaactctctatgtaaaacattttgattagttataatgcaatgcagatgttaaaaaaagaagttagattcatgttttagtattt
4474800
--------->
YAB1
------->
TEIL
<---------
ARR11(1)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR14(1)
<---------
CCA1(2)
<---------
YAB1
------>
ZmHOX2a(1)
<---------
TOE2(3)
--------->
AtLEC2
<-----------
GT1
<---------
ANAC55(2)
<---------
AHL20(2)
------>
ZmHOX2a(2)
-
---------->
ID1
--------->
ANAC55(2)
--------->
AHL20(2)
<---------
ARR11(3)
<
<----------
DOF2
--------->
TOE1(3)
--------->
ATHB12
--------->
ARR11(3)
<-
---------
GT1
--------->
TOE2(3)
<---------
AHL20(2)
<---------
ARR14(2)
<<<<<<<<<<
tcacacttttgtcttaactattccttaaaacgtatctataatgaattgatttaatgaatagttttagtgtatatgatcttgatcatgctaaattgacaat
4474900
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AGI:
At5g13860.1
Description:
ATELC-LIKE/ELC-LIKE; small conjugating protein ligase. similar to ATELC/ELC, ubiquitin binding [Arabidopsis thaliana] (TAIR:AT3G12400.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96512.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Tumour susceptibility gene 101; (InterPro:IPR008883); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)
Range:
from: 4473091
to: 4474404
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.