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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
<---------
AHL20(1)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ATHB12
----
------>
ZmHOX2a(1)
<---------
TOE2(3)
<---
---------->
ID1
--------->
ZAT14
--------->
AHL20(2)
<-----------
GT1
--------->
ZAT2
<---------
AHL20(2)
<---------
AHL20(2)
--------->
GLK1(1)
<---------
ZAT2
--------->
AHL20(2)
-----
AHL20(2)
<---------
GLK1(1)
--------->
At4g35610
--------->
AHL20(2)
-
MYB52(1)
<------
ZmHOX2a(1)
<---------
At4g35610
--------->
AHL20(1)
>
GT1
<-----------
GT1
<---------
TOE2(3)
--------->
REM1(1)
--------->
YAB1
-----
catttttttcctattttttaaaaaacaaaacaaaataagataaccataggaaatgccactctgttacaactcagcagtctaatgatatttaataaaatac
1378700
<---------
WRKY38(1)
<---------
WRKY12
<---------
WRKY45
--------->
WRKY18(1)
--------->
ATHB12
<<<<<<<<<<
WRKY11
<---------
YAB1
<<<<<<<<<<
WRKY6
------>
MYB83
<----------
DOF2
------>
MYB46(1)
<---------
MYB46(3)
<---------
MYB111(2)
----------->
AGL15
<---------
MYB111(1)
------------
AGL15
<---------
MYB46(2)
------------>
AGL3
--------->
YAB1
<---------
MYB59
-----
caattttagtggtttatggtcaacaaaaatagtttacaagcttagctagatgtgaatacatactatatactaccaaactagtttatgatttgtatatgaa
1378800
--------->
AHL20(2)
----------->
GT1
<---------
ICU4
--------->
ATHB51
<--------
HAHB4
<---------
YAB1
--------->
ICU4
--------->
At5g28300
<---------
YAB1
<-----------------
AGL3
<---
--------->
YAB1
<---------
AHL20(2)
--------->
ARR11(3)
<-----
--------------->
AGL15
<-----------------
AGL2
--------->
DAG2
<---------
At4g35610
---------->
DOF2
--------->
ICU4
<------------
AtMYB77
---------->
DOF2
--------->
At4g35610
--------->
YAB1
<---------
ICU4
------->
TEIL
---------->
DOF2
<----------
DOF2
<---
-->
TEIL
==========================================
MADS_MADS
<---------
TOE1(2)
<---------
ZAT2
tcaataaaagcgttagcataattagtatatataaatgtaactgtaattggaccaaagagataaagcatcttgggtttagtaagcttttgagctgatgatg
1378900
<--------
<--------
HAHB4
<---------
ICU4
--------->
ATHB51
--------->
ICU4
<---------
YAB1
<-----------
GT1
--------->
YAB1
<---------
YAB1
----------->
GT1
--------->
ARR14(2)
--------->
ANAC55(2)
--------->
GLK1(2)
--------->
ANAC55(2)
------
ANAC58
<---------
KAN4(1)
<---------
AHL20(2)
--------->
YAB1
----
YAB1
<---------
TOE2(3)
--------->
KAN4(1)
--------->
YAB1
<---------
MYB52(1)
<--
------
ANAC58
<---------
KAN4(2)
--------->
YAB1
--------->
AHL20(2)
<-----------
TGA1
cttatgtgattaatgtgaatataagaattagggaacaatcttgttgttaataacaatacttataacatttaaatgcccttaagtatcgtcataattacat
1379000
---
<--
<--
<--
---
-----------
<---------
ETT(1)
--------->
DEAR3(2)
------>
MYB83
-------->
P
---
------>
MYB46(1)
<xxxxxxxxxxxxxx
--------->
DEAR3(1)
<---------
DAG2
--------->
MYB46(3)
<----------
DOF2
--------->
DEAR3(2)
------>
ZmHOX2a(1)
------>
MYB46(1)
--------->
MYB52(1)
--------->
ARR14(2)
------>
ZmHOX2a(1)
------>
MYB83
--------->
ANAC58
<---
---------->
ID1
<-----------
GT1
-------->
P
--------->
ANAC46
<---
---
GT1
<---------
ARR14(2)
<---------
MYB59
--------->
AtMYB61
<---------
GLK1(2)
--------->
MYB46(3)
--------
DOF2
<----------
DOF2
----------->
TBP
*
TSS
--------->
ANAC58
<---
ctttgtccctatccttctctttttcacttttcctaatctctaatataaaaccaactcttgtcaaattc
aacaaaattctcacacaaaccgacccgacccg
1379100
<---------
At4g35610
--------->
At4g35610
<---------
DEAR3(2)
<---------
DEAR3(1)
<---------
MYB46(3)
<---------
ANAC46
---
<---------
ORA47(1)
----
------>
ARR14(2)
----
-------
ARR11(1)
----
-------
ARR14(2)
-----
---------
ARR10
----------->
RAV1(1)
-------
---->
TEIL
--------->
At4g35610
-------
>
HVH21
--------->
RAP2.6(2)
--------->
TOE1(3)
------
------>
GLK1(2)
--------->
At4g35610
--------->
LBD16
--------
xx
smallRNA(s)
<---------
At4g35610
------>
NtERF2
---------
------
CCA1(2)
--------->
ZAT2
<---------
LBD16
<---------
LBD16
------
GLK1(2)
----------->
RAV1(1)
<----------
DOF2
--------->
TOE2(3)
<-----
------
ARR14(1)
---------->
DOF2
<---------
MYB46(3)
--------->
ARR14(2)
<----------
DOF2
aatctggccggtgagaaa
atggaggtccaaagcagcagcaacaatggtggtcactcttctttctccagtctccgcgtctacctcaactctctttccgcga
1379200
<---------
LBD16
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ATERF1(1)
<---------
ATERF1(1)
<-----------
HVH21
------>
NtERF2
--------->
DEAR3(1)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
DEAR4(2)
--------->
RAP2.3(1)
<------
NtERF2
--------->
ORA47(2)
--------->
ATERF1(1)
<---------
ATERF1(1)
------>
NtERF2
--
--------->
ANAC58
<---------
DEAR3(1)
---------
--->
NtERF2
--------->
ANAC58
--------->
ANAC46
<---------
SPL7
----->
ANAC58
<------
NtERF2
<------
NtERF2
--------->
DEAR3(1)
----->
ANAC58
------>
NtERF2
--------->
ATERF1(1)
<-------
TEIL
<---
----->
DEAR3(1)
--------->
LBD16
<---------
ATERF1(1)
<---------
ABI4(2)
---->
ATERF1(1)
--------->
DEAR3(1)
<---------
DEAR3(1)
--------->
ARR14(2)
---->
HVH21
--------->
ATERF1(1)
--------->
SPL7
<---------
ARR14(2)
-->
ANAC46
<------
NtERF2
<-----------
HVH21
<---------
GLK1(2)
<
>
NtERF2
------>
NtERF2
<---------
ANAC58
<---------
SPL7
<---------
DEAR3(1)
---------
->
LBD16
--------->
LBD16
<---------
ALFIN1
<---------
ANAC46
--------->
At4g35610
>
ANAC46
<---------
LBD16
<---------
ANAC58
<---------
ANAC58
--------->
LBD16
<---------
ANAC46
----
ATERF1(1)
--------->
ANAC46
<---------
ALFIN1
<---------
ANAC58
------>
NtERF2
<------
NtERF2
cgccttctcgcttatcccgccgcgctatttccgtctccacctcttccgacgagatgagtcgcgtccgcgccgtctccggcgaacagatgcgccgtactct
1379300
<---------
MYB52(1)
<---------
DEAR3(2)
--------->
DEAR3(1)
<---------
DEAR3(1)
--------->
ATERF1(1)
<---------
RRTF1(1)
<---------
ERF1
--------->
ATERF1(1)
<------
NtERF2
<---------
RAP2.3(1)
<---------
ATERF1(1)
<---------
DEAR4(2)
<---------
DEAR3(2)
<---------
ORA47(2)
<---------
RAP2.3(3)
<---------
DREB2C(2)
<---------
DEAR4(1)
--------->
ETT(1)
<---------
ANAC58
--------->
ARR14(2)
<---------
RAP2.3(1)
<---------
DEAR3(1)
--------->
GLK1(2)
<---------
RAP2.6(1)
--------->
ATERF1(2)
<---------
YAB1
<---------
ARR14(2)
------>
NtERF2
<---------
ATERF1(2)
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
<---------
DEAR3(1)
--------->
DEAR3(1)
<---------
MYB52(1)
<------
ZmHOX2a(2)
<---------
AtMYB61
<----------
DOF2
<---------
ANAC58
<---------
DEAR3(2)
--------->
SPL7
<---------
GLK1(2)
--------->
RAP2.3(1)
<---------
MYB55(2)
<------
NtERF2
<---------
SPL7
--------->
ARR14(2)
<---------
RAP2.3(2)
--------->
MYB52(1)
--------->
ATERF1(1)
<---------
MYB46(3)
<---------
ARR14(2)
--------->
DEAR3(1)
--------->
AtMYB61
<---------
RAP2.3(1)
--------->
ALFIN1
--------->
ANAC58
<---------
ORA47(1)
--------->
DEAR3(1)
------>
NtERF2
------->
LBD16
--------->
ANAC58
<-----------
HVH21
--------->
MYB46(3)
<---------
DEAR3(1)
>
ZAT14
--------->
ARR11(3)
--------->
LBD16
<------
NtERF2
<-----------
GT1
--------->
ANAC46
------
LBD16
--------->
ATHB12
<---------
LBD16
<---------
ATERF1(1)
--------->
MYB46(3)
--------->
DEAR3(1)
---------
MYB52(1)
<---------
LBD16
<---------
HSFB2a(1)
<-----------
HVH21
<---------
HSFB2a(2)
>
SPL7
<---------
ARR11(3)
<---------
LBD16
<---------
DEAR3(1)
<---------
ALFIN1
--------->
HSFB2a(2)
ccggtggtacgatctcattggactcggaatcgggggaatggtcggcgccggtgtctttgtcaccaccggccgtgctagtcgtctcgacgccggtccttca
1379400
<------
NtERF2
--------->
ATERF1(1)
<---------
ORA47(2)
<---------
RAP2.3(1)
<---------
DEAR4(2)
--------->
ABI4(2)
<---------
DEAR3(2)
<---------
ATERF1(1)
<---------
MYB46(3)
--------->
ALFIN1
<---------
DEAR3(1)
<---------
ABI4(1)
--------->
ATERF1(1)
<------
NtERF2
------>
NtERF2
<---------
ATERF1(1)
--------->
LBD16
<---------
DEAR4(2)
<---------
RAP2.3(1)
--------->
ATERF1(2)
<---------
RAP2.3(2)
--------->
DEAR3(1)
<---------
DEAR3(1)
--------->
ATERF1(1)
<---------
LBD16
<------
NtERF2
--------->
RAP2.3(1)
<---------
ZAT18
<---------
RAP2.3(1)
------>
NtERF2
<---------
ATERF1(1)
--------->
DEAR3(1)
<---------
ETT(2)
<---------
ATERF1(1)
--------->
ETT(2)
--------->
DEAR3(1)
--------->
LBD16
--------->
ANAC58
--------->
ZAT14
<---------
LBD16
------>
NtERF2
--------->
ANAC46
<---------
ZAT18
--------->
ORA47(1)
<---------
ERF1
--------->
ANAC58
<---------
ZAT14
------>
NtERF2
<---------
DEAR3(1)
<
--------->
SPL7
---------->
CDC5
--------->
DEAR3(1)
<---------
ATERF1(2)
<---------
CCA1(2)
--------->
LBD16
<---------
DAG2
<---------
ARR14(2)
--------->
SPL7
----
<---------
ANAC58
--------->
DEAR3(1)
<----------
DOF2
--------->
ARR14(2)
<-----------
HVH21
<---
<---------
ANAC58
<---------
LBD16
------>
ZmHOX2a(1)
--------->
ANAC46
<---------
LBD16
--------->
ABI4(2)
attgtcgtctcttacgccatcgccgggctctgcgctctcctctccgctttctgttacaccgaattcgccgtccatctcccggtcgccggcggtgccttca
1379500
--------->
ZAT14
<---------
CCA1(2)
--------->
ZAT6
<---------
REM1(2)
--------->
LBD16
<---------
ICU4
<---------
ZAT14
--------->
ANAC55(2)
--------->
LBD16
------>
ZmHOX2a(2)
<---------
ANAC55(2)
<---------
LBD16
------>
ZmHOX2a(1)
--------->
REM1(1)
--------->
MYB52(2)
<---------
YAB1
<------
ZmHOX2a(2)
-------
TEIL
<---------
MYB52(1)
<---------
ICU4
--------->
ARR14(2)
<---------
AHL20(2)
--
----->
At4g35610
<--------
P
--------->
LBD16
=============
HOX2a_HOX2a
--------->
AHL20(2)
---
------
At4g35610
<-------
GAMYB
--------->
YAB1
<---------
ARR14(2)
<---------
AHL20(2)
---
gctacatccgtatcacattcg
gttagtctcccgcgaaaatcatcactactcctccgatctgttcacggttttctgaaaattttaatttcaaaatcaaaaa
1379600
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AGI:
At5g04770.1
Description:
ATCAT6/CAT6 (CATIONIC AMINO ACID TRANSPORTER 6); amino acid transmembrane transporter/ basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter. similar to CAT7 (CATIONIC AMINO ACID TRANSPORTER 7), cationic amino acid transmembrane transporter [Arabidopsis thaliana] (TAIR:AT3G10600.1); similar to hypothetical protein OsI_033960 [Oryza sativa (indica cultivar-group)] (GB:EAY80001.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62401.1); similar to amino acid transporter-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAX92723.1); contains InterPro domain Cationic amino acid transporter
Range:
from: 1379069
to: 1382420
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.