Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->ATERF1(1)                                                                                      --------->ERF1                                                                                     --------->ABI4(1)                                                                                     ------>NtERF2                                                                                     <---------ATERF1(1)                                                                                    --------->ANAC58                                                                                    <---------ATERF1(2)                                                                                    --------->DEAR3(1)                                                                                    --------->ANAC58                                                                                    --------->ANAC46                                                                                    --------->ATERF1(2)                                                                                    --------->RAP2.6(2)                                                                                    --------->RRTF1(3)                                                                                    --------->RRTF1(2)                                                                                    --------->DREB2C(2)                                                                                    --------->RAP2.3(3)                                                                                    --------->RAP2.3(2)                                                                                   --------->ORA47(2)                                                                                   --------->DEAR4(2)                                                                                   --------->ERF1                                                                                   --------->RRTF1(1)                                                                                   --------->RAP2.6(1)                                                                                   <------NtERF2                                                                                   --------->ATERF1(1)                                                                                   --------->RAP2.3(1)                                                                                  ------>NtERF2                                                                                  --------->At4g35610                                                                                  <---------At4g35610                                                                                  --------->ABI4(1)                                                                                  <---------RAP2.3(1)                                                                                  <---------DREB2C(1)                                                                                  <---------DEAR4(2)                                                                                  <---------ATERF1(1)                                                                                 <---------ATERF1(2)                                                                                 <---------DEAR3(1)                                                                                 --------->RRTF1(2)                                                                                 --------->DEAR3(1)                                                                                 --------->RAP2.3(2)                                                                                 --------->RAP2.3(3)                                                                                 --------->ANAC46                                                                                 <---------ALFIN1                                                                                 --------->ATERF1(2)                                                                                 --------->RRTF1(3)                                                                                 --------->RAP2.6(2)                                                                                --------->RAP2.3(1)                                                                                --------->ORA47(2)                                                                           --------->AtMYB61                                                                           <---------ALFIN1                                                                        --------->AtMYB61                                                                        <---------ALFIN1                                                                    --------->WRKY38(1)--------->DEAR3(1)                                                                    <-------TEIL--------->ATERF1(1)                                                              ------>ZmHOX2a(2) --------->RAP2.6(1)                                                             <------ZmHOX2a(2)  --------->RRTF1(1)                                                             --------->CCA1(2) <---------At4g35610                                                            <---------ARR14(2) ------>NtERF2                                                            --------->AGP1 --------->DEAR3(1)                                                            <---------AGP1--------->ZAT2------>NtERF2                                                            <---------ARR11(3) --------->ABI4(1)                                                          <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         --------->HSFB2a(2)   --------->LBD16                                                         <---------HSFB2a(2)  --------->ANAC46                                                       ==============HOX2a_HOX2a--------->ERF1                                                    ------>ZmHOX2a(1)  --------->MYB46(3)                                          ------->GAMYB=============HOX2a_HOX2a<---------ATERF1(1) ----------->AtSPL3                      <---------MYB111(2)--------->ARR11(3)<---------ALFIN1 --ZAT2                                  <------------MYB.PH3(2)   --------->DOF5.7(2)<------NtERF2 ->At4g35610                             --------->MYB46(3) --------->ARR14(2)--------->DEAR3(1) --At4g35610     ----------->HVH21     <-----------GT1 ------>ZmHOX2a(1)--------->DEAR3(1)--------->AtMYB61 --->RAV1(2)   <---------O2         ----------->GT1 =================HOX2a_HOX2a--------->DEAR4(2) ->ZAT2        --------->O2         --------->YAB1  ================HOX2a_HOX2a--------->At4g35610  -   aagtacaatccctagcgaagtgaccagtatcaccacaattgtaacaaccttctcctcctctagatctacgttcaccacctccgccgccgccaccaatacc  17044000                                                            <------NtERF2                                                         <------NtERF2                                                         --------->LBD16                                                         ------>NtERF2                                                        --------->DEAR3(1)                                                        <---------ALFIN1                                                        <---------ATERF1(1)                                                       <------NtERF2                                                       <---------DEAR3(1)                                                      --------->ABI4(1)                                                      <---------ATERF1(1)                                                      ------>NtERF2                                                     <---------ALFIN1                                                     --------->DEAR3(1)                                                     <---------DEAR3(1)                                                     --------->ANAC46                                                     <---------ATERF1(2)                                                     --------->ATERF1(2)                                                     --------->RRTF1(3)                                                     --------->RRTF1(2)                                                     --------->RAP2.3(3)                                                     --------->RAP2.6(2)                                                     --------->RAP2.3(2)                                                    --------->ORA47(2)                                                    --------->ERF1                                                    --------->DEAR4(2)                                                    --------->RRTF1(1)                                                    --------->ATERF1(1)                                                    --------->RAP2.6(1)                                                    --------->RAP2.3(1)                                                   ------>NtERF2                                                   <---------ATERF1(1)                                                   --------->ABI4(1)                                                  --------->DREB2C(2)                           --------->LBD16        --------->DEAR3(1)                          --------->ANAC46        --------->ANAC46                        <---------At5g28300       <---------ALFIN1                   ------>MYB83                   ------->GAMYB                 <---------MYB59                  --------->AtMYB61             ----------->HVH21           ------->GAMYB<---------RAP2.3(1)           --------->CCA1(2)            --------->MYB46(3) ------>NtERF2               <-----------GT1          --------->ARR11(3)    <---------REM1(1)--------->MYB46(3)         --------->O2          <---------ARR11(3)    --------->YAB1 <---------ALFIN1       --------->DOF5.7(2)   <----------DOF2 ------>MYB46(1)     -------->P--------->DEAR3(2)   <---------MYB52(1)   ------>ZmHOX2a(1) -------->GLK1(2)<---------MYB46(2)  --------->MYB46(3)--------->ATERF1(1)  --------->ANAC46   acaatctttagagatatgacctaactcaccgcaattgtagcaaccgcttccaccgccgccgcgcctagcaccgttaccacgagagttattctccttcttg  17044100                                                                                       <-------GAMYB                                                                                      <---------MYB46(3)                                                                                   ------------>AtMYB77                                                                                   ------>NtERF2                  --------->At5g28300                                             --------->DEAR3(1)                 ----------->GT1                                                  --------->At1g77200               --------->At4g35610                                             --------->DEAR3(1)             <------ZmHOX2a(1)                                            --------->RAP2.6(2)          <-----------RAV1(2)        <---------ZAT6                       ------->GAMYB--------->At5g28300        ----------->RAV1(1)     <----------DOF2                          --------->MYB46(3)       <--       <---------ALFIN1      ------>NtERF2   <---------MYB52(1)     --------->ANAC58  ----------->GT1       --------->AtMYB61    <---------RAP2.6(2)       --------->LBD16  --------->MYB52(1)      <-----      --------->MYB46(3)   --------->RAP2.6(3) <---------DEAR3(2)   --------->ANAC58<------NtERF2----    --------->AtMYB61    ----------->HVH21  <-----------HVH21    --------->ZAT18  ----------->HVH21   --------->MYB46(3)    --------->WRKY12<---------At5g28300     <---------ZAT18 --------->RAP2.3(1)   agagaaccaccaccaggagcagtaacattgacggctttagtcttaccgtcgcttccctgagtaatagcgaactcaaccgcatcgccgacggttaaactcc  17044200                                           <---------At4g35610                                           --------->At4g35610                                          --------->ANAC46                                         <---------ZAT14                                  --------->DAG2      <-----------RAV1(2)                        <---     <---------LBD16          --------->ANAC58      <-----------TGA1                            <----  <---------HSFB2a(1)         --------->ANAC58------>NtERF2                                     <---- -------MYB52(1)             <---------------------WRI1              --------->TOE2(3) --------->WRKY38(1) ----LBD16            <---------WOX13(1) --------->ZAT14 <------ZmHOX2a(1)  <----------DOF2     ----- ----->LBD16       <---------YAB1---------->DOF2    <-----------HVH21--------->TOE1(3) --------->WRKY12   ggtaaccttcggagacaattgaagattgatgaacgaaaagctctacgctgccatcgtcaggagtaatgaaaccatagcctttagaagcgttgaaccagtt  17044300                   --------->ABI4(1)                   ------>NtERF2                   <---------ATERF1(1)                  --------->DEAR3(1)                  <---------ATERF1(2)                  --------->ATERF1(2)                  <---------DEAR3(1)                  --------->RAP2.3(3)                 --------->RAP2.3(1)                 --------->ATERF1(1)                 --------->DEAR4(2)             ------>ZmHOX2a(2)             =========================HOX2a_HOX2a           <---------ARR11(3)           <---------ARR14(2)           --------->ARR14(2)          <---------CCA1(2)        <--------P--------->RAP2.3(2)       <---------MYB52(1)      --------->LBD16   <---------WOX13(1) --------->TOE1(3)     --------->LBD16<------NtERF2          --------->TOE2(3)    <---------LBD16--------->LBD16        ----------->GT1  -------->P<------ZmHOX2a(2)       --------->ANAC58  ------>MYB46(1)--------->ERF1------>ZmHOX2a(1)  ------>MYB83  <---------ATERF1(1) --------->ANAC58 --------GT1==========================HOX2a_HOX2a                                                  *TSS -----ZAT18--------->ARR11(3)  ----------->RAV1(2)                                                 <- -----ZAT14<---------AGP1      --------->At4g35610    --------->DAG2            <---------TOE2(3) <-- ---->ZAT14<-----------ARR10 ------>ZmHOX2a(2)       ---------->DOF2            <---------TOE1(3) ---   caccttcccggtagatctcgccgccgattgatcctctgaagccatcgttaaaaaaaaaagttgaagaagagattgagaaattagggttttttaagttggg  17044400            --------->ALFIN1          --------->ALFIN1        <---------ANAC58       <---------TOE2(3)        <---------ANAC58<-----------TBP            ----------->GT1        <---------ANAC46--------->AHL20(2)    <---------AHL20(2)    --------->AHL20(2)   ------>ZmHOX2a(1)    <---------AHL20(2)   --------->AHL20(2)     <---------AHL20(2)  --------->TOE2(3)   --------->AHL20(2)  ----------->GT1      <------ZmHOX2a(1) --------ARR14(2)     <-----------TBP  --------->ALFIN1       ----------->GT1   --------->TOE1(3) -------GLK1(1)       <---------AHL20(2) <XXXXXXXXXXXXXXXXXXXXMIR1886.3         --------->TOE2(3) ------>GLK1(1)     <-----------TBP  <---------ANAC46   --------->ICU4  --------->YAB1            ---   aaatccttaggcgtgtgtgtgtatatatatatagaggtagagtgggattaaatctgtaattaagaggaaattaatgagaaaaccctaattttagtgggga  17044500                                                  <----------TaMYB80                                                  <---------KAN4(1)                                                  <---------HSFB2a(1)                                                  --------->HSFB2a(1)                        <-------         --------->TOE1(3)       <---------AHL20(2)    <----------DOF2                       ========         --------->TOE2(3) <------NtERF2          --------->KAN4(1)                       <----------      <-----------GT1     ------>NtERF2   <---------AtMYB61     ----------->GT1<---------HSFC1(2)    --------->AHL20(2)   --------->DEAR3(1)      <---------KAN4(2)             --------->HSFC1(2)    <---------AHL20(2)   --------->RAP2.6(2)     ---------->TaMYB80         <------ZmHOX2a(1)-------- -------->GT1    >>>>>>>>>>WRKY63--------->AHL20(2)--------->KAN4(2)      <---------TOE2(3)  <-------   atgtaattaaaccctaatttgactatgccgcctaattaaaaattttggtggaatattctttgggactggagaaatttaggaaacttgctatttcactttt  17044600                                    --------->ANAC58                                    --------->ANAC46                                 <---------WRKY12                             <-------MYC3               xxxxxxxxxxxxxxxx>smallRNA(s)             <---------MYB52(1)<-----------HVH21           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <-------TEIL       <-------MYC2                      <---------MYB52(1)        <-------PIF5         ------->MYC3                    --------->ANAC58       --------->ANAC58      ------->MYC2                    --------->ANAC58       --------->ANAC46     --------->ANAC58                <---------TOE1(2)       --------->bZIP60(2)  --------->ANAC58                <---------TOE2(2)       <---------TGA1a      --------->ANAC46              <---------SPL7       --------->TGA1a   --------->ZAT14                <---------------AtSPL3                      -  <-----------GT1   <---------ZAT2  --------->ANAC58    --------------->AtSPL3                      - --DAG2--------->O2 <---------At4g35610         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                < ================bZIP_DOF<---------ZAT14      <---------AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -GT1  --------->ANAC58  <---------ZAT18      --------->AHL20(2)  <---------YAB1            <-------- ------------->WRI1 --------->ZAT2<---------ALFIN1 --------->YAB1 --------->ICU4            <-------- ---DOF2------->PIF5--------->At4g35610      --------->YAB1 --------->SPL7     --------->At5g28300  <   tttttatccacgtccgtttatcagctgtgcacgcgtccacgcttgaattttaatcgtggtcgtacgttatgattttcttacagtgaatcgcgataagatt  17044700                <-----------GT1  ------>ZmHOX2a(2) <------ZmHOX2a(2) -------->ARR11(3)                            <---------RVE1(1) -------->ARR14(2)                           --------->ARR11(3)                                 ----- ---------ARR11(3)                           <---------GLK1(2)                       <----------DOF2 -YAB1          <<<<<<<<<<<<<<<<<LFY         <---------ARR11(3)      xxxxxxxxxxxxxxxx>smallRNA(i)   < -TOE2(3)    <---------ICU4     <---------ANAC58                   --------->At4g35610          <---- ---------ARR14(2)              <---------ANAC58  <-----------GT1  <---------At4g35610          <----   gggatcttagtccaatttttacattgggccaattgtttgtggtccaagatttttactctgatgggcttaagctggacttggtatggccttttttatattt  17044800              <------MYB83           <---------At4g35610         <---------RAP2.6(2)       --------->ARR14(2)      <---------ARR14(2)      --------->ARR14(2)      <---------GLK1(2)    --------->LBD16  ----------------->AGL1                   <---------AHL20(1)  <-----------------AGL1                   --------->AHL20(2)                               <--------  <---------LBD16                          <---------AHL20(2)                            <---------YAB1  <-----------------AG                    <---------AHL20(2)                         <---------ANAC58 ---->AHL20(2)<---------MYB46(3)          --------->AHL20(2)                         <---------ANAC58 -----------GT1            <---------ATHB12--------->AHL20(1)                        <---------ANAC46 -----AHL20(1)<------MYB46(1)      --------->WOX13(1)        <-----------RAV1(2)<----------DOF2 -----AHL20(2)----------->GT1   <---------ARR11(3)  <----------DOF2           <---------At4g35610   tatttcccgattcggctggttactactaaatcaatatccatcaaataaattgtacttttagcttcaggctatggtattgcagcttttgcttatgcttttc  17044900  Previous    Next  AGI:  At4g36020.1    Description:  CSDP1 (COLD SHOCK DOMAIN PROTEIN 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding. similar to cold-shock DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT2G17870.1); similar to universal minicircle sequence binding protein (UMSBP) [Leishmania infantum] (GB:XP_001469754.1); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Zinc finger, CCHC retroviral-type; (InterPro:IPR013084); contains InterPro Range:  from: 17043115    to: 17044399    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.