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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
YAB1
--------------->
AGL15
<---------
AHL20(1)
<---------
ANAC58
<---------
AHL20(2)
<---------
MYB52(1)
<---------
DAG2
--------->
AHL20(1)
<---------
At5g28300
<---------------
AGL15
<
<---------
YAB1
<-----------
GT1
--------->
TOE2(3)
<
--------->
AHL20(2)
<---------
DAG2
<---------
ANAC46
-
--------->
AHL20(1)
--------->
TOE1(3)
----------------->
AGL3
-
<---------
ICU4
--------->
TOE2(3)
<-----------
GT1
-
--------->
ICU4
<-----------
GT1
<---------
ANAC58
<-
atcagtctaaatattatatttccctagttagaatgtctaaattaccttatataccgtttggcttaaaacaaatcaccttatatagtgcaagtgaatcact
3100800
--------->
YAB1
<---------
ICU4
--------->
YAB1
<---------
MYB52(1)
<---------------------
WRI1
--------->
HSFC1(2)
--------->
HSFB2a(1)
<---------
HSFB2a(1)
--------->
DAG2
<---------
HSFC1(2)
<---------
TOE2(3)
---------
ARR14(2)
---------->
DOF2
-----------
ARR10
--------->
ZAT6
------
-------->
ARR14(2)
<---------
ZAT18
--------->
At4g35610
-------->
ARR11(3)
<----------
ID1
<---------
YAB1
--------->
ZAT18
--------->
MYB52(2)
-------->
GLK1(2)
---------->
DOF2
<----------
DOF2
--------->
YAB1
---------->
DOF2
<
--------
GLK1(2)
<---------------------
WRI1
<------
ZmHOX2a(1)
--------->
ZAT14
<-----
agaatcttctccgataatcacaaactcgaaaagaacaaataagctttccattatagattaggacattgaattagaacactaaagtaaaaggttagctata
3100900
<---------
At5g28300
--------->
YAB1
-------->
HAHB4
--------->
GLK1(1)
--------->
YAB1
--------->
ICU4
-----
------------>
CBF
<-----------
GT1
--------->
YAB1
<-----------
GT1
----->
TBP
--------->
AHL20(2)
<---------
YAB1
<---------
ALFIN1
---------->
ID1
-----
-------
TEIL
<---------
AHL20(2)
<---------
DAG2
<---------
GLK1(1)
<<<<<<<<<
TBF1
<---------
ARR11(3)
----
YAB1
--------->
AHL20(2)
------>
NtERF2
<---------
YAB1
<----------
DOF2
------>
ZmHOX2a(1)
-----
aatgcatacaatctatttaataatacattttaccgccttataaatgatgaattcccacatttctttattcttcttcgtccttcaagatttaacaaaacac
3101000
----
<---
----
--------->
ICU4
-----
----------->
GT1
<----
------>
ZmHOX2a(2)
------>
ZmHOX2a(1)
---------->
DOF2
--------->
ARR11(3)
<---------
ANAC46
<---------
ARR11(3)
---------->
DOF2
<---------
ANAC58
<---------
TOE2(3)
<---------
ARR14(2)
----------->
RAV1(1)
<---------
ANAC58
<---------
TOE1(3)
--------->
ARR14(2)
---->
ANAC58
<------
MYB46(1)
--------->
ARR11(3)
<---------
CCA1(2)
---->
ANAC58
<------
MYB83
<---------
ARR11(3)
<---------
HSFB2a(2)
-
---->
ANAC46
----------->
GT1
<---------
AtMYB61
<------
ZmHOX2a(2)
--------->
HSFB2a(2)
<-
acaacaacaaaaaaagacgatggtgaaactcatggggatggtatagcgtgaaagatcgtaattttgaggtaaatgtttcttctagtatatctcctctaat
3101100
<---------
AHL20(2)
--------->
AHL20(2)
---->
HAHB4
--------->
DAG2
------
ICU4
---------->
DOF2
----->
YAB1
<---------
ATHB12
<---------
ZAT14
---->
ICU4
<-------
TEIL
--------->
WOX13(1)
--------->
ZAT18
--------->
AHL20(2)
-----
ATHB51
--------->
YAB1
<----------
DOF2
<---------
ARR11(3)
----
-------->
YAB1
--------->
MYB46(3)
<----------
DOF2
<-----------
GT1
------->
TEIL
--------
YAB1
------------>
CBF
----------->
GT1
--------->
ZAT14
--------->
ARR11(3)
----
tatgaaaataaatacattattcaacaatcactaactaaaagtgtaactttcacactttgtgcagagcatatttttcaagataatatacaaaa
atgtatca
3101200
--------->
ANAC58
<---------
AHL20(2)
--------->
ANAC58
--------->
AHL20(2)
--------->
CCA1(2)
--------->
ANAC46
<----------
ID1
--------->
ANAC58
---------->
DOF2
--------->
ANAC58
--------->
ANAC46
----->
ANAC58
<---------
YAB1
--------->
ANAC58
<---------
ATHB12
----->
ANAC58
<-----------
GT1
--------->
ANAC58
--------->
WOX13(1)
<
agaaactaagcaattttatcatttatggctacttgctgtccaagaaagagacgaagcaagagaacatttgaaacaatcactcgtcgaactgtctagatta
3101300
<------
ZmHOX2a(2)
--------->
LBD16
--------->
LBD16
<---------
LBD16
--------->
ANAC46
--------->
ANAC46
--------->
MYB46(3)
--------->
ANAC58
--------->
ZAT6
------>
MYB83
<---------
ICU4
--------->
ANAC58
--------->
HSFB2a(1)
------>
MYB46(1)
--------->
DEAR3(1)
<---------
HSFB2a(1)
--------->
AtMYB61
<---------
YAB1
----------->
RAV1(1)
--------->
YAB1
------
ZmHOX2a(1)
<----------
DOF2
----------->
RAV1(1)
--------->
MYB46(3)
<---------
ATHB12
--
caggaatgtttcaacactattcttttgtccgaagaccaacaaataccccattattcttactcagaaaccacagacgaaacccccgatcatcaaaaactgt
3101400
-
--
--
----
---------
<------
NtERF2
<------
NtERF2
--------->
LBD16
--------->
ANAC58
--------->
DEAR3(1)
--------->
ANAC58
--------->
ANAC46
<---------
SPL7
<---------
At4g35610
----
--------->
GLK1(2)
<---------
CCA1(2)
------>
ZmHOX2a(1)
<---------
ARR11(3)
--------->
HSFB2a(2)
------>
ZmHOX2a(2)
------->
GAMYB
<---------
LBD16
<---------
YAB1
------>
ZmHOX2a(1)
==================================
HOX2a_HOX2a
--------->
GT1
--------->
HSFB2a(2)
<---------
GLK1(2)
--------->
ETT(2)
--------->
At4g35610
-------
atagttacaataacttctccaacgagtctccttcgcgattctcgtccgcatcgtcgatcgatctcgtctctaactcaactgtctattcctcgccggagac
3101500
<---------
MYB46(3)
<---------
MYB46(3)
<---------
WOX13(1)
--------->
At4g35610
<---------
YAB1
--------->
SPL7
-------->
ANAC46
--------->
LBD16
---->
MYB46(1)
<---------
SPL7
---->
MYB83
--------->
HSFB2a(2)
-----
----->
TOE1(2)
<---------
HSFB2a(2)
<---------
ARR11(3)
<-----
>
ATERF1(1)
<---------
LBD16
--------->
ARR11(3)
<------
ZmHOX2a(1)
----->
TOE2(2)
<---------
At5g28300
<---------
At4g35610
<---------
GLK1(2)
--------->
GLK1(2)
-->
GLK1(1)
<-----------
GT1
<-----------
RAV1(2)
<------
ZmHOX2a(1)
<-----------
RAV1(1)
-----
ctacgactctgattgttacagcctccggacgttgcagatgggttttgcatttgaggagaagaaagattttgagacccttgtgctggagaatataggactc
3101600
<---------
WOX13(1)
<-------
GAMYB
<---------
ANAC58
<------
MYB83
<------
MYB46(1)
--------->
MYB55(2)
--------->
MYB52(2)
<---------
MYB46(3)
--------->
ZAT2
--------->
WRKY12
<---------
ZAT2
--------->
WRKY38(1)
<---------
At4g35610
---------->
DOF2
<---------
ANAC58
<--------
P
-------->
ATHB1
<---------
AtMYB61
--------->
At5g28300
--------->
ATHB12
<---------
TOE1(2)
----------->
GT1
--------->
YAB1
<---------
TOE2(2)
--------->
LBD16
<---------
YAB1
<---------
MYB52(1)
<---------
ANAC46
--------->
ANAC58
------>
ZmHOX2a(2)
-
<---------
LBD16
--------->
ANAC58
<---------
MYB46(3)
<-----------
<-----------
RAV1(1)
--------->
ANAC46
--------->
At4g35610
<-----------
HVH21
<-
---->
ANAC58
--------->
MYB52(1)
<---------
ATHB12
<-------
GAMYB
<---------
ARR14(2)
--
----
LBD16
--------->
ETT(1)
<---------
HSFB2a(2)
--------->
ATHB12
--------->
ARR14(2)
-------
---->
ANAC58
<------
NtERF2
--------->
HSFB2a(2)
--------->
ARR14(2)
--------->
YAB1
--------------
ggaagaatgttgccggagaacggtaagttccagcaagctatcattgaagctggatcgttggttgactcattgttcataaccggtccgattccaaaatgga
3101700
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AGI:
At5g09940.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59760.1); similar to 117M18_2 [Brassica rapa] (GB:AAZ66921.1); contains InterPro domain Protein of unknown function DUF1635 (InterPro:IPR012862)
Range:
from: 3101193
to: 3101834
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.