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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
CCA1(1)
-------
<---------
RVE1(1)
------->
MYC3
<------
<---------
AHL20(2)
--------->
ANAC46
<---------
YAB1
<--------
------->
AHL20(1)
--------->
ANAC58
--------->
AHL20(2)
=========
--------
AHL20(1)
--------->
ANAC58
--------->
AHL20(1)
<----------
DOF2
------->
AHL20(2)
--------->
MYB46(3)
--------->
AHL20(1)
------>
ZmHOX2a(1)
-------
AHL20(2)
----------->
RAV1(2)
----------->
GT1
<---------
AHL20(1)
--------->
GLK1(2)
----
AHL20(2)
<---------
At5g28300
<-------
MYC3
--------->
AHL20(2)
<---------
ARR14(2)
----
ICU4
--------->
ARR11(3)
--------->
AtMYB61
----------->
GT1
--------->
ARR14(2)
-
-->
AHL20(2)
<-----------
GT1
----------------->
AGL2
<---------
AHL20(2)
<---------
GLK1(2)
=======
>
YAB1
<---------
ARR11(3)
<---------
ALFIN1
<---------
ZAT6
<---------
GLK1(2)
--------->
ZAT6
atattttagtgggatatttcacagcctgaaccactccatatgcagaaaatagtgtttgtaaaatattatagattcttcagaatcctctttttaagactaa
17504200
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
ZAT14
--------->
ICU4
--------->
ZAT14
----------------->
AGL1
--------->
AHL20(1)
--------->
ARR11(3)
----------------->
AG
<---------
ARR11(3)
--------->
ARR14(2)
----------------->
AGL1
--------->
ARR11(3)
<---------
ARR14(2)
<-----------------
AGL1
-------->
AGL15
--------->
GLK1(2)
<-----------
GT1
---------
AGL15
---------->
TaMYB80
--------->
ZAT18
--------->
AHL20(2)
----
---------
AG
<------
ZmHOX2a(1)
--------->
YAB1
<---------
AHL20(2)
----
====================================================================================================
---------->
GT1
<------
ZmHOX2a(1)
<---------
GLK1(2)
<---------
ZAT18
--------->
AHL20(2)
-----------
====================================================================================================
tttgggaaaatattaaatacaggataacaggaatatgagaatcttgaatgagaagagcactaaaaacaaaataaataacaagtttcccaaaactgaaaat
17504300
-
<
==
<-
--
--
<---------
AHL20(2)
<-
--------->
AHL20(2)
==
--------->
ICU4
<-
<---------
YAB1
<-
--------->
AHL20(2)
--------->
TOE2(3)
<-
<---------
AHL20(2)
--------->
TOE1(3)
---
--------->
AHL20(2)
<---------
ARR11(3)
---
<---------
AHL20(2)
--------->
ARR11(3)
----
--------->
AHL20(1)
--------->
RVE1(1)
<----
<---------
AHL20(1)
<----------
ID1
<-----------
GT1
----->
YAB1
----------->
GT1
--------->
AHL20(2)
<-----
------->
GT1
---------->
DOF2
------>
ZmHOX2a(1)
<---------
AHL20(1)
<---------
GLK1(2)
MADS_MADS
--------->
AHL20(2)
--------->
AHL20(1)
<---------
ARR14(2)
>
GT1
<---------
YAB1
<---------
AHL20(2)
>>>>>>>>>>
GT-3b
--------->
AHL20(2)
<---------
ZAT6
<--
MADS_MADS
<---------
AHL20(2)
---------->
DOF2
---------->
DOF2
--------->
AHL20(2)
--------->
ARR14(2)
tgtaatataattaatagccgaattaaaaggaaaaaaatccttaaagaaaaatataaaaaaagagaagaataaatatatataagtgagtgtaacgattcgc
17504400
--------->
SPL7
--------->
ZAT14
<---------
ZAT14
<---------
SPL7
<------------------
SPL14
------>
MYC3
-------
MYC3
=============================
bZIP_DOF
--------
O2
------->
O2
------->
TGA1a
--------
TGA1a
=============================
bZIP_DOF
---------->
DOF2
--------
ANAC58
<---------
AHL20(2)
--------
ANAC58
--------->
AHL20(2)
--------
ANAC46
<---------------
AGL15
--->
NtERF2
----------------->
AGL3
<---------
ICU4
------>
LBD16
--------->
GLK1(2)
<------------
CBF
----->
DEAR3(1)
--------->
ARR11(3)
<---------
AHL20(2)
<---
-----
LBD16
<---------
ARR11(3)
--------->
YAB1
<------
----
At5g28300
<---------
GLK1(2)
<---------
TOE2(3)
<---------
YAB1
<-------
----
NtERF2
---------->
DOF2
--------------->
AGL15
--------->
AHL20(2)
<---------
ALFIN1
cgcgtgtgtacgggcatcacaaaaagattctttcttccatttaaagataaatctaattttaatattgacaaaaacaccctcaagtctccacttatttaca
17504500
--------->
DEAR3(1)
<---------
At5g28300
--------->
ZAT14
<-------
TEIL
<-----------
HVH21
--------->
ARR14(2)
<---------
ARR14(2)
<<<<<<<<<
TBF1
------
At4g35610
<XXXXXXXXXXXXXXXXXXXX
MIR854A-E
*
TSS
<---------
ARR11(3)
---
At5g28300
------>
ZmHOX2a(1)
---------->
ID1
<---------
At4g35610
----
GT1
<---------
ZAT14
<<<<<<<<<
TBF1
<---------
AHL20(2)
<-----------
GT1
<---
gcggctacggttcaccgcgtccttcttcttcttccctaatctcattttttttttgtt
ctcatttatcttcttcagcatcttcatcatcttcttctatata
17504600
---------->
ID1
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
<---------
TOE2(3)
<---------
TOE1(3)
<----------
DOF2
<------
ZmHOX2a(1)
<----------
DOF2
<----------
DOF2
<---------
MYB46(3)
<------
ZmHOX2a(2)
--------
GT1
<---------
ANAC58
<---------
MYB52(1)
=============
HOX2a_HOX2a
<---
tacctctttaagcttgcttctctttgtctttatcttgtccg
atggttcaaacagaaaccgatcaaaggatgggtcttaatctgaatttgtctatctactc
17504700
-------->
ATHB1
<---------
ICU4
<------
ZmHOX2a(2)
<---------
HSFB2a(2)
--------->
YAB1
<---------
ANAC46
--------->
HSFB2a(2)
---------->
DOF2
--------->
ETT(1)
<---------
CCA1(2)
<------
ZmHOX2a(1)
<-----------
RAV1(1)
<---------
MYB52(1)
<---------
ANAC46
<---------
ATHB12
<-------
GAMYB
-------
DOF2
--------->
TOE2(3)
--------->
ALFIN1
--------->
WOX13(1)
<---------
MYB46(3)
<---
tttaccaaaacccttatctcaatttctcgatgaagtgtcgaggatcaaagacaatcattccaaactgtctgaaatcgatggttatgtcggaaaattagag
17504800
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
YAB1
<---------
YAB1
<---------
YAB1
<---------
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
<
<----------
ID1
<---------
DAG2
<----------
DOF2
<-------
---------->
DOF2
--------->
GLK1(1)
--------->
ARR11(3)
<----------
DOF2
---
ZmHOX2a(1)
<---------
GLK1(1)
<---------
YAB1
<---------
ARR11(3)
<--------------
gaagaaaggaacaaaatcgatgtttttaaacgagaactccctttatgcatgctcttattgaacgaag
gtatcttttattaaaattctctccttttctttt
17504900
<-------
GAMYB
<---------
DEAR3(1)
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
--------->
ALFIN1
<-----------
GT1
<---------
ANAC46
--------->
ATHB12
------
-----------
GT1
<---------
ANAC58
--------->
ZAT14
---------->
DOF2
---
DOF2
<---------
ANAC58
<---------
ZAT14
<------
ZmHOX2a(1)
<------
----------
ANAC81
<-------
TEIL
---------->
DOF2
--------->
REM1(2)
<---------
TOE2(3)
----------->
GT1
ttttatcttctctaatcgattcgtgtttttgtttaaagagattgtttttctctgtgtag
cgattggggcgttgaaggatgaggctagaaaagggttatca
17505000
-----
<---------
HSFB2a(2)
<---------
AGP1
--------->
ARR11(3)
--------->
ARR14(2)
------->
TEIL
<---------
ARR11(3)
----------------->
AGL3
<-----------------
AGL2
--------->
ARR14(2)
----------------->
AGL2
--------->
LBD16
<-----------------
AGL1
<---------
LBD16
--------->
At4g35610
--------->
HSFB2a(2)
--------->
GLK1(1)
--------->
ARR14(2)
--------->
At4g35610
--------->
ARR14(2)
<---------
At4g35610
---------->
DOF2
<---------
ARR14(2)
----------->
ARR10
<---------
ARR14(2)
--->
ZAT6
<---------
HSFB2a(1)
<---------
ARR14(2)
--------->
ZAT2
------>
NtERF2
------>
ZmHOX2a(2)
---
YAB1
<---------
GLK1(1)
----------->
GT1
--------->
ARR11(3)
<---------
ARR14(2)
ctgatggcatctaatgggaaattcgatgatgttgaaagggcaaaaccggaaactgataagaagagctggatgagctctgcccagttatggatctcgaacc
17505100
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AGI:
At4g37180.1
Description:
myb family transcription factor. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT2G03500.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83122.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447)
Range:
from: 17504558
to: 17506361
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.