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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
--------->
AHL20(2)
<---------
At4g35610
--------->
TOE1(1)
--------->
YAB1
<---------
AHL20(2)
<---------
LBD16
<---------
AHL20(2)
<---------
YAB1
<---------
HSFB2a(2)
--------->
YAB1
<---------
AHL20(2)
--------->
HSFB2a(2)
<---------
YAB1
<---------
AHL20(2)
<----------
DOF2
------>
GLK1(2)
--------->
AHL20(1)
<---------
ANAC58
--------->
ANAC46
<----------
DOF2
------
GLK1(2)
<---------
AHL20(1)
<---------
ANAC58
--------->
ANAC58
---------->
ID1
attctcggactacattatatattatgatatatggttcttgtttattttttttaattgcag
gtaa
ctcgaatattgttttgtctttcttttagtgtattgt
198500
-------->
ATHB1
--------->
ATHB12
<---------
ICU4
--------->
GLK1(2)
<--
--------->
ATHB51
<---------
TOE2(3)
---
--------->
ICU4
<---------
AHL20(2)
<---------
ANAC55(2)
<---------
AHL20(2)
<---------
AHL20(2)
----------
<---------
ANAC55(2)
<---------
AHL20(1)
<------
ZmHOX2a(1)
--------->
ANAC55(2)
--------->
AHL20(1)
--------->
ANAC46
<----------
DOF2
<---------
ATHB51
<---------
AHL20(2)
<-----------
GT1
<---------
TOE2(3)
tgttttctttgattacatattta
gtttttgaattattgtgtaagtatatatatttttaagaatttgttttttacatcattttttataaggaatatgtaaa
198600
--------->
ANAC58
--------->
ANAC55(1)
--------->
YAB1
--------->
AHL20(2)
--------->
ANAC55(2)
<---------
AHL20(2)
--------->
ANAC58
--------->
AHL20(1)
--------->
ANAC46
<---------
AtLEC2
--------->
AHL20(2)
------
-------
AHL20(2)
--------->
ARR14(2)
<---------
AHL20(2)
<-----
------>
AHL20(2)
<---------
ARR14(2)
--------->
AHL20(2)
<-----
->
GT1
--------->
YAB1
<-----------
HVH21
<------
ZmHOX2a(1)
--------->
AHL20(2)
ttaaacgtaatagataattctaacataatcaaaccttgttcatacatgtcagaactgcatgtctatataggaatacaattaaattaaaactaaaaatata
198700
<---------
AHL20(2)
--------->
AHL20(2)
<---------
CCA1(1)
<---------
RVE1(1)
<---------
ARR14(2)
--------->
YAB1
<---------
AHL20(1)
<---------
ANAC55(2)
--------->
AHL20(2)
<---------
ANAC58
<---------
AHL20(2)
--------->
ANAC55(2)
--------->
AHL20(1)
<----
--->
AHL20(2)
<---------
ANAC58
<------
ZmHOX2a(1)
--------->
AHL20(2)
-------
----
AHL20(2)
<---------
YAB1
<---------
ARR11(3)
--------->
ATHB12
<--------
----
YAB1
<---------
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
---------
aatgccttctcatggaattttttgattcgtatcagaagatatttggcaggaatttattttcttagtgattaaaaaacaaaaaacaaatgttcgaagtatc
198800
------>
ZmHOX2a(2)
----------->
RAV1(2)
<------
ZmHOX2a(2)
--------->
ZAT2
<---------
ARR14(2)
<---------
ZAT2
--------->
ARR14(2)
<-----------
GT1
--------->
MYB52(1)
<---------
AHL20(2)
<---------
PCF2
<---------
MYB52(1)
-----
ANAC46
--------->
AHL20(2)
<---------
ANAC58
<------------
AtMYB77
-->
MYB52(1)
--------->
ZAT18
<---------
MYB52(1)
--------->
MYB52(1)
-
HSFC1(2)
<---------
ZAT18
<---------
YAB1
<----------
DOF2
<---------
ANAC55(2)
>
HSFC1(2)
--------->
PCF2
<----------
DOF2
<---------
ANAC58
--------->
ANAC55(2)
--
ggagaaggcccaactgagcccactagtttaaattgtactttgtgattcccttgggccttgtggatcccattaagtactaactgttatttacaagaatgcc
198900
--------->
ANAC58
--------->
ANAC58
--------->
LBD16
<---------
HSFB2a(2)
<---------
ANAC55(2)
<---------
AHL20(2)
--------->
HSFB2a(2)
--------->
YAB1
--------->
GLK1(2)
<---------
LBD16
<-----------
TBP
<---------
ARR11(3)
--------->
ARR14(2)
--------->
ANAC58
--------->
YAB1
--------->
GLK1(2)
--------->
ANAC58
*
TSS
--------->
RVE1(1)
<---------
ARR14(2)
============
--------->
At4g35610
------------>
CBF
--------->
AHL20(2)
<---------
GLK1(2)
------>
ZmHOX2a(1)
------->
ATHB12
--------->
AHL20(2)
<-----------
RAV1(1)
<-----------
RAV1(2)
--------->
TOE2(3)
atcatcggaggccatttataaattttggactcaattttgtt
gcaaataaaaatctgaaattctcaggcgagattccggaagcaaaacattcctaaatttc
199000
<---------
MYB52(1)
--------->
LBD16
--------->
TOE2(3)
--------->
LBD16
<---------
ANAC58
--------->
TOE1(3)
------>
NtERF2
--------->
ANAC55(2)
--------->
HSFC1(2)
--------->
ANAC46
<---------
ANAC46
<---------
HSFC1(2)
--------->
ANAC58
<---------
ANAC55(2)
--------->
ARR11(3)
<---------
HSFB2a(1)
--------->
ANAC58
<---------
ANAC58
<---------
ARR11(3)
------->
TEIL
------>
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ANAC58
<---------
ARR14(2)
--------->
O2
--------->
ARR14(2)
--------->
ANAC58
--------->
DEAR3(1)
=============
HOX2a_HOX2a
--------->
At4g35610
--------->
ANAC46
----------->
HVH21
<-
gccaagtgatccgcc
atgggagaagagaagtctctgcttcagttccgtagttttccttcactcaagacctctgatttcgctctcaccgaagaaccttcat
199100
<---------
ANAC58
<---------
ANAC58
<------
NtERF2
<---------
ANAC46
--------->
ARR14(2)
<------
NtERF2
--------->
LBD16
<------
NtERF2
<---------
DEAR3(1)
--------->
ANAC55(2)
<-----------
HVH21
<------
ZmHOX2a(1)
------>
NtERF2
<---------
ANAC58
------->
MYC3
--------->
LBD16
<---------
DEAR3(1)
<---------
ANAC58
<
<-------
MYC3
--------->
DEAR3(1)
--------->
ALFIN1
<---------
ANAC58
=======
--------->
O2
<---------
LBD16
---------->
DOF2
<-----------
GT1
<----------
DOF2
<------
ZmHOX2a(1)
--------
RAP2.6(2)
<---------
ANAC46
----------->
GT1
--------->
ALFIN1
<---------
ANAC58
=======
ggaggctggagaacaacgtgtcgtcgaatcgccggagaggaaacaagagaagcggtggcgtttttaccaattttgcgtccctttccgtagcgattaggag
199200
<---------
HSFB2a(1)
<---------
ANAC58
<---------
ANAC58
--------->
ATERF1(1)
<------
NtERF2
--------->
ALFIN1
<---------
DEAR3(1)
<------
NtERF2
--------->
ATERF1(1)
<---------
ATERF1(1)
--------->
ALFIN1
<---------
DEAR3(1)
--------->
ATERF1(1)
<------
NtERF2
<---------
DEAR3(1)
<---------
ANAC46
--------->
ALFIN1
<---------
ABI4(1)
<------
NtERF2
<---------
LBD16
--------->
ATERF1(1)
--------->
At4g35610
<---------
RAP2.3(1)
<---------
ERF1
<---------
SPL7
<---------
RRTF1(1)
<---------
ORA47(2)
<---------
ATERF1(1)
<---------
RAP2.6(1)
<---------
ATERF1(2)
<---------
RAP2.6(2)
--------->
ATERF1(2)
<---------
RAP2.3(2)
-
--------->
ARR14(2)
<---------
DREB2C(2)
-
<-----------
ARR10
<---------
RRTF1(3)
--------->
LBD16
-
--------->
GLK1(2)
<---------
RRTF1(2)
<---------
DEAR3(1)
<-
<---------
ARR14(2)
<---------
RAP2.3(3)
--------->
ALFIN1
---
<---------
GLK1(2)
<---------
ANAC46
<---------
AtMYB61
<--
------>
ZmHOX2a(2)
<---------
DEAR3(1)
<---------------------
WRI1
<---
------
ZmHOX2a(2)
------->
GAMYB
<---------
At4g35610
<---------
ARR14(2)
-----
======
HOX2a_HOX2a
<-----------
GT1
------>
NtERF2
--------->
HSFB2a(1)
<---------
MYB46(3)
--------->
ARR14(2)
=======
HOX2a_HOX2a
--------->
MYB52(1)
<---------
ATERF1(1)
--------->
ARR14(2)
<------
ZmHOX2a(1)
agatcggagagaatctacatttaacggtcgtaatggcggcggaggcggagcgttcgcatcggtttcggtggtgattccgaaggaagaggatgaattcgcg
199300
-----
<----
------
------
------
------
<------
NtERF2
-------
-------
-------
<-------
--------
------>
NtERF2
---------
---------
<--------
---------
--------->
ERF1
--------->
DEAR4(2)
--------->
RRTF1(1)
--------->
ATERF1(1)
--------->
RAP2.3(1)
--------->
MYB46(3)
--------->
RAP2.6(1)
--------->
ORA47(2)
--------->
DEAR3(2)
<------
NtERF2
<---------
ABI4(2)
<---------
RAP2.3(1)
<---------
ATERF1(1)
------>
NtERF2
------>
NtERF2
--------->
ABI4(2)
<------
NtERF2
<---------
At4g35610
--------->
ZAT14
--------->
At4g35610
--------->
LBD16
--------->
ARR14(2)
<---------
ZAT18
--------->
ATERF1(1)
--------->
DEAR3(1)
<---------
ATERF1(1)
--------->
RAP2.3(2)
--------->
LBD16
<---------
At4g35610
--------->
RAP2.6(2)
--------->
DEAR3(1)
--------->
At4g35610
--------->
RAP2.3(1)
<---------
LBD16
------>
NtERF2
--------->
ATERF1(1)
--------->
SPL7
-----
--------->
TOE1(1)
<------
NtERF2
<---------
SPL7
-------
----->
MYB83
<---------
MYB46(3)
<---------
RAP2.3(1)
<---------
ANAC58
------
------->
P
<---------
ZAT2
------>
NtERF2
--------->
HSFB2a(1)
----->
MYB46(1)
<---------
ATERF1(1)
<---------
ANAC58
------
--------
ALFIN1
<---------
ETT(2)
--------->
ANAC58
<---------
HSFB2a(1)
---
------>
DEAR3(1)
--------->
ETT(2)
--------->
ANAC46
<------
NtERF2
<---------
ARR14(2)
-------
MYB46(2)
<----------
DOF2
--------->
ANAC58
--------->
LBD16
--------->
ZAT2
---
NtERF2
--------->
ZAT2
<---------
ANAC58
<---------
DEAR3(1)
--------->
DEAR3(1)
---------
->
NtERF2
<-----------
RAV1(2)
<---------
ANAC58
---------->
DOF2
<---------
LBD16
<------
NtERF2
cctacctcggcccagctgttgaaaaaccccattgctttactgtcgatagtaccgaaagacgccgcactattcttcgccggagcgttcgccggagccgccg
199400
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AGI:
At5g01490.1
Description:
CAX4 (cation exchanger 4); cation:cation antiporter. Identical to Vacuolar cation/proton exchanger 4 (CAX4) [Arabidopsis Thaliana] (GB:Q945S5;GB:Q9M025); similar to CAX3 (cation exchanger 3), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT3G51860.1); similar to CAX [Suaeda maritima subsp. salsa] (GB:AAR99078.1); contains InterPro domain Calcium/proton exchanger superfamily (InterPro:IPR004798); contains InterPro domain Calcium/proton exchanger; (InterPro:IPR004713); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837)
Range:
from: 195540
to: 198523
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At5g01500.1
Description:
mitochondrial substrate carrier family protein. Identical to Thylakoid ADP,ATP carrier protein, chloroplast precursor (TAAC) [Arabidopsis Thaliana] (GB:Q9M024;GB:Q8LCT8); similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT3G51870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15815.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067)
Range:
from: 198942
to: 201551
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.