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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<
<---------
ANAC55(2)
<--
--------->
ANAC55(2)
--------->
TOE1(3)
---
<-------
TEIL
--------->
LBD16
--------->
TOE2(3)
<---
<-------
TEIL
----------->
GT1
--------->
GLK1(1)
<----------
DOF2
<---
aacatacagaaatacatatcaagaccagttacaaaacatcagaaacccagaacaaaacttgaaggaacatacaactttaaaaaactgaaacagagaccaa
15178400
--------->
DAG2
---------->
DOF2
<-------
GAMYB
<---------
ANAC58
----------------->
AGL1
---------
YAB1
<---------
ANAC58
--
-------
ICU4
<---------
ANAC46
<---------
AtMYB61
------>
YAB1
<---------
At4g35610
----------->
RAV1(2)
<----
------
ATHB12
--------->
At4g35610
--------->
TOE2(3)
--------->
ALFIN1
------
ATHB51
<-----------
RAV1(2)
----------->
GT1
--------->
MYB52(1)
----------
ttataacagggtttacagacgatgaactgtctcagatggcctgttgagaaaagtaataaacaaaacttaacatac
ctgataccagagagatggtggtata
15178500
--------->
CCA1(2)
------>
ZmHOX2a(1)
<---------
YAB1
<---------
TOE2(1)
--------->
TOE2(3)
--------->
CCA1(2)
--------->
ANAC46
<---------
YAB1
------->
TOE2(3)
<-----------
GT1
<---------
ICU4
<
-------
GT1
<------
ZmHOX2a(1)
<-----------
GT1
<---------
TOE2(2)
<---------
TOE2(3)
->
GT1
<---------
TOE1(1)
----------->
GT1
<---------
ALFIN1
--------->
YAB1
<-
acctttgatacgaggaaactataccgaaacaagtttcaatacagagtagattgtaacaaaatttccacacaggtttaatccttattgatgatatgcctct
15178600
----------->
GT1
--------->
DAG2
------------------------>
ANAC81
<---------
AHL20(2)
----------->
GT1
--------->
DAG2
--------->
AHL20(2)
--------->
CCA1(2)
<---------
TOE2(3)
---------->
DOF2
----------->
GT1
--------->
ARR11(3)
<---------
YAB1
--------->
ANAC46
--------->
ANAC58
<---------
ARR11(3)
---------
MYB52(1)
--------->
ANAC58
--------->
ANAC58
---------->
DOF2
<-----
------
GAMYB
--------->
ANAC58
<----------
ID1
----------->
GT1
--------->
TOE2(3)
cggttgattaagcttgtaaattccaagaaaaggggataaatgaaatcacatggggacaaggaaatataaatagaaaaaaaaaagatataaacttaaactt
15178700
<-----------
GT1
--------->
KAN4(2)
<---------
KAN4(1)
<----------
TaMYB80
---------->
DOF2
------>
ZmHOX2a(1)
--------->
TOE2(3)
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ANAC58
<---------
ARR14(2)
--------->
ANAC58
<--
----------->
GT1
--------->
TOE1(3)
*
TSS
------------>
CBF
<--
---------->
DOF2
--------->
ARR11(3)
<------
MYB46(1)
<---------
--------->
ANAC58
--------->
CCA1(1)
<------
MYB83
>>>>>>>>>
RAP2.2
-
--------->
ANAC58
--------->
RVE1(1)
<---------
REM1(2)
<---------
ARR11(3)
------------------------>
ANAC81
--------->
KAN4(1)
--------->
MYB59
--------->
ANAC58
<----------
ID1
--------->
YAB1
<---------
KAN4(2)
<---------
MYB52(1)
---------->
DOF2
-----
DOF2
---------->
DOF2
--------->
WOX13(1)
---------->
TaMYB80
--------->
MYB46(2)
--------->
ANAC58
tattgaagtctctctcaaaagaacaagtaaaagtaaatcaaaatatcctcaaagaatataccatctacaaggtt
aggttacccaatatctaaagcaacaa
15178800
--------->
ANAC46
<---------
ALFIN1
<
<---------
ANAC58
--------->
ANAC58
-
<---------
ANAC58
--------->
ANAC58
<----
<---------
AHL20(2)
--------->
TOE2(3)
--------->
DAG2
--------->
ANAC46
--------->
ARR11(3)
-------
ANAC58
<---------
AHL20(2)
--------->
ZAT6
--------->
ANAC55(2)
<----
-------
ANAC58
<---------
AHL20(2)
--------->
ZAT14
--------->
ZAT18
<---------
ARR11(3)
-
ID1
--------->
AHL20(2)
<---------
CCA1(2)
---------->
DOF2
<---------
ANAC55(2)
<---------
---------->
GT1
--------->
AHL20(2)
<---------
ZAT14
<---------
ZAT18
---------->
DOF2
<----
gcttgtgaaaaccattaattttatattcttgcttatctcaacactgcatcagaaagtggacaagttgaatacgaaatggacataaaagacattcttttgc
15178900
<-----------
GT1
<---------
ICU4
<---------
YAB1
---------
HSFB2a(2)
--------->
AHL20(2)
-------->
HSFB2a(2)
<---------
AHL20(2)
----------->
GT1
-----
ANAC58
--------->
ANAC58
----------->
GT1
-----
ANAC46
--------->
ANAC46
--------->
DAG2
---------->
DOF2
-
DOF2
---------->
DOF2
--------->
AHL20(2)
---------->
DOF2
<----------
ID1
-----
ANAC58
--------->
ANAC58
--------->
At4g35610
---------->
DOF2
<-----
gtctagatgataccaaagtatggcacgaaa
ttaatattcacaaaatggggaaatagctgaaaagtgaaaaaatcaacaaaagaacaaaagcttgaagctt
15179000
--------->
ZAT6
----------->
GT1
--------->
ARR14(2)
--------->
DAG2
<---------
ARR14(2)
--------->
AHL20(2)
<---------
YAB1
--------->
YAB1
--------->
YAB1
--------->
ICU4
<---------
ATHB12
------------>
CBF
----------->
GT1
--
--------->
WOX13(1)
<-----------
GT1
---------->
DOF2
------>
MYB46(1)
-----
DOF2
<---------
CCA1(2)
----------->
GT1
--------->
AHL20(2)
--------->
AHL20(2)
------>
MYB83
tactcatcaatcatatctgttaaaactagggggaaaaaaactgaatgcgaataaataaccctggcaataaaaaataaaaagtaattctcattacctacaa
15179100
--------->
ANAC58
------->
TEIL
--------->
ANAC58
<---------
ZAT6
<----------
DOF2
--------->
ANAC58
<---------
TOE2(3)
--------->
ZAT6
--------->
ANAC46
--------->
ANAC58
--------->
ARR11(3)
--------->
YAB1
<-------
TEIL
-------->
DOF2
--------->
MYB46(3)
*
TSS
--------->
At4g35610
---------->
DOF2
--------->
CCA1(2)
acaaagacacgaacttgatcaacaaatatcaaggaaa
cgagaattagatgaagaataagactagtggaaagaccagagagagatacaggcctttcaatgg
15179200
<------
ZmHOX2a(2)
<---------
O2
--------->
TGA1a
--------->
ANAC55(1)
<---------
ANAC55(2)
--------->
O2
--------->
ANAC58
--------->
ANAC55(2)
<---------
TGA1a
<---------
ALFIN1
--------->
ARR11(3)
--------->
ANAC58
--------->
YAB1
<---------
ANAC46
<--------
------>
ZmHOX2a(1)
--------->
ZAT6
<---------
ARR11(3)
<---------
GLK1(1)
--------->
AtMYB61
--------->
ARR11(3)
--------->
GLK1(1)
--------->
YAB1
<-----------------------
TaNAC69(2)
<---------
ANAC55(2)
<-----------
HVH21
<---------
YAB1
<-----------
HVH21
--------->
ZAT6
<--
aagcta
ttacatgagtgagaactcctcagtcatagctcttgaagaacgatgatcaccatcactagcagtcacgtatgaagatcgaacactctcttgacct
15179300
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Next
AGI:
At4g31240.1
Description:
electron carrier. similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G60420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43974.1); contains InterPro domain C1-like (InterPro:IPR011424); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594); contains InterPro domain Thioredoxin fold (InterPro:IPR012335)
Range:
from: 15176461
to: 15178774
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g31250.1
Description:
leucine-rich repeat transmembrane protein kinase, putative. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G20190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43973.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Tyrosine protein kin
Range:
from: 15178931
to: 15181757
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g31248.1
Description:
other RNA
Range:
from: 15179138
to: 15180809
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.