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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
YAB1
--------->
At4g35610
--------->
ATHB51
--------->
ATHB12
--------->
ICU4
<---------
YAB1
<--
--------->
ANAC46
<---------
At4g35610
---
--
ARR14(2)
--------->
TOE2(3)
---
->
ARR14(2)
--------->
YAB1
<---------
ZAT6
<---------
At5g28300
---
->
GLK1(2)
<---------
ICU4
--------->
YAB1
--------->
RAP2.6(3)
<-----------
GT1
<--
-
GLK1(2)
<---------
ATHB12
--------->
MYB52(1)
<------
ZmHOX2a(1)
--------->
DAG2
gcaatcccctcgaaacccaaacattattgagctctgataactcgacaaaaacggccaagagagttagaaaggatttac
catgtaatgctcgataagggga
2602500
<
-
<----------
DOF2
<---------
ARR14(2)
-
------>
ZmHOX2a(2)
<---------
At4g35610
<
<---------
RVE1(1)
<------
NtERF2
<--------
<------
ZmHOX2a(2)
<---------
ATERF1(1)
==========
<---------
ARR14(2)
<---------
RAP2.3(1)
------>
ZmHOX2a(2)
--------->
AGP1
----------->
RAV1(1)
===========
<---------
ARR14(3)
<---------
ATERF1(2)
<------
ZmHOX2a(2)
--------->
ARR14(3)
--------->
ATERF1(2)
<---------
ARR14(2)
--------->
ARR11(3)
<---------
ATERF1(2)
--------->
ARR14(2)
<---------
ARR11(3)
<---------
LBD16
--------->
ATERF1(2)
<---------
ARR11(3)
--------->
ARR14(2)
--------->
ARR14(2)
--------->
DEAR3(2)
--------->
ARR11(3)
----------->
ARR10
<---------
ARR14(2)
--------->
SPL7
======================
HOX2a_HOX2a
--------->
HSFB2a(2)
<---------
GLK1(2)
--------->
MYB52(1)
=====================
HOX2a_HOX2a
<---------
HSFB2a(2)
<------
ZmHOX2a(2)
<---------
SPL7
<---------
WOX13(1)
<---------
ARR14(3)
-------
HSFC1(2)
<---------
ARR11(3)
<---------
ANAC58
<------
MYB83
--------->
CCA1(2)
--
------>
MYB46(3)
--------->
ARR11(3)
--------->
GLK1(1)
--------->
ARR14(2)
--------->
ARR14(3)
------>
HSFC1(2)
<---------
ARR14(2)
<------
NtERF2
<---------
DEAR3(1)
<----------
ID1
<-
------>
HSFB2a(1)
--------->
ARR14(2)
--------->
LBD16
------>
NtERF2
<------
ZmHOX2a(1)
----
-------
HSFB2a(1)
--------->
CCA1(2)
<---------
YAB1
<---------
ANAC58
<------
MYB46(1)
----------->
ARR10
accatctcgacgagatcttttaagagacgacgatctagattctcattgccggagttcgtaccggcggcagattggtgaggagagagacgaagatcgtcat
2602600
--------->
At4g35610
<-----------
RAV1(2)
--------->
ANAC58
--------->
ANAC58
--------->
DEAR3(1)
<------
NtERF2
<
--------->
ATERF1(1)
-
------>
NtERF2
--
<---------
ATERF1(1)
<-
--------->
LBD16
--
---------
ATERF1(2)
<-
-------->
ATERF1(2)
<---------
ZAT2
<-
-------->
DEAR3(1)
--------->
At4g35610
--
---------
DEAR3(1)
--------->
ARR14(2)
--------->
ARR11(3)
-------
---
HVH21
<------
ZmHOX2a(1)
<---------
ARR14(2)
<---------
At4g35610
<-------
=================
HOX2a_HOX2a
<----------
DOF2
<---------
At4g35610
--------->
LBD16
=================
HOX2a_HOX2a
--------->
GLK1(2)
<-----------
RAV1(1)
<---------
ANAC46
------->
ATERF1(1)
--------->
ARR14(2)
<---------
RAP2.6(2)
------>
ZmHOX2a(1)
--------
LBD16
<---------
ARR14(2)
<---------
At4g35610
==============
----->
DEAR3(1)
<---------
SPL7
<---------
GLK1(2)
<-----------
RAV1(1)
==============
cgccggcgagccaggagctatcgtccccaaacccagaatcgctttgcaaatccatgaaatgttgctgctgctcatacat
cttcttcgtcctccgtataat
2602700
<----------
DOF2
--------->
At4g35610
------>
ZmHOX2a(2)
------
ZmHOX2a(2)
-------->
CCA1(2)
------->
AGP1
--------
ARR14(2)
--------->
ZAT2
------->
ARR14(2)
<---------
ZAT2
--------
AGP1
--------->
ZAT14
--------
ARR11(3)
<---------
ZAT14
------->
ARR11(3)
<---------
At4g35610
--------->
AHL20(2)
-->
YAB1
--------->
At4g35610
<----------
DOF2
--
YAB1
--------->
ATHB12
--------->
GLK1(2)
<---------
AHL20(2)
<-----
======
HOX2a_HOX2a
----------->
RAV1(1)
---------->
DOF2
<---------
AHL20(2)
=======
HOX2a_HOX2a
--------->
ANAC46
--------->
CCA1(2)
<---------
YAB1
<---------
AHL20(2)
agatctgcttcagtgattagtcttcaacaccagagagtctgagcagagagagagatagacgaagagaaagacttgatttttattttctttaaaaaaattc
2602800
<---------
At5g28300
<-----------
GT1
------>
ZmHOX2a(2)
----------->
RAV1(2)
<-----------
GT1
<---------
CCA1(2)
<-------
TEIL
<---------
YAB1
<----------
DOF2
<---------
TOE1(2)
<-----------
GT1
--
--------->
LBD16
--------->
ARR11(3)
--------->
At4g35610
<---------
ICU4
<-----
<---------
ANAC58
<---------
ARR11(3)
<---------
At4g35610
--------->
YAB1
------
--
TEIL
<---------
ANAC58
<---------
AGP1
--------->
TOE2(3)
<---------
YAB1
<-------
gtttcattcttcgttccgagtctgagctttggatctcaatctccaacgttcatctgaaactatccaacttataattaccattttaccctcatgtttttca
2602900
<---------
ANAC58
<---------
DAG2
<---
<----------
DOF2
<---------
TOE2(3)
<------
------->
ZAT14
<---------
ANAC58
--------->
AHL20(2)
-------
------
GT1
<---------
ANAC58
--------->
YAB1
<-----------
GT1
<------
--->
ZAT6
<---------
ANAC58
<---------
ANAC58
--------->
TOE2(3)
<----------
DOF2
<--------
----
GT1
<---------
ANAC58
*
TSS
<----------
DOF2
------>
ZmHOX2a(2)
<---------
YAB1
<------------
CBF
ctattctcttgacttgcccttgcttttt
gaatttctttccttcttctatgatcccttaaatttaacattatgctttgtttaaaatttggaaattgagatt
2603000
--------->
ANAC55(2)
--------------->
AGL15
<---------------
AGL15
----------------->
AGL2
=======================================================================
<-----------------
AGL2
----------------->
AG
------------>
CBF
<-----------------
AGL1
<-----------
GT1
<---------
DAG2
<----------
DOF2
--------
GT1
<----------
DOF2
------>
ZmHOX2a(2)
<---------
ANAC58
---
GLK1(2)
--------->
AHL20(2)
<---------
YAB1
<---------
ANAC46
-->
ARR11(3)
--------->
YAB1
<---------
ANAC55(2)
<---------
ANAC58
<-
---
ARR11(3)
<---------
AHL20(2)
--------->
KAN4(2)
--------->
ATHB12
<--
-
TOE2(3)
------------>
CBF
----------------->
AGL1
--------->
TOE2(3)
<-----------
HVH21
ttccattttacaatttttcaattatatgcttttccaatacgggttattctgatcgaaaacgttattgggtcgtgtctttcaatcttgtccggtcttgagc
2603100
---
<---
--------->
HSFB2a(2)
----
<---------
HSFB2a(2)
----
<---------
HSFC1(1)
<---
<---------
ARR14(2)
xxxxxxxxxxx
--------->
ARR14(2)
--------->
ICU4
<---------------
AGL15
<---------
TOE2(3)
--------->
LBD16
<xxxxxxxxxxxx
--------->
HSFB2a(2)
--------->
ANAC58
xxxxxxxxxxxxxx
----------------->
AGL1
--------->
ANAC46
<---------
ARR11(3)
----------------->
AG
--------->
ANAC58
<-------
TEIL
--------->
ARR11(3)
<XXXXXXXXXXXXXXXXXXXX
MIR832-5P
------->
TEIL
--------->
ARR11(3)
xxxxxxxxxxxxxxxxx
=========================
MADS_MADS
<---------
ARR11(3)
<---------
ARR14(2)
xxxxx
--------
MYB52(1)
<-------
TEIL
<---------
CCA1(2)
<---------
ANAC46
xxxxxxxxxxxxxxx
-------
RAP2.6(3)
--------->
MYB52(1)
------->
TEIL
<-----------
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
cgttttggttcccgattcgagaaaaccggttcacgaacttcatgaatctatatatctatatatacatttttggaggggatttttgaagataatgttgaag
2603200
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
===================================
HOX2a_HOX2a
--------->
LBD16
------>
ZmHOX2a(1)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
------>
ZmHOX2a(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<------
ZmHOX2a(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
ARR14(2)
--------->
ARR11(3)
--------->
ARR14(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
LBD16
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
ICU4
<xxxxxxxxxxxxxxxx
smallRNA(i)
------>
CCA1(2)
<---------
LBD16
xxxxxxxxxxxxxxxx>
smallRNA(s)
------
ARR11(3)
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
----->
ARR14(2)
--------->
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
----->
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
------
ARR14(2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<-----------
GT1
<---------
LBD16
xxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
------>
ZmHOX2a(2)
xxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
AHL20(2)
xxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
AHL20(2)
xxxxxx>
smallRNA(fl3)
<-----------
GT1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
<-----------
GT1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxx>
smallRNA(si3)
----------->
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ARR14(2)
atttgagccataattcaacaattaattcaaatgggtgaattttacccggtttaactctgttcggatcctggataacatgtttaattctgttctgatctgg
2603300
----------->
GT1
--------->
AHL20(2)
--------------->
AGL15
<xxxxxxxxxxxx
<---------
AHL20(2)
<---------
MYB59
<---------
ARR11(3)
<--------
ATHB1
<-----------
GT1
--------->
ARR11(3)
<--------
HAHB4
--------->
AHL20(2)
--------->
RVE1(1)
<---------
ICU4
<---------
AHL20(2)
--------->
YAB1
--------->
YAB1
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ATHB51
--------->
ATHB12
--------->
AHL20(2)
--
-------->
HAHB4
<---------
ATHB12
<---------
AHL20(2)
xx
<---------
ATHB12
--------->
ICU4
<---------
AHL20(2)
----
--------->
DAG2
<---------
YAB1
<---------
YAB1
------>
MYB83
<---------
AHL20(2)
--
---------->
DOF2
--------->
ICU4
--------->
AHL20(2)
<---------
AHL20(2)
-----
<---------
AHL20(2)
<---------
ATHB51
<---------
AHL20(2)
--------->
AHL20(1)
<----
--------->
AHL20(2)
--------->
AHL20(2)
<---------
TOE2(3)
--------->
AHL20(2)
<------
--------->
TOE2(3)
--------->
YAB1
--------->
AHL20(2)
------>
MYB46(1)
--------->
CCA1(1)
ataacattaatttttggaaaagttatctaaaaactaataattaaaaacgaaaattaatgatttaattaccaaatttaatataaataatatctctaaacta
2603400
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AGI:
At5g08120.1
Description:
MBP2C; protein binding. similar to MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G16000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67935.1)
Range:
from: 2600475
to: 2602928
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.