Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        ----------->GT1                                                      --------->YAB1                                                     <---------YAB1 <------MYB46(1)                                                     <---------TOE2(3)                        --------->ZAT18              <---------TOE1(3) <-------TEIL               --------->TOE1(3)               <---------------AGL15----------->GT1                --               --------->TOE2(3)            ------>ZmHOX2a(2)       <------MYB83                   <-      <----------DOF2   <---------ZAT18     <-------TEIL       <---------YAB1                     <--  <----------DOF2  ---------->DOF2         <------ZmHOX2a(2)  <---------TOE2(3)        --------->MYB59 --WRKY18(1) <---------ARR11(3)           <---------ARR14(2)  <---------------------WRI1   <--------- -->HVH21   <------ZmHOX2a(1)             --------->ARR14(2) <-----------GT1   <----------DOF2<------   gaaactttctttgaggaccttaaaagtccacaacgtttttatgggatccatatttatggtaatttacgataggtacaatgactttgagttaggctttagg  3914100     <--------P   ----------->GT1   <------MYB46(1)   <------MYB83                                                                       <---------ANAC55(2) <---------WOX13(1)       --------->YAB1                                              --------->ANAC46 ------->ATHB12           ----------->GT1                                             --------->ANAC55(2) --------MYB46(3)      --------->YAB1                                                 --------->ANAC58 -----TEIL       ----------->GT1                                                      --------->ANAC55(1) -DOF2          <---------TOE2(3)                                                     --------->ANAC58 ---TOE2(3)   ---------->DOF2             >>>>>>>ZML2                             --------->YAB1   ttgattggtagattaacaaaggtaagaatagtaaaccatttgttctagttatctgttttgaaaatgagatagaactaatttgtatcatacgcaatgtctc  3914200                                                   ----------->HVH21                                                 <---------bZIP60(1)                                         <---------HSFB2a(2)                                         --------->HSFB2a(2)                                     --------->ZAT14                                     <---------ZAT14  --------->bZIP60(1)              <-----------GT1        --------->ZAT18  <---------bZIP60(1)              --------------     <---------At5g28300   ---------->DOF2       --------->bZIP60(1)         --------->TOE2(3)    <-----------GT1        <---------ZAT14       <---------bZIP60(2)   --------->AtMYB61  <----------ID1 <----------DOF2           --------->ZAT14  --------->YAB1       --------->YAB1     ----------->GT1   aagcttttactgttttttacagaaaacagtaaaccggactgtactagaatgatgtgacataagtcaaaaatcaccaaaacataaatgagaaaaaaacaaa  3914300                            <-----------HVH21                           --------->ALFIN1             --------->HSFB2a(2)                          ------->MYC3    <---------MYB46(3)            --------->PCF2                          --------->TOE1(2)        <---------ALFIN1   <-----------GT1                          <-------MYC3<---------DEAR3(1)<---------HSFB2a(2)----------->RAV1(1)                         <---------TGA1a  --------->MYB55(2)  ----------->GT1 ---------->DOF2 <------                         ==============================================bZIP_DOF            <---------HSFC1(2) ---------->ANAC81       --------->TGA1a --------->ALFIN1   ---------->DOF2<---------ALFIN1--------->HSFC1(2)   caaacaaaaatttagtagagttttcaaacgtgtgagtggcacggtgggagggaacactctagaaaagaaaattagccccacaaagtcactagaagcatct  3914400                                                                                       <---------ARR14(2)                                                                                      <-------GAMYB                                                                                     ----------->GT1                                                                                    <---------DEAR3(1)                                                                                    <---------ANAC46                                                                                    <---------RAP2.6(2)                                                                                  ------------>AtMYB77                                                                                  ------------>MYB.PH3(1)                                       <---------At4g35610             <---------ZAT2<---------MYB46(3)                                       --------->At4g35610             <---------At4g35610  --------->ANAC46                     <---------ZAT2                  --------->ZAT2<---------DEAR3(2)  --------->ANAC58                   --------->ZAT18      <---------GLK1(2)--------->REM1(1)        -  --------->ANAC58            <---------ZAT6           --------->ANAC46--------->At4g35610         -- ---CCA1(2)      <-----------GT1     <---------ZAT18<---------REM1(2)*TSS <-------TEIL--------->At5g28300   cttcaaggcattctctggtttaccctattttagagtgagtgagctcgtcttctctccacagaaacttaacttgagctgcatcaatggcggttacattttc  3914500                                                         --------->REM1(1)                                                    <---------------AtSPL8                                                    <---------------AtSPL3              --------->ATHB51                                                    --------------->AtSPL8              <---------ICU4                                               --------->At5g28300            --------->KAN4(2)        --------->ANAC46                      --------->LBD16                 <---------ARR14(2)      <---------ALFIN1                        ----------->GT1  <---------ANAC46      --------->YAB1      --------->ANAC46                       --------->ATERF1(2)         --------->ANAC58     <---------REM1(2)                       <---------ATERF1(2)--------->LBD16   <----------DOF2    <---------ALFIN1                  --------->ARR11(3)------->TEIL     --------->ANAC58 ------>ZmHOX2a(2)                <------ZmHOX2a(1) --------------->AtSPL3    --------->ARR14(2)   <- -------->GLK1(1)          --------->TOE1(2)<---------LBD16   <---------LBD16<----------TaMYB80   <-- ------->ARR11(3)<---------ARR11(3)   <---------ARR11(3)<-------TEIL     --------->ANAC46         <<<   tgatctccacacagagcgaggtctcaaaaccctcgaggaacatctcgccggtaaaacgtacatctccgggtaaacacgcatattctttcataatttgcta  3914600                                                                                <---------MYB46(3) <-                                                                              <-------GAMYB        --    --------->YAB1                                                     --------->At4g35610        --- --------->WOX13(1)                                   <---------MYB52(1) <----------DOF2   <---------TOE2(3) --------YAB1     --------->ARR11(3)            <---------GLK1(1)      <---------At4g35610 <---------TOE1(3) -------ARR11(3)  <---------GLK1(2)     --------->ARR11(3)          <------ZmHOX2a(2)   ----------->HVH21 <<<<<<<GT-1    ----------->ARR10      --------->REM1(1)        <---------At4g35610   <---------ANAC46   tatcattcatcaatagcttagattttgcacagtttctacttacatcttggaactcggttttgtttcagcgatcagctttcggttgatgatgtgaaggttt  3914700                                                       --------->GLK1(2)               <---------ARR14(2)                     <---------GLK1(2)     <---------RAP2.6(3)                           --------->SPL7    <---------ANAC58                             <---------SPL7    <---------ANAC58  --------->ALFIN1         <---------------AtSPL8               <-------TEIL    <---------ANAC46  ----------->HVH21        <---------------AtSPL3    ------>MYB83--------->MYB52(2)   ----------------->AGL1<---------AtMYB61     --------->ALFIN1<---------ANAC58  <---------HSFB2a(1)  ------>NtERF2--------->GLK1(2)          <---------STY1(2)    <---------ANAC58 --------->DAG2 --------At4g35610  <---------At4g35610   --------->STY1(2) <---------MYB52(1)  <---------------AtSPL8 ------->At4g35610<-----------RAV1(2)    --------->ANAC58  <-------GAMYB ------>MYB46(1) ------>ANAC46 --------->ARR14(2)        --------->ANAC58 <-----------RAV1(1) ---------->DOF2  <-----   acgctgccgtattggagaatccaggtgatggttttcccaatgctagcaagtggtacgattctgttgcttctcacctagctaaaaggttcgttttattctc  3914800                                                                                       --------->MYB52(1)                                                                                    <---------At4g35610                             --------->ATHB12                                    ---------->DOF2                           <---------WOX13(1)                                 --------->LBD16                    ------>ZmHOX2a(2)           --------->YAB1               --------->LBD16                  --------->ARR11(3)            <---------ICU4               <---------LBD16        <---------ANAC58 --------->ATHB12      --------->ICU4               <---------LBD16        <---------ANAC58<---------YAB1<----------DOF2    --------------------->WRI1 --------->At4g35610 ----YAB1         <---------ARR11(3)<----------DOF2      <----------DOF2   <---------LBD16          <   attcgtttttgcttcttgttgatcttctgattgaatggctctttggagaatgatgacttctttgaatgtttcagttttcccgggaaagcagacggagtga  3914900          <---------REM1(1)          =========================RAV          --------->ALFIN1       <---------AtMYB61       --------->ALFIN1     <---------MYB46(3)    --------->ALFIN1    <---------AtMYB61  <------MYB46(1)                                                            ------>NtERF2  <------MYB83                                                               >>>>>>>>>>>>>>>>>LFY --------->ALFIN1                                                           --------->ANAC46 <---------AtMYB61                                        ----------->GT1   <---------bZIP60(1) --------->MYB111(2)   --------->At4g35610            --------->DAG2        --------->bZIP60(1) --------->MYB55(2)    <---------At4g35610           ---------->DOF2        --------->ANAC58 --------->MYB111(1)   ----------->RAV1(2)         <---------------AGL15    --------->ANAC58 <---------MYB46(3)------>ZmHOX2a(1)         <---------TOE2(3)           ----------->TGA1 --------P<-----------RAV1(1)<---------At4g35610   --------------->AGL15 ----------->HVH21   gagttggtggtggtgttgctcctccatctgaagctcatccacatactgaggtactaaaagtagtcaaaatatggaatgacgccaatgtaatctgtttgta  3915000  Previous    Next  AGI:  At5g12100.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G65560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15979.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 3911364    to: 3914081    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g12110.1    Description:  elongation factor 1B alpha-subunit 1 (eEF1Balpha1). Identical to Elongation factor 1-beta 1 [Arabidopsis Thaliana] (GB:Q84WM9;GB:Q9SCX2;GB:Q9SCX4); similar to elongation factor 1B alpha-subunit 2 (eEF1Balpha2) [Arabidopsis thaliana] (TAIR:AT5G19510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67292.1); contains InterPro domain Translation elongation factor EF1B, beta/delta chains, conserved site; (InterPro:IPR001326); contains InterPro domain Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange; (InterPro:IPR014038); contains InterPro domain Glutathione S-transferase, C-terminal-like (Inter Range:  from: 3914469    to: 3915969    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.