AthaMap

Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved TF binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
--------->At4g35610 <---------ZAT2 --------->ZAT2 <------NtERF2 <-----------RAV1(2) --------->LBD16 <---------At4g35610 ------>NtERF2 <------NtERF2 --------->RRTF1(2) --------->DEAR3(1) ----------->RAV1(1) --------->RAP2.3(1) --------->RRTF1(1) <------NtERF2 --------->ATERF1(1) <---------ATERF1(1) --------->RAP2.6(2) --------->RAP2.3(3) --------->RAP2.3(2) --------->RRTF1(2) --------->ANAC46 --------->ATERF1(2) <---------ALFIN1 <---------DEAR3(1) --------->DEAR3(1) --------->RAP2.6(1) --------->ATERF1(1) --------->ORA47(2) <------NtERF2 --------->RRTF1(1) --------->RAP2.3(1) --------->ERF1 --------->DEAR4(2) --------->ABI4(1) ------>NtERF2 <---------DREB2C(1) <---------ATERF1(1) <---------DEAR4(2) <---------RAP2.3(1) <---------At4g35610 --------->RAP2.3(2) --------->RAP2.3(3) --------->At5g28300 --------->ATERF1(2) --------->LBD16 <---------ATERF1(2) <---------O2 <---------DEAR3(1) --------->O2 --------->DEAR3(1) <---------ANAC46 --------->RRTF1(2) <---------TGA1a --------->RRTF1(3) --------->TGA1a <---------ALFIN1 <------NtERF2 --------->RAP2.6(1) ------>NtERF2 --------->ATERF1(1) --------->LBD16 <------NtERF2 --------->ANAC46 --------->RRTF1(1) <---------LBD16 --------->DEAR4(2) --------->MYB46(3) --------->RAP2.3(1) <---------MYB55(2) --------->ERF1 <----------DOF2 --------->ARR14(2) --------->ORA47(2) <---------ARR14(2) <---------RAP2.3(1) <---------ANAC46 <---------DEAR4(2) <---------DEAR3(1) <---------ATERF1(1) < <---------LBD16 --------->DEAR3(1) <-------TEIL -- <---------At4g35610 ------>NtERF2 --------->ABI4(1) <- --------->At4g35610 <---------ALFIN1 --------->RAP2.3(2) ---- <-----------RAV1(1)<---------MYB52(1) <-----------HVH21 --------->RAP2.6(1) ------ ------->MYC3 ------->TEIL ------>NtERF2 --------->At4g35610 <------ZmHOX2a(2) <-------MYC3 <---------ZAT18 <---------ETT(1)<---------ATERF1(2) <------- <---------ALFIN1 <---------SPL7 ----------->HVH21 ------>NtERF2 <---------ZAT6 -------- ---->HSFB2a(1) --------->ZAT14 --------->ANAC46 --------->RRTF1(3) <---------YAB1 - -----HSFB2a(1) --------->ALFIN1 <------ZmHOX2a(1) --------->SPL7 <---------At4g35610 ------>ZmHOX2a(2)
cttccacgttttgctgcggtgtacccgccgtgagtagaggaatcactccgacaccgagcgccgccgccgcagctgcattactgttcatatgatcggatcc	3989000
--------->DEAR3(1) --------->RAP2.3(1) --------->ATERF1(1) <------NtERF2 ------>NtERF2 --------->LBD16 --------->ABI4(1) <---------ATERF1(1) --------->At4g35610 --------->RAP2.3(3) --------->RRTF1(3) --------->RRTF1(2) --------->RAP2.3(2) --------->DEAR3(1) --------->RAP2.6(2) <---------DEAR3(1) <---------ATERF1(2) --------->ATERF1(2) --------->DEAR4(2) --------->ORA47(2) --------->ERF1 --------->RAP2.3(1) --------->RRTF1(1) <------NtERF2 --------->RAP2.6(1) --------->ATERF1(1) --------->ABI4(1) --------->At4g35610 <---------At4g35610 ------>NtERF2 <---------ATERF1(1) <---------RAP2.3(1) <---------DEAR4(2) <---------DREB2C(1) --------->RAP2.3(2) --------->RAP2.3(3) <---------DEAR3(1) <---------ATERF1(2) --------->DEAR3(1) --------->ATERF1(2) <------NtERF2 --------->RRTF1(1) --------->RAP2.6(1) --------->DEAR4(2) --------->ERF1 --------->ORA47(2) --------->LBD16 --------->RAP2.3(1) ------>NtERF2 <---------RAP2.3(1) <---------LBD16 <---------ATERF1(1) --------->ZAT6 ------>NtERF2 ---------GLK1(1) <------NtERF2 --------->AtLEC2 --------->ANAC46 ------->ARR14(2) --------->LBD16 --------->MYB46(3)--------->ATERF1(1) --------ARR11(3) ----------->GT1 <---------ATHB12 <---------DEAR3(1) ----->LBD16 <---------MYB46(3) --------->ANAC58 ------>MYB83 --------->DEAR3(1) >ZmHOX2a(2) --------->ALFIN1 --------->ANAC58 ------>MYB46(1)<-----------HVH21 <-- --ARR14(2) <-----------RAV1(1) --------->ANAC46 -------->P --------->ANAC46 <-- ->ARR14(2) <----------DOF2 <---------LBD16 --------->MYB46(3)--------->ATERF1(1) ---- -------->GLK1(1) <---------AtMYB61 ----------->RAV1(1) --------->AtMYB61 <---------ATERF1(1) <----
agatatcactccggcgttctggtggtgataagccggagcaacaaggaatacatctcttagaccaaccatgcccatctccgtcgccgccgccgaagaaggt	3989100
--------->ANAC58 --------->ANAC58 <------NtERF2 ------>NtERF2 <---------ATERF1(1) <---------DEAR3(1) ----------->HVH21 --------->ATERF1(1) --------->RAP2.3(1) <------NtERF2 <---------RAP2.6(1) ------>NtERF2 <---------RAP2.3(1) <---------ERF1 <---------DEAR4(2) <---------ATERF1(1) <---------RRTF1(1) <---------ORA47(2) <---------DEAR3(1) --------->ATERF1(2) <---------ATERF1(2) --------->DEAR3(1) --------->RAP2.3(1) <------NtERF2 --------->ATERF1(1) <---------ABI4(1) ------>NtERF2 <---------RAP2.3(1) --------->ATHB12 --------->DEAR3(1) <---------YAB1 <---------RAP2.3(2) --------->ICU4 <---------RAP2.3(3) <---------LBD16 <---------ERF1 ------>ZmHOX2a(2) <---------RAP2.6(1) <------ZmHOX2a(2) <---------ATERF1(1) <---------ARR11(3) <---------DEAR4(2) <---------ARR14(2) --------->LBD16 <---------ARR14(2) --------->ARR14(2) <---------ORA47(2) --------->ARR14(2) --------->ARR11(3) <---------ATERF1(2) <---------ANAC46 --------->MYB52(1) --------->ANAC58 --------->DEAR3(1) --------->MYB52(1) ----------->HVH21 --------->ANAC58 <---------DEAR3(1) --------->LBD16 <---------RAP2.6(3) --------->SPL7 --------->ATERF1(2) --------->AtMYB61 ================= <---------SPL7 <---------ARR14(3) <---------RAP2.3(2) <---------MYB55(2)================= --------->RAP2.6(2) --------->LBD16 <---------LBD16 --------->At4g35610 ----------->TGA1 ----MYB46(1) --------->ARR14(3) --------->ATERF1(1) --------->MYB46(3)<------ZmHOX2a(1) ----MYB83 --------->HSFB2a(1) --------->ANAC58 <---------At4g35610 ----------->HVH21 ----->MYB59 <---------HSFB2a(1) --------->ANAC58 --------->ZAT2 <---------ANAC46 --------->MYB46(3) ----P ------->GAMYB --------->LBD16 --------->SPL7 <---------ZAT2 --------->DEAR3(1)
aggccgtaacggacagaagatcccggaggccatgatggaacgccggcggcgacggaagctgagcctaaaccaccgtggatgacggaggaaccagcattga	3989200
--------->ANAC58 --------->ANAC58 <---------LBD16 <---------ABI4(2) <------NtERF2 --------->ZAT18 <---------SPL7 <---------WRKY38(1) ------>NtERF2 <------NtERF2 --------->ANAC58 <-----------HVH21 ------>NtERF2 --------->ANAC46 <-------GAMYB <---------DEAR3(1) <---------RAP2.6(3) --------->O2 ------>ZmHOX2a(1) --------->RAP2.6(2) <---------TGA1a ------>ZmHOX2a(2) --------->ATERF1(1) --------->ARR14(2) <------ZmHOX2a(2) <---------O2 <---------WRKY12 <---------bZIP60(1) <---------ARR11(3) <------NtERF2 <------MYB83 --------->GLK1(2) <---------GLK1(2) <-----------HVH21 <---------DEAR3(2) --------->bZIP60(1) <---------ARR14(2) <------NtERF2 <---------MYB46(3) <---------O2 --------->ARR14(3) <---------ANAC46 <-----------HVH21 <---------GLK1(2) --------->ARR11(3) --------->bZIP60(1) <---------DEAR3(1) =============MYC_MYB --------->ARR14(2) <---------bZIP60(1) <---------DREB2C(2)----------->HVH21 --------->AGP1 <------NtERF2 --------->DEAR3(1) --------->LBD16 <---------GLK1(1) <------MYB83 <---------RAP2.6(2) <---------LBD16 <---------DEAR3(2) --------->GLK1(1) <---------AtMYB61 --------->RAP2.3(1)------->TEIL --------->TGA1a ----------->ARR10 <--------P <---------DEAR3(1)<------MYB46(1)<---------ARR14(2) ----- =================HOX2a_HOX2a <------MYB46(1)<---------ATERF1(1) --------->MYB52(1) ------>NtERF2 ==================HOX2a_HOX2a --------->ALFIN1 <------NtERF2 --------->ANAC58 <---------DEAR3(1) <
aaccaagagagagatcctcggtggcacgggaaggtgtcgtcgtcgtggccgcccagtcggtgaacgcaccggaatccgacgtcggtagattatgcctcct	3989300
<---------AHL20(2) <---------AHL20(2) --------->AHL20(2) --------->AHL20(2) <---------ZAT2 --------->AHL20(2) --------->ZAT2 --------->AHL20(2) <---------At4g35610 --------->AHL20(1) --------->ZAT14 --------->At4g35610 --------->AHL20(1)--------->AHL20(2) --------->At4g35610 <---------ALFIN1 <---------AHL20(2)--------->AHL20(1) <-----------HVH21 <-----------RAV1(2) --------->AHL20(2)<---------AHL20(2)--------->ANAC46 ----------->RAV1(1) --------->TOE2(3) --------->AHL20(2) --------->AHL20(2) ---------->DOF2 ->ZmHOX2a(1) <---------YAB1 --------->YAB1 <---------AHL20(2) ---------->DOF2 >>>>>>> ---------REM1(1) --------->TOE1(3) <---------AHL20(2)----------->GT1 <---------ZAT14
cgttgtagccacagctgattataccaaaaccctaatcccaaaaataaaataaaataaaaaaatttaatagaaaaaaataaaagtcacagcacaaagctcc	3989400
<---------WOX13(1) <------------CBF <---------ICU4 <---------YAB1 <---------YAB1 ------>ZmHOX2a(1) <----------DOF2 <---------MYB59 *TSS <-----------ARR10 ------>ZmHOX2a(2) <---------MYB59 --------->GLK1(2) <---------ARR14(2) ------->TEIL --------->ARR14(2) --------->ARR14(2) <-------TEIL <---------ARR14(2) ------->TEIL ----------->TBP >>>>>>>>>>LFY --------->ANAC46 ---------->DOF2 <------ZmHOX2a(2)
aatgtacataacccataaatctacacaaatctgagctttgatagagaaagatgaagatggatcctaattgctataaaaccaaaaacaaaaacaaatccaa	3989500
--------->ANAC46 --------->ARR11(3) --------->ANAC58 <---------ARR11(3) --------->ANAC58 <-----------GT1 <---------ALFIN1 <---------RVE1(1) --------->ZAT2 ---------->DOF2 <---------ARR11(3) <---------At4g35610 <---------ZAT14 ---- <---------GLK1(2) --------->At4g35610 --------->ZAT14 ----- --------->ARR11(3) <xxxxxxxxxxxxxxxxxxxx smallRNA(se3) <----------DOF2 ------>ZmHOX2a(1) --
aatagattttttcgaaatcttctgtcactatctctgctcacacgcagtggaaaaagaacactgcgactctttttcttcgcttcctctctctatctaacaa	3989600
<-----------RAV1(1) <---------TOE1(2) <---------ANAC58 ================================HOX2a_HOX2a <----------DOF2 ------>ZmHOX2a(1) <---------ANAC58 <-----------GT1 --------->ARR14(2) <----------DOF2 <----------DOF2 <---------MYB52(1) ------>ZmHOX2a(2) ------>ZmHOX2a(2) ------->RAV1(2) --------->ARR11(3) <----------DOF2 --------->ARR11(3) ---->GLK1(2) <----------DOF2 <---------ARR11(3) <------------------------ANAC81 <---------DAG2 --------->HVH21 --------->MYB46(3) <---------At4g35610 <---------ARR11(3)
tctgacccgtttcctactttccttctcttaacaactgatcttttcttgttgctgtctgattttctttggtttcttcttgatcttttttacctttttaaaa	3989700
--------->ZAT14 <---------GLK1(2) <---------ICU4 --------->HSFB2a(2) <---------YAB1 >>>>>>>ZML2 <---------YAB1 --------->At4g35610 <---------ANAC58 <---------CCA1(2)--------->ICU4 ---------->DOF2 <---------AtMYB61 <---------ANAC58 <---------ICU4 ------->GAMYB ------->TEIL <---------ANAC58 <---------ANAC46 --------->YAB1 --------->At4g35610 <---------ANAC46 <---------HSFB2a(2) ------>ZmHOX2a(1)--------->YAB1 <---------ZAT14 ---- --------->ALFIN1 <---------ANAC46 <---------ANAC58 --------->ICU4 <---------At4g35610 <---
acagaagtggtgtatgttttggtttcttgttctagattgtttcgtcttgttcctgtctctctctaattatcatcatggacaactgcagaaagatagaata	3989800
<---------AHL20(2) --------->AHL20(2) --------->At4g35610 --------->AHL20(1) <---------ICU4 <---------AHL20(1) --------->YAB1 --------->AHL20(2) -------->HAHB4 <---------AHL20(2) <---------YAB1 <---------AHL20(2) --------->YAB1 <------MYB83 <---------AHL20(1) <------MYB46(1) --------->AHL20(2) ----------->GT1 <<<<<<<<<<MYB80 <---------AHL20(2) <---------YAB1 ------->MYC3 ----->DAG2 <-----------RAV1(1) <---------AHL20(2)<---------AHL20(2) ---------->DOF2 <-----------GT1 ------TOE2(3) <---------MYB46(3) <---------AHL20(2)<---------AHL20(2) <-------MYC3 <
aggcaagtgaatttttgttggtttaattttattttttattttatagttttattttattttataataatagctcaaagaaatggcacatgataccttcttc	3989900

AGI:	At5g12330.1
Description:	LRP1 (LATERAL ROOT PRIMORDIUM 1). similar to SRS7 (SHI-RELATED SEQUENCE 7) [Arabidopsis thaliana] (TAIR:AT1G19790.1); similar to SRS7 (SHI-RELATED SEQUENCE 7) [Arabidopsis thaliana] (TAIR:AT1G19790.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN59914.1); contains InterPro domain Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511); contains InterPro domain Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); contains InterPro domain Protein of unknown function DUF702 (InterPro:IPR007818)
Range:	from: 3987376	to: 3989407	Orientation: Reverse
Links:	TAIR MIPS

Please cite the corresponding publications when using AthaMap.