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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----------
DOF2
--------->
GLK1(2)
------>
ZmHOX2a(1)
<<<<<<<<<
TBF1
------------>
MYB.PH3(2)
<---------
ZAT14
<---------
At4g35610
--------->
ICU4
<---------
GLK1(2)
<---------
ZAT18
--------->
At4g35610
----->
GT1
<---------
MYB46(3)
--------->
ZAT18
<-----------
RAV1(1)
<<<<<<<<<
TBF1
-
taacatgatgagtttg
ttagaatctctttgaagacgaacgagtgaacaaactcctaaggctgtttctgctgtctctagttttcttcttcttcatcttctt
12744900
----------
<---------
ALFIN1
--------->
At4g35610
------>
ZmHOX2a(2)
<--------
HAHB4
--------->
PCF2
<---------
ICU4
<------
ZmHOX2a(2)
--------->
YAB1
--------->
ARR14(2)
<---------
YAB1
---------->
DOF2
<---------
ANAC46
<---------
TOE1(2)
<---------
ATHB12
---------->
ID1
<---------
GLK1(2)
--------->
GLK1(2)
--------->
ICU4
<---------
MYB46(3)
<---------
ANAC58
<---------
GLK1(2)
----->
NtERF2
<---------
HSFB2a(1)
<---------
ANAC58
---------->
DOF2
<---------
ARR14(2)
gaggccatcattatctgaagaagagaaggtttgttcttctaaagtgagttcgcgttccagtttcttagagaccgaaagaatctcgtagggatcccacagc
12745000
<---------
ANAC58
--------->
LBD16
<---------
ANAC58
--------->
ARR14(2)
<---------
ANAC46
--------->
GLK1(1)
<---------
ANAC58
--------->
ANAC55(2)
<---------
ARR14(2)
<---------
LBD16
<---------
ANAC55(2)
<---------
GLK1(1)
<----------
DOF2
<---------
ANAC58
---------->
DOF2
->
RAV1(1)
--------->
MYB52(1)
------>
NtERF2
<---------
MYB52(1)
<----------
DOF2
<-------
gactgtccgaattcccaatccaaaaacgacggatgatgctttgcggacaaggcttccgttttgaaacgtgatgccttccctttgacaaaagcatgctttc
12745100
------>
NtERF2
<---------
ATERF1(1)
<---------
At4g35610
--------->
ZAT2
<---------
ZAT2
<---------
MYB46(3)
--------->
At4g35610
--------->
ALFIN1
--------->
LBD16
--------->
ALFIN1
--------->
ANAC46
<---------------
--------->
ALFIN1
<---------
ATERF1(1)
<------------------
--------->
ANAC46
<---------
TOE2(3)
--------->
ANAC58
--------->
ZAT6
---
---
DOF2
--------->
ZAT6
<---------
TOE1(3)
--------->
ANAC58
--------->
REM1(1)
<<<<<<<<<
TBF1
tctgcgcatcgaactctaaaacagtatgttttgaggtttgggagtggctgagccaagcctgcgcagctgccttcatcaactctagtctcttcttcttctc
12745200
<--
------>
ZmHOX2a(2)
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
<---------
ARR14(2)
<<<<<<<<<
TBF1
<------------------------
ANAC81
--------->
ARR14(2)
---------
ANAC81
<---------
CCA1(2)
<---------
LBD16
---
------
ANAC81
<---------
CCA1(2)
<<<<<<<<<
TBF1
<----------
DOF2
<--
--->
ZmHOX2a(1)
<----------
DOF2
------>
ZmHOX2a(1)
<-----------------
AGL1
<------
ZmHOX2a(2)
ctcttcttcttcttcattttcatctttagcctctcgtttcttcctcat
ctctcttcttcttcttctccattttgggacttttggggatccaagtcttatt
12745300
------->
TEIL
<---------
ARR14(2)
<-----------
HVH21
--------->
ARR14(2)
<----------
DOF2
----------->
GT1
<---------
ANAC58
<---------
ANAC58
<
<---------
TOE1(3)
<---------
ANAC58
<---------
ANAC58
---------->
ID1
-
<---------
TOE2(3)
<---------
ANAC46
<---------
ANAC58
<---------
CCA1(2)
-----
-------
ANAC55(2)
*
TSS
<-----------
ARR10
<---------
ANAC58
<-----
------>
ANAC55(2)
--------->
TOE1(3)
<---------
ARR11(1)
<---------
At4g35610
<----------
DOF2
-------
YAB1
--------->
TOE2(3)
<---------
ARR14(1)
--------->
At4g35610
<----------
DOF2
<-
atgtaaggtttaatgtcagcctt
aagtttcttgttcgaatctactcacttctgtcttgtcttctgtcttgtctcttccttttcatctttctttgtttatt
12745400
<---------
ANAC46
--------->
At4g35610
<---------
At4g35610
<---------
MYB46(3)
<--------
P
<---------
ANAC58
<-------
GAMYB
<---------
MYB46(3)
<---------
ANAC58
<---------
ANAC58
<---------
bZIP60(2)
<-----------
GT1
--------->
At4g35610
--------->
At4g35610
---------
AHL20(2)
<---------
At4g35610
<-----------
RAV1(2)
-------->
AHL20(2)
--------->
ARR11(3)
--------->
MYB52(1)
<---------
ANAC58
---->
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
ANAC46
----
YAB1
<---------
GLK1(2)
--------->
AHL20(2)
<---------
At4g35610
--------
AHL20(2)
<----------
DOF2
--------->
YAB1
<------
ZmHOX2a(2)
----------->
HVH21
atttattttcatgcctcgttttttcttagcctttagattttcagatgacaaaaacaaaaataaaaaaaaaacagatcagatgacttggttgctgacaatt
12745500
--------->
YAB1
----------->
GT1
<---------
YAB1
<---------
TOE2(3)
----------->
RAV1(2)
--------->
AHL20(2)
---------->
DOF2
<---------
At4g35610
<---------
AHL20(2)
----------->
GT1
<-----------
GT1
<---------
YAB1
<---------
MYB52(1)
<---------
ARR11(3)
--------->
At4g35610
--
--------->
ICU4
<-------
TEIL
--------->
ARR11(3)
<-----------------
AGL1
------
gttcattatcaatttatcatcgattcgtttattgtcaacaatttagagatgttaaa
gatggtaataacccattgggcatctgaagcccatgtttaatact
12745600
<----------
DOF2
------>
ZmHOX2a(2)
--------->
At4g35610
<---------
At4g35610
<---------
ARR11(3)
--------->
At4g35610
----------->
HVH21
--------->
AHL20(2)
--------->
YAB1
<-----------
HVH21
<---------
AHL20(1)
<---------
ICU4
<---------
AHL20(2)
--------->
LBD16
--------->
AHL20(1)
<---------
YAB1
<---------
YAB1
<---------
ANAC55(2)
<---------
AHL20(2)
--------->
YAB1
<---------
ANAC46
--------->
ANAC55(2)
--------->
YAB1
<----------
TaMYB80
--------->
ICU4
------>
P
<---------
ANAC58
--------->
YAB1
--------->
REM1(1)
----------->
GT1
----
--->
ANAC46
<---------
ANAC58
--------->
AHL20(2)
<-----------
GT1
<---------
At4g35610
-------
caacccgtgatctgcgtttctttatcacaaaataataaaatgagcattttccccttcatcatagctgtagatgatgaagtgatgtttaatcaacaattag
12745700
-
<---------
MYB46(3)
-
<--------
P
<-
<---------
TOE1(3)
<-
<-----------
GT1
<---------
bZIP60(1)
<---------
TOE2(3)
--------->
At4g35610
----->
YAB1
<---------
YAB1
--------->
bZIP60(1)
<-----------
RAV1(2)
<---------
At4g35610
-->
YAB1
----------->
RAV1(1)
<-----------
GT1
--------->
WOX13(1)
XXXXXXXXXXXXX
cataacatttttctgaacaacacaacttcattgttatttgtttatgacctcacaaaaatgg
tcattcaggttgttcagacttctctctcttagctgtttc
12745800
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AGI:
At4g24700.1
Description:
unknown protein
Range:
from: 12744632
to: 12745323
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g24710.1
Description:
ATPase. similar to CDC48B, ATPase [Arabidopsis thaliana] (TAIR:AT2G03670.1); similar to unknown [Populus trichocarpa] (GB:ABK94553.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64241.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959)
Range:
from: 12745557
to: 12749005
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.