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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
---------->
DOF2
<---------
MYB52(1)
----------->
GT1
--------->
LBD16
<---------
AHL20(2)
<---------------
AGL15
<---------
ARR11(3)
--------->
ANAC55(2)
--------->
ARR11(3)
--------------->
AGL15
--------->
AHL20(1)
--------->
ANAC46
<---------
AHL20(1)
----------------->
AGL1
<---------
AHL20(1)
----------------->
AG
--------->
AHL20(2)
========================================================
<---------
At4g35610
<-----------------
AGL1
--------->
AHL20(1)
--------->
ZAT14
<----------
DOF2
<---------
ANAC55(2)
<---------
AHL20(2)
<----
<---------
ZAT14
<---------
DAG2
<-----------------
AGL2
<---------
AHL20(2)
---------
-----
DAG2
--------->
YAB1
<----------
DOF2
--------->
AHL20(1)
<--------
------
DOF2
<---------
YAB1
<---------
YAB1
<---------
AHL20(1)
--------->
ARR11(3)
ttttctgctctggtccatggttttgataatgggccttatgaattctttccgtaatgggttttgactaataaaatattttttggtgaaaagagctagctcc
4380000
<---------
YAB1
<---------
AHL20(2)
=========================================================
<---------------
AGL15
--------------->
AGL15
--------->
ARR11(3)
<---------
At5g28300
<---------
ARR11(3)
<---------
YAB1
<-----------
HVH21
--------->
AHL20(2)
--------->
AHL20(2)
<-----------
GT1
------>
ZmHOX2a(1)
--------->
YAB1
===========================================================
MADS_MADS
--------->
AHL20(2)
-----
ALFIN1
<---------
WRKY18(1)
--------->
REM1(1)
--------->
AHL20(1)
-
>
At4g35610
<---------
MYB111(1)
--------->
CCA1(1)
<---------
ZAT6
--------->
YAB1
-
-
ZAT2
--------->
MYB46(3)
--------->
RVE1(1)
<---------
YAB1
----------->
GT1
-
acatttaagagagcaactactatattgaccagtcaaatatctcctacatttattagtattactgtggaatattgaaaaataatatcaagaatttagtcat
4380100
<---------
CCA1(1)
<---------
RVE1(1)
--------->
ARR14(2)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR11(3)
--------->
DAG2
--------------->
AGL15
<---------
HSFB2a(2)
<---------
MYB59
<---------
At5g28300
--------->
HSFB2a(2)
--
<---------------
AGL15
<-----------
HVH21
----
=================
MADS_MADS
----------->
GT1
<---------
ANAC58
----
---------------->
AGL1
---------->
DOF2
---------->
DOF2
<---------
ANAC58
<----------
ID1
---------------->
AG
<-----------
GT1
---------->
DOF2
<-----------
RAV1(2)
-----------
---------------->
AGL2
--------->
TOE2(3)
---------->
DOF2
<-----------
HVH21
---------->
DOF2
ttaccaaaatgagccagatattttaccgtaaacacaaagttacaaaagaaaagaagaaagagagagagagagtcaggcgttacagaaataaagggaaaaa
4380200
------->
TEIL
<---------
CCA1(2)
--
-------->
DOF2
------>
ZmHOX2a(1)
<-------
TEIL
<---------
ALFIN1
----->
ANAC58
<---------
MYB52(2)
<---------
HSFC1(2)
<---------
ALFIN1
----->
ANAC58
--------->
At4g35610
--------->
HSFC1(2)
----------->
HVH21
>
GT1
<---------
At4g35610
---------->
DOF2
<-----------
HVH21
<--
cgaaagttgcaaaattttagtaacagctaactcctgcaaacaaaacaaaagcttcgtctgtatctatctctcccttcagactcggtctcacccctacttc
4380300
----
--------->
AHL20(2)
<----
--------->
AHL20(2)
<-----
<---------
AHL20(2)
<-----
--------->
AHL20(2)
---------
<---------
AHL20(2)
<--------
--------->
AHL20(1)
<---------
GLK1(2)
------->
GAMYB
<---------
AHL20(1)
<---------
DAG2
--------->
AtMYB61
<---------
AHL20(2)
<----------
DOF2
--------->
MYB46(3)
<---------
AHL20(1)
<---------
ATHB12
--------->
ARR14(2)
------->
ANAC46
--------->
AHL20(2)
-------->
P
-------->
P
<---------
ALFIN1
-------------------
WRI1
--------->
AHL20(1)
<---------
YAB1
----------->
RAV1(1)
tccgatacaaccaaaacccaaaattaatttattcccattatcaacccatatgtttatggggttttgatgatcaaccattttgcaacacttttagatttgc
4380400
<---------
ANAC58
---------->
DOF2
<---------
ANAC46
----->
LBD16
<---------
ANAC58
-----
ANAC46
<---------
STY1(2)
------->
MYC3
----------------
WRI1
<---------
ANAC58
<-------
MYC3
----
LBD16
---------->
DOF2
--------->
GLK1(2)
<---------
ALFIN1
>
CCA1(2)
<----------
ID1
--------->
STY1(2)
<---------
ARR14(2)
<-----------
HVH21
-
GLK1(1)
---------->
DOF2
<---------
ANAC58
--------->
ARR14(2)
<---------
ZAT6
ggaaaaaccaaagagttgaagtgaaagaacaaag
atggctagcttgaaactgggttccaaatctgaagtctttcatcttagtggtcacacatg
gtcagtc
4380500
<<<<<<<<<
TBF1
<---------
At4g35610
<<<<<<<<<
TBF1
--------->
WOX13(1)
<----------
DOF2
<---------
AtLEC2
<<<<<<<<<
TBF1
<---------
ATHB12
<---------
At4g35610
<----------
DOF2
ttcttcttcttcttcaatcgcttaaatcattcactaacaaaacaaaacgtttcatctccttttgtaatctgatcag
gctttgcaagactggtcttaagcc
4380600
<---------
HSFB2a(1)
--------->
HSFB2a(1)
--------->
HSFC1(2)
---------->
DOF2
--------->
ANAC58
--------->
ANAC58
<---------
YAB1
<--
<---------
ANAC46
--------------->
AtSPL8
<--
--------->
ANAC46
--------------->
AtSPL3
<------
------>
ZmHOX2a(2)
<---------
HSFC1(2)
--------->
YAB1
--------
<---------
YAB1
--------->
ANAC46
--------->
DAG2
<----------
DOF2
<---------
TOE1(2)
cgatgttatgatccaagtcgtagacgaaagcttccatctccataag
gtaccaattctaatcgactcaaaactcttttgaatttctaaactcatacgttca
4380700
<---------
GLK1(2)
<---------
ANAC58
<---------
HSFB2a(2)
<-----------
GT1
--------->
HSFB2a(2)
======================
--------
DOF2
--------->
ARR11(3)
----------->
RAV1(2)
-------
DAG2
<---------
ARR11(3)
---------->
DOF2
-
TEIL
<---------
ANAC58
<----------
DOF2
<---------
GLK1(1)
--------->
At4g35610
->
DOF5.7(2)
--------->
TOE2(3)
--------->
GLK1(1)
<---------
At4g35610
<-------
cttttttaacttgtcttgttttcaacatcag
tttcctttgttgtcaagaagtggatatctagaaactctgttcagcaaagcctctgagacaacttgtgtt
4380800
------>
ZmHOX2a(1)
--------->
ALFIN1
---------->
DOF2
<-------
TEIL
<---------
AtMYB61
--------->
At4g35610
<---------
At4g35610
--------->
ABI4(2)
----------->
HVH21
--------->
ZAT2
<---------
MYB52(1)
<-----------
HVH21
--------->
At4g35610
<---------
MYB46(3)
<---------
At4g35610
--------->
bZIP60(1)
<---------
ZAT2
--------->
LBD16
<---------
ANAC58
--------->
ICU4
----------->
RAV1(2)
====
RAV
--------->
LBD16
<---------
ANAC46
<---------
At5g28300
<---------
ALFIN1
----
RAV1(1)
<---------
LBD16
<---------
ANAC58
<-----------
GT1
<---------
TOE2(3)
gctcagcttcatgacattcccggtggtcctgaaacattcttgcttgtagctaagttttgttacggtgtaagaattgaggtcacacctgaaaacgctgtga
4380900
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AGI:
At5g13600.1
Description:
phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT5G03250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68937.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069)
Range:
from: 4380435
to: 4382500
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.