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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
<--------
P
--------------->
AGL15
<---------------
AGL15
------>
ZmHOX2a(1)
<-----------------
AGL3
--------->
TOE2(3)
---------
ZAT18
<-----------------
AGL2
<---------
ARR14(2)
-------->
ZAT14
--------->
ZAT6
--------->
DAG2
--------->
ARR14(2)
-------
----->
YAB1
<---------
ATHB12
<---------
TOE1(3)
<---------
GLK1(2)
----------
-
STY1(2)
--------->
MYB46(3)
<---------
TOE2(3)
--------->
At4g35610
---------->
DOF2
<---
agtaaactctaaccaataacacaactatctacataaggttgcttcaaattacaaagatagcagaaactcaatcctcaaaactcaaagagaaacaaaagct
13603900
------->
MYC3
--------->
O2
<---------
ALFIN1
------->
MYC2
<-------
PIF5
------->
MYC4
------->
PIF5
------->
MYC3
<-------
MYC2
------->
PIF4
<-------
PIF4
<-------
MYC3
<-------
MYC4
<---------
TGA1a
--------->
ARR14(2)
--------->
TGA1a
<---------
ARR14(2)
<---------
ANAC55(2)
<---------
At4g35610
------------>
OsbHLH66
--------->
ZAT2
--------->
ANAC46
<------------
OsbHLH66
--------->
At4g35610
------>
ZmHOX2a(1)
--------->
ANAC55(2)
--------->
GLK1(2)
------->
TEIL
<---------
ALFIN1
<---------
GLK1(2)
--------->
ANAC58
--------->
AtMYB61
--------->
ZAT2
--------->
GLK1(1)
----------->
RAV1(1)
--------->
TOE2(3)
--------->
At4g35610
<---------
ARR14(2)
<---------
ALFIN1
<-------
MYC3
-->
At4g35610
<---------
REM1(1)
<-----------
RAV1(2)
--------->
ANAC58
--------->
AtMYB61
>
DOF2
--------->
TOE1(3)
<------
ZmHOX2a(1)
--------->
ARR14(2)
--------->
SPL7
----------->
HVH21
--------
HVH21
--------->
TOE1(2)
----------->
RAV1(1)
------>
ZmHOX2a(1)
--------->
MYB46(3)
<---
gtcaaatacaaac
cttgaacattggatgtagaggagctagcaccagaagctgcaggtctcctacgcatcctccgtccaccaccagcacgtgccacgtttt
13604000
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------->
YAB1
<---------
ATHB12
------>
MYB83
------>
MYB46(1)
-
--------->
WOX13(1)
<-
--------->
ANAC58
--
--------->
ANAC58
----------->
GT1
<-
------->
TEIL
--------->
MYB46(3)
<----------
ID1
-------
--------
GT1
<---------
AtLEC2
--------->
MYB46(3)
<---------
MYB59
-------
cacgaggttgaac
ctttgcatttcacatgaacaaccaatcaaatcccagaaggaaaaaaaaaacgagacattaccaaaattcaaatccattttcgcaaac
13604100
<---------
ANAC58
----------->
RAV1(2)
--------->
O2
<---------
ANAC58
------>
ZmHOX2a(2)
--------->
HSFB2a(2)
----
<-----------
GT1
--------->
ARR11(3)
--------->
HSFC1(2)
----
--------->
AHL20(2)
<---------
ARR11(3)
<---------
HSFC1(2)
------
<---------
AHL20(2)
----------->
HVH21
<---------
O2
--------->
YAB1
-------->
YAB1
<---------
At4g35610
<---------
CCA1(2)
---------->
DOF2
--------->
LBD16
--------
ATHB12
<---------
MYB46(3)
--------->
LBD16
--------->
DEAR3(1)
<---------
At5g28300
------->
ICU4
<---------
AtMYB61
<---------
ANAC55(2)
<---------
TOE1(2)
--------->
MYB46(3)
<---
--------
YAB1
<---------
AtMYB61
--------->
ANAC55(2)
------>
NtERF2
<----------
ID1
--------->
ANAC46
-->
ANAC58
--------->
ALFIN1
================
HOX2a_HOX2a
<---------
HSFB2a(2)
<---------
LBD16
<----
-->
ANAC58
<-----------
RAV1(1)
------>
ZmHOX2a(1)
----------->
HVH21
---------->
DOF2
<---------
YAB1
aatgataaattac
ctgtggtggttcagcaacttcctcccgtgatctagcatctctccgacgtttccaaaagaacaaaggaatcaccgcaactatgagaat
13604200
--------->
WRKY12
--------->
DOF5.7(2)
------>
ZmHOX2a(1)
--------->
YAB1
==========================
HOX2a_HOX2a
---->
ATHB1
<---------
ARR11(3)
<---------
ARR14(2)
----->
ATHB12
<-----------
ARR10
--------->
ALFIN1
--->
GLK1(2)
--------->
ARR11(3)
--------->
MYB52(1)
------
ICU4
--------->
RVE1(1)
------>
ZmHOX2a(2)
--------->
ARR14(2)
-----
YAB1
--------->
CCA1(1)
--------->
TOE2(2)
------->
GAMYB
--------->
GLK1(1)
cattgagactatcagagcaaatatctcctccat
cgtttacctgtgatccaaaataaccgaagaggggattttgggaaatcgaactagaatattgaaattg
13604300
--------->
GLK1(1)
*
TSS
--------->
At4g35610
<---------
ANAC58
--------->
GLK1(1)
<---------
GLK1(2)
<---------
ANAC58
<---------
ARR14(2)
--------->
ARR14(2)
------>
MYB46(1)
--------->
LBD16
<---------
ARR14(2)
------>
MYB83
--------->
LBD16
<---------
ALFIN1
--------->
MYB52(1)
<---------
MYB59
--------->
ARR14(2)
--------->
ARR14(2)
<---------
GLK1(2)
--------->
TOE2(3)
<---------
ARR14(2)
<------
ZmHOX2a(1)
<----------
DOF2
aaagaatatcggtttcagattagtctaaactcttaacctaatttc
gttttccaaatcgtcgtcttgcccgaggatttgcagagctccactttggactcga
13604400
<---------
ANAC58
--------->
ANAC55(2)
<---------
ANAC46
<---------
DAG2
<---------
ANAC55(2)
<----------
DOF2
----------->
GT1
<---------
WRKY38(1)
<---------
ANAC58
<---------
WRKY45
<---------
MYB52(1)
<---------
WRKY12
--------->
At5g28300
<---------
HSFB2a(2)
----------->
GT1
------>
NtERF2
--------->
HSFB2a(2)
------------>
MYB.PH3(1)
<----------
DOF2
--------->
ANAC58
--------->
WRKY18(1)
---------->
DOF2
--------->
ANAC46
--------->
ANAC58
--------->
ANAC46
<--------
tagagaagacaagcggttatttcgtaatttcccagcgactttgaaacactctggacgcctaagagtcttccaggcctctggtcaactttattgactttcg
13604500
--------->
ANAC58
--------
<---------
WOX13(1)
<-------
--------->
ATHB12
----------->
GT1
<---------
YAB1
--------->
LBD16
--------->
ICU4
<---------
ALFIN1
<-----------
GT1
---------->
ID1
--------->
YAB1
------>
ZmHOX2a(2)
-------
<---------
ZAT14
<-----------------
AGL1
--------->
YAB1
--------->
MYB46(3)
--
DOF2
<------------------------
ANAC81
--------->
ANAC58
<---------
ANAC46
--------
atttcgactactgtgtttttaactgatggttttttgtcttaattggcacataacaagaataat
agtttaagtgttgtgatccaccctggtaacaagatat
13604600
<---------
ZAT6
----------->
GT1
<---------
ZAT14
->
ARR14(2)
---------->
DOF2
--
ARR11(3)
--------->
DOF5.7(2)
<-----------------------
TaNAC69(2)
--
-->
CCA1(2)
--------->
TOE1(3)
----------->
GT1
--------->
YAB1
--
->
ARR11(3)
--------->
TOE2(3)
<---------
HSFB2a(2)
<---------
YAB1
<---------
YAB1
actgagagtagagtcaaacgttaatggagaatgcttaacaatctcgtattacagaagtaacatgtgaaagaaaacgatgatggtctcttagtatcattcc
13604700
--------->
ANAC58
--------->
ANAC55(2)
--------->
ANAC46
--------->
ANAC55(1)
<---------
ANAC55(2)
--------->
CCA1(2)
--------->
ANAC58
--------->
ARR11(1)
<---------
MYB52(2)
--------->
ARR11(3)
--
----------->
GT1
--------->
ARR14(2)
--------->
ANAC58
---
<---------
ANAC55(2)
<---------
ARR11(3)
--------->
ANAC58
------
--------->
ANAC55(2)
<---------
ARR14(2)
--------->
ANAC46
------
--------->
ANAC58
----------->
ARR10
--------->
ZAT14
--------
--------->
ANAC55(1)
----------->
GT1
<---------
ZAT14
------>
ZmHOX2a(2)
<-----
------->
ANAC58
--------->
ANAC58
--------->
DAG2
--------->
ZAT18
-------->
HAHB4
<-------
------->
ANAC58
--------->
ANAC46
---------->
DOF2
<-----------
GT1
--------->
ICU4
<---------
SPL7
aacgctaaaacagaaacaagtaacaagtaatcgaagggaaaggtgaagatatgttttgtaactgcacgatagagtaatgatccacttaaacggcctacgg
13604800
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AGI:
At4g27120.1
Description:
similar to unknown [Populus trichocarpa] (GB:ABK95090.1); contains domain PTHR13270 (PTHR13270)
Range:
from: 13601976
to: 13604345
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g27130.1
Description:
eukaryotic translation initiation factor SUI1, putative. Identical to Protein translation factor SUI1 homolog 1 [Arabidopsis Thaliana] (GB:P41568;GB:Q9SLK5); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT5G54760.2); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT5G54760.1); similar to Protein translation factor SUI1 homolog (Translation initiation factor nps45) (GB:Q9SQF4); contains InterPro domain Eukaryotic translation initiation factor SUI1; (InterPro:IPR005874); contains InterPro domain Translation initiation factor SUI1; (InterPro:IPR00
Range:
from: 13604564
to: 13606454
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.