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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ZAT2
--------->
ARR14(2)
<----------
DOF2
--------->
ATHB12
--------->
At4g35610
--------->
ARR11(3)
<---------
ANAC58
--------->
ZAT2
<---------
ARR14(2)
<---------
ARR11(3)
<---------
ANAC58
<---------
At4g35610
-------->
ANAC58
<---------
YAB1
--------->
HSFC1(2)
-------->
ANAC58
<---------
AHL20(2)
<---------
HSFB2a(1)
-----
ID1
<----------
DOF2
<---------
HSFC1(2)
----------
-->
DOF2
<-----------
GT1
<---------
YAB1
--------->
HSFB2a(1)
---
acaagaactttgctcaaaaattcactctttttattgcttatcattgaatacttctattgaaactagataactcgaagctcccatttccaaatcccctgta
15059400
<---------
ZAT2
--------->
ANAC58
--------->
At4g35610
--------->
TOE1(2)
<------
ZmHOX2a(1)
--------->
ANAC58
---------->
DOF2
<-----------
RAV1(2)
--------->
At4g35610
-----
->
RAV1(2)
<------
ZmHOX2a(1)
<---------------------
WRI1
--------->
At4g35610
<------
ZmHOX2a(1)
------>
ICU4
---------->
DOF2
<------
ZmHOX2a(1)
<---------
LBD16
--------->
At4g35610
<------
ZmHOX2a(1)
attagtttgagaaaaaaaagaggagttttgaggagaaaggagaagagtac
caggagaaacacgagcagaagaagcagcaagcttaggaaccctaggaaga
15059500
--------->
TCP20
--------->
TCP15(1)
--------->
TCP11(2)
--------->
ZAT18
--------->
TCP16(1)
<---------
PCF2
--------->
PCF5
----------->
TCP11(1)
<---------
ICU4
<---------
TCP23
--------->
ICU4
--------->
ALFIN1
<-------
TEIL
--------->
CCA1(2)
<-----------
RAV1(1)
<----------
ID1
--------->
At4g35610
-----------
---->
ARR11(3)
---------->
DOF2
<---------
YAB1
--------->
ANAC46
----------->
GT1
cattgctgtgggcc
ctgagaaaccaatagcaaagaaacaaattcattatgggaaactcatccaagtagcagagatgggcaatagacaagagttggaaaaa
15059600
<------
ZmHOX2a(1)
--------->
ANAC58
<---------
TOE2(3)
--------->
ANAC58
--------->
ANAC58
--------->
REM1(2)
<---------
HSFB2a(2)
<----------
DOF2
----------->
HVH21
--------->
HSFB2a(2)
--------------->
AGL15
<---------
ANAC46
<---------
HSFC1(1)
<-----------------
AGL3
<---------
ANAC58
<---------
LBD16
<-----------------
AGL2
--------->
DAG2
<---------
ARR14(2)
<-----------------
AG
---------->
DOF2
--------->
GLK1(2)
<---------
At4g35610
>
GT1
--------->
ANAC58
<---------
ANAC58
--------->
GLK1(2)
--------->
At4g35610
tgaagccttttttgggataaggaatttgaaaaaggaatac
cgtgaaggcgaagagagaatcagcaattctggaagccat
tgggaagcagaaaatgcagaa
15059700
<---------
ALFIN1
--------->
LBD16
----------->
HVH21
--------->
LBD16
--------->
ZAT18
--------------------->
WRI1
<---------
ZAT18
--------->
LBD16
------>
NtERF2
--------->
ZAT14
--------->
LBD16
--------->
ANAC46
<---------
ZAT14
<---------
ALFIN1
<---------
ETT(1)
--------->
REM1(2)
<-----------
GT1
*
TSS
----------->
HVH21
<---------
LBD16
--------->
ATHB12
--------->
RAP2.3(3)
<---------
At4g35610
gaagcgaccccccgagagagtttctccggcaatatgtcttatgagattgaatggctgtgaagagccctcacctcttcaccttcttcagcaaattggactt
15059800
-----
--------->
ATHB12
--------->
YAB1
<------------------------
ANAC81
<--------
ATHB1
<------
MYB46(1)
<---------
ICU4
<---------
ANAC46
<---------
YAB1
<------
MYB83
--------->
ICU4
--------->
MYB59
<---------
ATHB12
<---------
TOE1(3)
------------>
CBF
<---------
TOE2(3)
<----------
DOF2
--------->
DAG2
--------->
YAB1
---------->
DOF2
<-----------
GT1
---------->
DOF2
<---------
YAB1
--------->
YAB1
---------->
ID1
<---------
HSFB2a(2)
<---------
WOX13(1)
ccacaattttaaagttgggtttttgtttttttcagtctttttttttttgtcagaaactaaaattttgcatactagaaaagtcgaaacaatgattaatagt
15059900
<-------
--------->
AHL20(2)
--------->
YAB1
-------->
ATHB1
<---------
YAB1
--------->
ATHB51
<---------
AHL20(2)
--------
--------->
ATHB12
<---------
YAB1
--------->
ICU4
<---------
ICU4
<-----------
GT1
<---------
YAB1
--------->
ICU4
--------->
ICU4
<---------
ARR11(3)
<---------
AHL20(2)
<---------
YAB1
----------->
GT1
--------->
AHL20(2)
<--------
--------->
AHL20(2)
<---------
ICU4
--------->
DAG2
<---------
ICU4
--------->
ARR11(3)
--------->
AHL20(2)
<---------
TOE2(3)
---------->
DOF2
--------->
YAB1
--------->
YAB1
<---------
AHL20(2)
----------->
GT1
----------->
GT1
<---------
YAB1
<---------
TOE2(3)
------->
CBF
<---------------
AGL15
<---------
LBD16
--------->
MYB59
---------->
DOF2
caatatttatttaatacagaataacaaaaatggttaagaattattggggaaaaaaaagggttagataattatcaattttttgttaaagataattataaat
15060000
------>
ZmHOX2a(1)
--------->
TOE2(3)
--------->
KAN4(2)
--------->
HSFC1(2)
<----------
TaMYB80
<---------
KAN4(1)
--------->
HSFB2a(1)
--------->
YAB1
--------->
KAN4(1)
<-------
<---------
YAB1
<---------
HSFB2a(1)
------>
MYB83
<---------
AHL20(2)
----------->
GT1
<---------
KAN4(2)
------>
MYB46(1)
--------->
AHL20(2)
--
AHL20(2)
---------->
TaMYB80
<---------
MYB59
<---------
ICU4
--------
->
AHL20(2)
--------->
ARR14(2)
--------->
TOE2(3)
<----------
DOF2
--------
-
YAB1
<---------
ARR14(2)
<-----------
GT1
------>
ZmHOX2a(1)
--------->
YAB1
ttcaaaatgataaatccaaaactcgaatattcctaaaatatgttctcatataaacctaatttcatggggtcctttctaatatttatatttataaacctaa
15060100
<------
MYB46(1)
<------
MYB83
<--------
P
<---------
TOE2(3)
<---------
TOE1(3)
<---------
ARR11(3)
<-----------
RAV1(2)
<---------
ARR14(2)
--
MYB59
--------->
ARR11(3)
->
TOE1(3)
----------->
GT1
--------->
ARR14(2)
<---------
AHL20(2)
<-----
->
TOE2(3)
--------->
ALFIN1
----------->
GT1
---------->
DOF2
------
atttcaggttggcaagttgggcaaaaactgaaatttttggtaaatcttcatactcaaaatcaaagtattttttttgtggagaactgtattagtttaaaaa
15060200
<---------
YAB1
-------->
HAHB4
--------->
YAB1
--------->
ICU4
<<<<<<<<<
RAP2.2
<---------
ANAC58
<---------
TOE2(3)
<---------
ANAC58
----
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
--------->
YAB1
--->
AHL20(2)
----------->
GT1
<---------
YAB1
--------->
AHL20(2)
-------
aattcagagttttagattgtaatgataaatatcaattggagtctatgtctattatttagcttgttcacaaatatttataaactaatacaattctccacta
15060300
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AGI:
At4g30950.1
Description:
FAD6 (FATTY ACID DESATURASE 6); omega-6 fatty acid desaturase. Identical to Omega-6 fatty acid desaturase, chloroplast precursor (FAD6) [Arabidopsis Thaliana] (GB:P46312;GB:Q9M094); similar to FAD8 (FATTY ACID DESATURASE 8), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT5G05580.1); similar to omega-6 fatty acid desaturase [Descurainia sophia] (GB:ABI73993.1); similar to omega-6 desaturase [Brassica napus] (GB:AAT65203.1); similar to Omega-6 fatty acid desaturase, chloroplast precursor (GB:P48627); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase, type
Range:
from: 15056981
to: 15059800
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.