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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ANAC55(2)
<---------
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
----------->
GT1
--------->
AHL20(2)
--------->
ARR14(2)
<---------
AHL20(2)
--------->
ARR11(1)
--------->
AHL20(2)
<---------
ARR14(2)
<---------
AHL20(2)
<<<<<<<<<
MYB2
----------->
ARR10
<---------
AHL20(2)
<------
MYB83
--------->
ANAC46
--------->
AHL20(2)
<---------
MYB46(3)
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ANAC58
--------->
AHL20(2)
<------
MYB46(1)
--------->
WOX13(1)
---------
<---------
AHL20(2)
<---------
TOE1(2)
--------->
AHL20(2)
<---------
ANAC55(2)
---------
<---------
AHL20(2)
<---------
TOE2(2)
<---------
AHL20(2)
<-------
TEIL
<---------
YAB1
<---
--------->
AHL20(2)
<---------
MYB52(1)
--------->
AHL20(2)
<---------
GLK1(2)
<------
ZmHOX2a(1)
acatattatatatatatatatatatatatcgttggttttcaaaaaaaaaaaaaaatttgatcaagcaagattcgtaatttcttatgaaggacaataatat
11653000
<----------
DOF2
<---------
DAG2
<---------------
AGL15
----------------->
AGL1
--------->
ANAC46
--------->
ARR11(3)
--------->
ANAC58
------>
ZmHOX2a(1)
<---------
ARR11(3)
--------->
ANAC58
<---------
YAB1
--------->
TOE1(3)
>
AHL20(2)
<---------
TOE2(3)
--------->
TOE2(3)
----------->
GT1
<-----
>
YAB1
----------->
GT1
---------->
ID1
<-----------
GT1
---------->
DOF2
<-----
--------
GT1
<-----------
GT1
<----------
DOF2
---------->
DOF2
<-----
cacaagccttttcgagtaaattaacattgtcctcttcaaactttaacaatatctataactatagccaaaaaagattagaaagtgtaatttgaaaatggct
11653100
<-----
------
<------
MYB46(1)
<------
MYB83
--------->
ANAC58
<---------
ICU4
--------->
ANAC58
--------->
YAB1
<---------
TOE1(3)
--------->
AHL20(2)
<---------
YAB1
<----------
DOF2
<--------
ATHB1
--------->
YAB1
--------->
DAG2
<---------
AHL20(1)
---------->
DOF2
---------->
DOF2
------->
TEIL
<---------
ICU4
----
ANAC58
<---------
TOE2(3)
--------->
YAB1
<---------
ATHB12
----
ANAC58
--------->
AHL20(2)
---------->
ID1
--------->
YAB1
--------->
ATHB51
----
ANAC46
<---------
AHL20(2)
<---------------
AtSPL8
--------->
HSFB2a(2)
<---------
ATHB51
taggcaaaagcataatttaagataaagcaagtcttttcatatagtacatagttttttgtcttctagcatgaatcagactctatcaataattttggcaggt
11653200
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
YAB1
<---------
ICU4
-------->
ATHB1
-------->
HAHB4
<--------
HAHB4
<---------
YAB1
--------->
ICU4
--------->
YAB1
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(2)
<
------>
ZmHOX2a(1)
<---------
ATHB51
--------->
AHL20(2)
-
<---------
ALFIN1
<---------
AHL20(2)
<---------
AHL20(1)
<
--------->
AtMYB61
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ANAC58
--------->
ZAT6
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ANAC58
----
ARR11(3)
--------->
MYB46(3)
<----------
DOF2
<-----------
GT1
<---------
ICU4
--
--->
ARR11(3)
-------->
P
<---------
CCA1(2)
--------->
ATHB51
--------->
AHL20(1)
------>
NtERF2
cttagtagaaatagtaccaaaggctaccactcctctatctaacccttttaattattatttatttttcacaaaatttaattcatagttatggcaccccaaa
11653300
<---------
YAB1
--------->
ATHB51
-------->
ATHB1
<---------
ICU4
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ICU4
<---------
ATHB12
<---------
ATHB51
------------>
CBF
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
--------->
TOE1(2)
<------------
CBF
------------>
CBF
---------------
AtSPL3
----------------->
AGL1
--------->
ANAC58
-------->
DAG2
------>
NtERF2
<----------
DOF2
---------------
AtSPL8
<---------
HSFB2a(2)
<---------
YAB1
--------->
WOX13(1)
-------->
DOF2
<-----------
GT1
--------->
HSFB2a(2)
<----------
DOF2
--------->
ANAC58
*
TSS
aaaaagtacgaaattattacagttttggaggtttctgaaacctctgcctattgtggaggcttttgattcctttgaagcaatcaatgacctc
tctgtctct
11653400
----
----------
---------->
DOF2
--------->
ANAC55(2)
<------
NtERF2
<---------
ANAC58
---
<---------
At4g35610
------->
TEIL
<---------
CCA1(2)
<---------
ZAT2
<---------
TOE2(3)
--------->
ARR14(2)
<---------
TOE2(2)
------>
NtERF2
----------->
GT1
<---------
TOE1(3)
<-----------
GT1
------>
ZmHOX2a(1)
<---
--------->
ANAC58
<---------
YAB1
<---------
ARR11(3)
<---------
At4g35610
<---
--------->
ANAC58
<---------
AHL20(2)
<-----------
GT1
<---------
ARR14(2)
<---------
TOE1(2)
<---------
ATERF1(2)
<-----------
RAV1(1)
<---------
YAB1
<---------
GLK1(2)
<-----------
RAV1(2)
--------->
ATERF1(2)
<---------
TOE2(3)
--------->
AHL20(2)
<-----------
GT1
<---------
ANAC58
<--
catttgccagcaaagagagattgtttaatgttgtttatggttcacatttttatacaatatcacattttcactgaatcttcctctgcgtctctcag
gtaat
11653500
--------->
AHL20(2)
--------->
ATHB51
<---------
AHL20(2)
<--------
ATHB1
--
<---------
ICU4
<---
<---------
YAB1
<---
--------->
ICU4
-----
----->
AHL20(2)
--------->
YAB1
<----
->
GT1
<----------
DOF2
--------->
ICU4
============
------>
AHL20(2)
-------->
HAHB4
<------
ZmHOX2a(1)
------
AHL20(2)
--------->
ATHB12
--------->
ATHB12
===============
------
AHL20(1)
<---------
YAB1
--------->
ICU4
<------
ZmHOX2a(1)
-------
AHL20(2)
<---------
ATHB12
<----------
DOF2
--------->
AHL20(2)
<-----------
RAV1(2)
ttaattctctcttttctctcccatcactctgtctcttctctttattgggttttagataaaatgatggaataataatttcatggattcag
gaggaagaaga
11653600
---------->
DOF2
<---------
REM1(1)
<---------
At4g35610
<-------
GAMYB
--------->
At4g35610
------->
WOX13(1)
---
ZmHOX2a(2)
------
YAB1
---->
ARR11(3)
-----
ARR11(3)
------
===
HOX2a_HOX2a
---------->
DOF2
--------->
ANAC58
--------->
ALFIN1
-------
===
HOX2a_HOX2a
<---------
AHL20(2)
--------->
ANAC58
>>>>>>>>>
TBF1
--------
tcattcagttgaagcacacatttaaagggttttgttgagaggca
atggaagggggagaagagtttcaagaagaagaagtgtggtcagttttgagagaaag
11653700
--------->
ANAC46
---------->
DOF2
------>
ZmHOX2a(1)
--------->
KAN4(2)
<---------
HSFB2a(1)
--------->
YAB1
<-----------
GT1
<-------
TEIL
----->
GT1
------>
ZmHOX2a(1)
----------->
GT1
--------------->
AtSPL8
<-
-->
DAG2
<---------
ARR11(3)
--------->
DAG2
--------->
At4g35610
---------->
DOF2
<--
-->
DOF2
--------->
ARR11(3)
---------->
DOF2
------>
ZmHOX2a(1)
--------->
HSFB2a(1)
<------
tgaaactcaaggtcctgaaatgaaaatgtccaaaagtaacaatctcttctcagcctcttcctcatcttctgcgaggtacattcctaaaggcaacgaggtc
11653800
--------->
KAN4(2)
<---------
KAN4(1)
--------->
KAN4(1)
<----------
TaMYB80
<---------
ATHB12
--------->
At4g35610
----------->
RAV1(2)
<---------
TOE1(2)
<-------
TEIL
----------->
GT1
XXXXXXXXXXXXXXXXXXXXX>
MIR828
<---------
TOE2(3)
--------->
ANAC58
--------
HSFB2a(2)
--------->
At4g35610
----------->
HVH21
--------->
ANAC58
-------
-------
LBD16
<---------
At4g35610
------>
ZmHOX2a(1)
---------->
DOF2
--------->
RAP2.6(2)
---
ARR11(3)
<-----------
HVH21
------->
TEIL
<---------
TOE2(2)
--------->
ANAC46
-------
tctggaggggcaaaacagtcatctgctccaatgaatattcctgactggtccaaggtttatgggtattcaaagaagaacacaagcagccacttgcattcat
11653900
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AGI:
At4g21970.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04630.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38947.1); contains InterPro domain Protein of unknown function DUF584 (InterPro:IPR007608)
Range:
from: 11653392
to: 11654148
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.