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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
ZmHOX2a(2)
--------->
CCA1(2)
--------->
AGP1
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ARR14(2)
<-----------
GT1
---------->
DOF2
<---------
CCA1(2)
<---------
LBD16
--------->
AHL20(2)
<--
<---------
HSFB2a(2)
<---------
AHL20(2)
---
<----------
DOF2
<---------
ARR14(2)
--------->
GLK1(2)
------->
TEIL
<---
-----
DOF2
--------->
HSFB2a(2)
---------->
DOF2
--------->
AHL20(2)
<----------
DOF2
<---------
ANAC46
tcatgcttttgttctcggaaaagatccagtgatgagaagagaaagaatttgaagattaaattgaatcttttatctttttcggtttaatagttgtttgttt
1323200
<---------
RAP2.6(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
------>
NtERF2
<---------
ATERF1(1)
<---------
RAP2.6(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
ZAT14
<---------
ANAC46
<---------
ZAT18
<---------
ATERF1(2)
--------->
ZAT18
--------->
ATERF1(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<--------
P
<---------
LBD16
<---------
MYB52(1)
--------->
RAP2.6(3)
--------->
LBD16
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
MYB52(1)
<---------
LBD16
<------
NtERF2
<---------
PCF2
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
SPL7
<---------
HSFC1(2)
--------->
LBD16
xxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
ARR11(3)
--------->
ANAC46
--------->
LBD16
<---------
MYB46(3)
<---------
ARR11(3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ALFIN1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
MYB46(3)
--------->
LBD16
<---------
MYB46(3)
--------->
ATERF1(1)
<---------
At4g35610
<---------
LBD16
<-------
GAMYB
--------->
LBD16
<---------
At4g35610
--------->
ALFIN1
---------
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
At4g35610
------>
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
At4g35610
<---------
AtMYB61
<--
------
YAB1
--------->
HSFC1(2)
<---------
LBD16
<------
NtERF2
<---------
ARR14(2)
<---------
ANAC46
<------
ttataatccggagatgtttccggttgttcactcgccggaaattgtgccggcttctgtctgcatattttgctgaaggggttgtgggtaccggtttactagg
1323300
<---------
LBD16
<---------
YAB1
<-------
TEIL
<---------
ARR11(3)
<-----------
HVH21
<------
MYB46(1)
--------->
GLK1(1)
--------->
LBD16
<------
MYB83
<---------------
AGL15
<---------
GLK1(1)
<---------
LBD16
----------->
GT1
--------------->
AGL15
<---------
LBD16
-------
GLK1(1)
--------->
ATHB12
--------->
YAB1
---------->
DOF2
<--------
---
TOE1(2)
<---------
MYB52(1)
<---------
TOE2(3)
<---------
YAB1
--------->
DAG2
------>
ZmHOX2a(1)
ttatccggttcacccggtttgtaagattggtttaatgaataaaaatcccttatgagaaaaaaaaaaaagctctggatatcatttgattactcctctttct
1323400
<-----------
RAV1(1)
--------->
ANAC58
<---------
MYB46(3)
--------->
ANAC58
<---------
DAG2
----------->
GT1
<----------
DOF2
--------->
ANAC46
-
<---------
ANAC58
<-----------
RAV1(1)
<---------
AHL20(2)
------->
GAMYB
-
<---------
ANAC58
<----------
DOF2
<---------
At4g35610
<-----------
GT1
-
--
DOF2
<---------
YAB1
<-------
GAMYB
--------->
AHL20(2)
<-----------
GT1
<----
aagatggcttcttatgctttttctttctgttgttgctcagttgctctgtttaaatatggactgtttttttaacccacaagtaaaacattttgagaaattt
1323500
<--------
HAHB4
--------->
AHL20(2)
--------->
ATHB51
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
At5g28300
-------->
ATHB1
<---------
ALFIN1
<---------
ATHB51
>>>>>>>>>>>>>>>>>
LFY
<---------
ETT(2)
-------->
ANAC58
--------->
ZAT18
----------->
GT1
-------->
ANAC58
<-----------
GT1
<---------
AHL20(2)
<---------
ANAC46
-------->
ANAC46
<---------
AHL20(2)
--------->
ALFIN1
-------
GT1
--------->
ICU4
--------->
ICU4
--------->
MYB52(1)
----------->
GT1
<------
acacaccactgtaattttttaatgtccacaattatttaaaaaaacatattcacacataaaaaacagaatggacgggaggggtataactggaaattttttc
1323600
----
------>
NtERF2
--------->
DEAR3(1)
<--------------
--------->
ATERF1(1)
------>
MYB46(1)
--------->
SPL7
<---------
MYB59
<------
NtERF2
<
--------->
TOE2(3)
<---------
ANAC58
<---------
ATERF1(1)
<------------
CBF
<---------
ANAC46
--------->
At1g77200
--------->
AHL20(2)
------>
ZmHOX2a(1)
<----------
DOF2
------>
NtERF2
<
<---------
AHL20(2)
*
TSS
--------->
YAB1
<---------
ANAC58
--------->
DEAR3(1)
--------->
AHL20(2)
------>
MYB83
--------->
TOE1(3)
<---------
ANAC58
----------->
HVH21
-----
GT1
<---------
MYB46(3)
--------->
TOE2(3)
<---------
ANAC58
--------->
DEAR3(2)
acatcgattaaattggttgaaaacctaatcgcctta
aaccctaattgtatcatcctcttccttgcgttctctctttctctctctcgccgacgacgaaaac
1323700
<-
--
--
-------
--------->
ANAC58
<---------
At4g35610
--------->
HSFB2a(2)
<---------
At4g35610
--------->
LBD16
<-
--------->
At4g35610
-------->
P
--------->
ANAC46
<---
<------
NtERF2
<--------
P
--------->
At4g35610
--------->
ANAC46
----->
TOE2(2)
<---------
HSFB2a(1)
--------->
ZAT2
--------->
ARR14(2)
-------
WRI1
---------->
DOF2
--------->
HSFB2a(1)
<---------
At4g35610
--------->
ANAC58
---------
ANAC58
>>>>>>>>>
TBF1
<---------
HSFC1(2)
<---------
ZAT2
<---------
ARR14(2)
---------
ANAC58
<----------
DOF2
--------->
HSFC1(2)
<<<<<<<<<
TBF1
<---------
LBD16
<-----
atgggtgccaaggcgaagaaagctttgaagaagaacatgaagaaggttgctgcttcggcttcttcttctcagctacctcttccccagaacccgaaacctt
1323800
--------
ZAT2
------->
ZAT2
<---------
ANAC58
------->
At4g35610
<---------
ANAC58
<---------
TOE1(3)
-->
TOE1(3)
>>>>>>>>>>>>>>>>>
LFY
<----------
DOF2
--------
At4g35610
--------->
AtMYB61
<---------
ANAC46
<---------
TOE2(3)
--------
RAV1(2)
--------->
MYB46(3)
--------->
ANAC55(2)
------->
TEIL
------
HVH21
<----------
DOF2
<---------
ANAC55(2)
<---------
GLK1(2)
cagctgattttttg
gtatttccttcgatactttctcttactaccaccattgtttcgatttcgtatcagactctttagggttttacattgaatctctctgt
1323900
<---------
ALFIN1
------>
NtERF2
<---------
ALFIN1
--------->
AtMYB61
<---------
ALFIN1
--------->
ANAC58
------>
MYB46(1)
--------->
DAG2
------>
MYB83
---------->
DOF2
--------->
ANAC46
--------->
ZAT2
--------->
ANAC58
<---------
ZAT2
--------->
AtMYB61
<---------
At4g35610
<---------
ALFIN1
--------->
At4g35610
--------->
MYB46(3)
<-------
TEIL
<---------
At5g28300
--------->
DAG2
<------
ZmHOX2a(1)
<-----------
GT1
---------->
DOF2
atgggtttttgttgatag
ccactagaaggaggtccagctcgaaaagctccagttaccaccccacctcttcagaataaagctactgtgctatacatcggta
1324000
<----------
DOF2
<---------
MYB52(1)
<---------
AHL20(2)
--------->
AHL20(1)
<-----------
GT1
<---------
AHL20(1)
<---------
TOE2(3)
<-----------
GT1
<XXXXXXXXXXXXXXXXXXX
MIR773B*
<----------
DOF2
<---------
AHL20(2)
<---------
YAB1
<---------
ZAT18
<---------
ANAC58
----------->
GT1
--------->
ATHB51
--------->
AHL20(2)
<---------
ANAC58
<---------
TOE1(3)
<---------
YAB1
<---------
AHL20(2)
<---------
ANAC46
<---------
TOE2(3)
<----------
DOF2
--------->
At4g35610
gaatccctcatggcttctatgagactgagattgaag
gtataaatttacaccctttattattgtgtttgctcaatttaatgccctttgttgtcacaaactt
1324100
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AGI:
At5g04600.1
Description:
RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G47120.1); similar to RNA binding protein-like protein [Solanum tuberosum] (GB:ABB87134.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 1323637
to: 1325628
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.