Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      ------>ZmHOX2a(2)   --------->GLK1(1)   <---------GLK1(1)   <------ZmHOX2a(2) ---->At4g35610 -----ZAT2 ---->ZAT2                             ------->GAMYB -----At4g35610                       <------------MYB.PH3(2) --->ALFIN1               --------------->AtSPL8 -MYC3                  --------->GLK1(2)------>MYB46(1)                             <---------ALFIN1 >MYC2  --------->LBD16 <---------ARR14(2)          --------->YAB1               --------->At4g35610 -MYC2  ------>NtERF2   --------->ARR14(2)       --------->AtMYB61           <----------DOF2 >MYC3<---------LBD16  <---------GLK1(2) ------>MYB83                 <---------ANAC58 --ANAC58          --------->LBD16    --------->MYB46(3)      ----------->RAV1(2)<---------At4g35610 --ANAC58-------------->OsCBT ------->TEIL      --------->MYB46(3)    <---------ANAC58  <---------ALFIN1   ctgcgatctccgcgtcttctccgaagaatctgtacctgtaaccaacttccaccatcaaaaccacatctgggtacttgctctttagctccaccacttgctg  13047800                                                             --------->LBD16                                                            <---------HSFB2a(2)                                 --------->HSFB2a(2)        <---------HSFC1(1)                                 <---------HSFB2a(2)        --------->HSFC1(1)                                <---------LBD16             --------->HSFB2a(2)                                <---------ANAC46       <---------HSFC1(2)                           <---------bZIP60(2)         --------->HSFC1(2)       <----------DOF2                           <---------ANAC58            <---------HSFB2a(1)   <---------ARR11(3)   ---                           <---------ANAC58            --------->HSFB2a(1)   --------->ARR11(3)   ===                 ------>ZmHOX2a(1)               ------>NtERF2              --------->GLK1(1)   <----      <---------ANAC58   <---------TGA2(2)       --------->LBD16            <---------GLK1(1)   -----      <---------ANAC46  ----------->TGA1        <---------DEAR3(1)   <---------LBD16 ----------->GT1      <---------ANAC58--------->YAB1           <---------LBD16  <---------GLK1(1)    <---------ANAC46   <---------ATHB12   <---------ICU4          ------>ZmHOX2a(1) --------->GLK1(1)  <---------ANAC46   ttccaatggtgtgtatttcctcgatgatgacgtttcgggaacatattcctccggcgagggttccagaaatctctggagaaatctttggtgtaaattggga  13047900                                                         --------->ALFIN1                                                       <---------ANAC46                                                       --------->DEAR3(1)                                                      --------->ATERF1(1)                                                      <------NtERF2                                                     ------>NtERF2                                                     <---------RAP2.3(1)                                                     <---------ATERF1(1)                                                     <---------DEAR4(2)                                                     <---------ERF1                                                    <---------DEAR3(1)                                                    --------->DEAR3(1)                                                    <---------ATERF1(2)                                                    --------->ATERF1(2)                                                    <---------ANAC46                                                    <---------RAP2.3(3)                                                    <---------RAP2.3(2)                                                   <---------ABI4(1)                                                   --------->RAP2.3(1)                                                   --------->ATERF1(1)                                                   <------NtERF2                                                  <---------DEAR4(2)                                                  <---------ATERF1(1)                                                 <---------DEAR3(1)                                                <---------LBD16                                               --------->O2                                               <---------ANAC46                                               <---------O2                                               <---------bZIP60(2)       --------->At4g35610                                               <---------TGA1a           --------->HSFC1(2)                                            ----------->HVH21   --------->ETT(1)                      <------ZmHOX2a(1)     ----------->TGA1 <---------MYB46(3)                    <-              <---------ANAC46             <-----------HVH21<---------AtMYB61                     <<<            <---------YAB1                <---------ANAC58  --------->ALFIN1  <---------YAB1      --- --->ZmHOX2a(2) <---------ZAT6      <---------DAG2<---------RAP2.3(1)    <---------HSFC1(2)      ---- ============================HOX2a_HOX2a  <---------ANAC58<---------ZAT2--------->GLK1(2)        <--- -----ARR14(2)<---------ANAC58      <----------DOF2------>NtERF2<---------DEAR3(1)              <---- ---->ARR14(2)<---------ANAC58      =====================bZIP_DOF <------NtERF2         <------ZmHOX2a(1)   tcgggtactgggttttgagtgtgaggagaaagtttaggctttttgggtgacgcggcggcgaggtggtcggagagaagcttacgcttggaaggagagaagg  13048000                         --------->ALFIN1           <---------ARR14(2)           --------->ARR14(2)           --------->ARR11(3)          <---------RVE1(1)          <---------CCA1(2)          <---------GLK1(1)          --------->GLK1(1)         ----------->ARR10                            --------->MYB52(2)         --------->ARR14(2)                           <---------ANAC46         <---------ARR14(2)     --------->ATHB12      <---------ANAC58        <------NtERF2<------NtERF2            <---------ARR14(2)       --------->LBD16  <------NtERF2         <---------GLK1(2)      <---------ANAC58<---------ANAC46      --------->LBD16      <---------ANAC46<---------DREB2C(2) <-----------------AG      <---------ANAC58<---------DEAR3(1)  <---------LBD16     <---------LBD16 --------->ATERF1(1)  ----------------->AGL1   --------->ALFIN1  <---------ABI4(1)    <-----------------AGL1 ------TEIL<---------ARR11(3)  <---------YAB1 --------->ARR14(2)  <---------ARR14(2) <<<<<<<<<<<<<<LFY  ------>NtERF2--------->ARR11(1)   <---------ANAC58 ------>CCA1(2)    ----------->HVH21     -------->P  <-------TEIL --------->ARR14(2) ----->ARR14(2)    <---------DEAR3(1)    --------->MYB52(1)    <------NtERF2                       -- ------ARR14(2)    --------->ALFIN1   --------->At4g35610     <---------LBD16          --------->CCA1(2) --ZmHOX2a(1)   <---------DEAR3(1)    <---------At4g35610    <---------ANAC46       ----------->ARR10   atacagtggcggatatcttcggtggcggtgttgatgattcggctaccggattcggttcgtgagtcggggatttgggtttgggagcgaagaaacgagaaat  13048100                           <----------DOF2                           <---------DAG2                          <---------ANAC58                          <---------ANAC58                     <---------ICU4                    <---------ATHB12                                    <---------ANAC58            <---------ANAC58                                            <---------MYB46(3)            <---------ANAC58     --------->YAB1                         <---------ANAC58       <----------DOF2 <---------WOX13(1)                         <---------ANAC58           <-------  <---------ZAT2    --------->ICU4                                <---------ANAC58          <--------  --------->At4g35610--------->ATHB51                             <---------ANAC46          <-------GAMYB  <---------At4g35610--------->ATHB12                            --------->ALFIN1           <-------- <-----------RAV1(1)<---------YAB1                             <------MYB83        <---------ANAC58 --------->RAV1(2)  <---------ATHB51       ------>ZmHOX2a(1)   <------MYB46(1)     <---------ANAC58   cgtctgctgcttttgcttgcccataattgctttattcgtaatctcctccgtttaagagaaatggaaggtcgtggtcgtggctatggcgaacttgggttgc  13048200                 <---------TOE2(3)                                                                 --                 <---------TOE2(2)                                                        <---------YAB1       --------->ZAT18                                                     <---------DEAR3(2)      <-       <---------ZAT18                                                  --------->MYB52(1)--------->ICU4     <---------LBD16     --------->WOX13(1)                   ----------->HVH21        <---------MYB52(1)    <---------ANAC58   ------------>CBF            <---------ZAT14  --------->ANAC58  --------->At5g28300 -P <---------ANAC58  *TSS                         --------->ZAT14  --------->ANAC58 ----------->GT1 -ANAC58         <---------TOE1(2)           <-----------HVH21----------->TGA1       <---------MYB46(3) -ANAC58   <----------DOF2            --------->WOX13(1)  ---------->DOF2  <---------MYB46(3)    <---   caattttcgcgcgctttcttaggttgccaatctctctaatccatcactgtcactgaacaacaaagtgacgaagccatcggttcggagcggttattatggg  13048300                                                                            <------MYB46(1)                                                                            <------MYB83                                                                           --------->MYB111(2)                                                                           --------->MYB111(1)                                                                           <---------MYB46(3)                                                                           <---------AtMYB61                                                                           --------->ALFIN1                                                                    --------->HSFB2a(2)                                                              --------->ZAT14          <---------AHL20(2)        <---------YAB1                                        <---------ARR14(2)      *TSS        ----------->TBP    --------->AHL20(2)                 <---------ZAT14    <---------bZIP60(1)    <----------DOF2        <---------AHL20(2)                 <---------ZAT18  <---------MYB46(3) ------->LBD16     <---------MYB52(1)              --------->YAB1   <---------HSFB2a(2)--------->AHL20(2) -----NtERF2      ----------->GT1      --------->DAG2         --------->ARR14(2) --------->bZIP60(1) ------LBD16      <---------RAP2.6(3) ---------->DOF2         --------->ZAT18 <---------AtMYB61   ccgggtctttataaatgggccggtattttttaaatgggcctaaagtgccactataacaaatgagtatactctagaagttggtggtgtcattaattctccg  13048400                                   --------->DEAR3(1)                                  --------->MYB46(3)                                 ------>NtERF2                                --------->ANAC46                             <---------TCP20                             --------->PCF2                           <---------SPL7                         --------->SPL7                       ------>NtERF2<---------At4g35610                       <-----------HVH21                       <---------RAP2.6(3)                       <---------SPL7<----------CDC5                      <---------ANAC58                  <---------MYB52(1)--------->At4g35610                          <---------GLK1(1)                 <-------GAMYB --------->MYB46(3)                               <---------ARR11(3)                --------->ANAC46<---------ALFIN1                                --------->ARR11(3)    ------>ZmHOX2a(2) <---------ANAC58    <---------ZAT6             --------->ANAC46   <------ZmHOX2a(2)  <---------ATERF1(2)<---------WOX13(1)        --------->ANAC46  <---------ARR11(3) --------------->AtSPL3  <---------WOX13(1)    <---------ALFIN1 <-----------GT1   tcgagatcgcttctctccccgttgccgtccgtccccaccgctgagtgatagatcgaaacagagaaacacacacggcgaagaagatttcaccatattttgt  13048500                                                    -------->P                                                    --------->MYB52(1)                                                    --------->ARR14(2)                                                    ------->TEIL                                                 --------->ANAC58                                                 --------->ANAC58                                                 --------->ANAC55(2)                                                 --------->ANAC46                                                 <---------ANAC55(2)                   --------->ANAC58                                                 --------->ANAC55(1)                   --------->ANAC58                                                --------------->AtSPL8            <---------TOE2(3)                                                --------------->AtSPL3           --------->MYB52(1)                                         ----------->GT1                       <---------MYB52(2)          <-------GAMYB                  <---------MYB46(3)           <---------ZAT2<------ZmHOX2a(1)      --------->GLK1(2)               <---------ZAT2<---------ARR14(2)--------->At4g35610     <---------GLK1(2)                <---------At4g35610             <---------At4g35610         ---     --------->ARR14(2)             <-----------RAV1(2)--------->ANAC46<---------GLK1(2)    ---------     <---------ARR14(2)--------->CCA1(2)--------->ALFIN1  <----------DOF2<---------LBD16    <--------   ctaagtggattctgttgagagagagagatggctatgtctcaggtggtgaacacgtacccgctttcgaactacagcttcggaactaaggaacccaagctgg  13048600                      --------->ZAT2                  --------->MYB52(1)                 <---------SPL7                 ------>NtERF2                 --------->ORA47(1)                ----------->HVH21                --------->DEAR3(1)               --------->ORA47(2)               --------->ATERF1(1)               --------->DEAR3(2)               --------->RAP2.3(1)               <------NtERF2              <---------RAP2.3(1)              ------>NtERF2              <---------ATERF1(1)             --------->DEAR3(1)            --------->ATERF1(1)                        <----------DOF2                         ------           <-----------HVH21                         ------>ZmHOX2a(1)                         <-----  <------ZmHOX2a(1)--------->SPL7             <---------YAB1                                  <------ ------->DOF2<---------DEAR3(1)          <---------------AtSPL3                  <---------------AGL15 >ZAT2     <---------ATERF1(1)           <---------------AtSPL8<----------DOF2   --------------->AGL15 -ZAT2    --------->ANAC46      <---------TOE1(2)--------->ARR14(2)  <----------DOF2<---------YAB1   aaaaggacacctccgtcgccgaccggctcgctcgtatgaaaatcaagtacgattcctctttccttctttctcttttttgttttcttcttatagctactgc  13048700  Previous    Next  AGI:  At4g25540.1    Description:  MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3). Identical to DNA mismatch repair protein MSH3 (MSH3) [Arabidopsis Thaliana] (GB:O65607;GB:O81818); similar to MSH6 (MUTS HOMOLOG 6-1) [Arabidopsis thaliana] (TAIR:AT4G02070.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ77304.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15508.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain DNA mismatch repair protein MutS-like, N-terminal; (InterP Range:  from: 13042566    to: 13048222    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25550.1    Description:  protein binding. similar to ATCFIM-25/CFIM-25 (ARABIDOPSIS HOMOLOG OF CFIM-25) [Arabidopsis thaliana] (TAIR:AT4G29820.1); similar to unknown [Populus trichocarpa] (GB:ABK95571.1); contains InterPro domain Cleavage and polyadenylation specificity factor, 25 kDa subunit (InterPro:IPR016706) Range:  from: 13048386    to: 13051178    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.