Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <--------P                                                                                 <------MYB83                                                                                 <------MYB46(1)                                                                              <---------ANAC58                                --------->ICU4                                <---------ANAC58                            <------ZmHOX2a(1)                        --------->ARR11(3)                           <----------ID1                            --------->AHL20(1)                          <---------TOE2(3)                          <---------ARR11(3)      <-----------GT1<---------AHL20(2)                              <---------AHL20(1)  <---------AHL20(2)<---------------AGL15               --------->CCA1(2)    --------->ATHB12<------- <---------AHL20(2) --------------->AGL15              --------->ARR11(3)   <---------YAB1   <------- ----ICU4         <---------AHL20(2)   ---------->DOF2 <---------ARR11(3)<-------TEIL        -------- ---ATHB12      <---------YAB1---------->DOF2--------->ALFIN1     --------->AHL20(2)         --------   ttttttatttactaaactattattttataaggaaaagattgaaaagagtaggggaaagatatatgtgaaaaaatattcatgcttggtagataaaaaatat  11510700                                                                                          <---------ANAC58          <----------ID1                                                                  <---------ANAC58      ---------->DOF2                         --------->AHL20(2)                        --------->ARR11(3)     --------->AHL20(2)                <----------DOF2                                  <---------ARR11(3) --AHL20(1)                    <---------ARR11(3)                ---------->DOF2        --------->AHL20(1) --ARR11(3)                    --------->ARR11(3)         <---------HSFB2a(2)          --------->RVE1(1) ->ARR11(3)                   --------->RVE1(1)           --------->HSFB2a(2)          --------->CCA1(1) ->AHL20(1)--------->CCA1(2)  --------->CCA1(1)   <---------AHL20(2)      --------->At4g35610   ttcacaaataaagagacaagtatatgtcaaaaatatcatgtcttttgaataaataatcttctaaaaaaaaagaattagatgaactataaatatcttgtgg  11510800                    --------->ICU4                        <-------TEIL               ----------->GT1                        <---------------AtSPL8                      ---         ----------->HVH21    --------->TOE1(2)       --------------->AtSPL8    ----------->GT1------       --------->TOE2(3)--------->YAB1           --------->YAB1  <---------------AtSPL3  --------->MYB52(1)    ------->TEIL--------->At5g28300 <------ZmHOX2a(2)---------->DOF2          ------->TEIL    <------   tatatgaatccttgacactgtaaaaatcaaaacatgagatcagaaacacaagtataaaagtacattacaagtacggtatgaatcgaaaaaaaaacagaat  11510900                                                                                                  ---              ----------->GT1                                                                    ----           <---------At4g35610                         <---------ZAT6                         -------           <---------ZAT2               <---------AHL20(2)--------->ICU4                      ------- -------->HVH21                        <---------AHL20(2) <---------AHL20(2)         --------->AHL20(2) --->GLK1(2) ----------->GT1           --------->AHL20(2) --------->AHL20(2)        --------->AHL20(2) ---GLK1(2)--------->At4g35610   <----------DOF2     ----------->GT1 --------->AHL20(2)   ---------->DOF2   ttgacaggttttgagctgataaaaactatttcaggcttttattaatttttaaaaatagtattaattgtttttaaaataagacataaataaaaaaaagaac  11511000                                                                                --------->YAB1                                                                                <---------ICU4                                                                           ------------>CBF                                                                          <-----------GT1                                                                          --------->YAB1            <                                                                       <---------ARR14(2)           <                                                                    <---------ANAC46                - ---------->DOF2                     --------->TOE1(3)         <---------ICU4 --------->GLK1(2)     - ------>At5g28300     <---------ANAC58              <------ZmHOX2a(1)<---------RAP2.6(3)            < ------->GT1          <---------ANAC58          --------->TOE1(2)   <---------ANAC58            <---- ----->MYB.PH3(1)     <---------ANAC46          --------->TOE2(2)   <---------ANAC58        <-------- -->MYB52(1)    ------>NtERF2        --------->TOE2(3) ---------->DOF2 --------->ARR14(2)   ---------   ggttaaagaaaatgaaggggcccttcgtgttttgttttcccttaaaaaaaccaaggacaaaggcataatgccgtattcacaatcttgactcttcgttatc  11511100        <---------GLK1(1)               ------>MYB46(1)   <-------TEIL             --------->ANAC58  ------>ZmHOX2a(2)                     ------>MYB83     --------->CCA1(2)       ------->GAMYB ---------AGP1                        --------->TOE2(3) --------->ARR14(2)       --------->TOE1(2) ---------ARR14(2)            ----------->RAV1(1)       <---------ARR14(2)      --------->MYB46(3) -------->ARR14(2)         --------->ANAC58             XXXXXXXXXXXXXXXXXXXX>MIR403--------->ANAC58 -------->ARR11(3)         *TSS       <---------MYB59 --------->LBD16          -------->P ---------ARR11(3)         --------->ANAC58         <---------LBD16           --------->WOX13(1) -----LBD16                --------->ANAC46    <---------DAG2                --------->MYB46(3) -MYB52(1)            <---------HSFB2a(2)      <----------DOF2            <---------ICU4    --------- >DOF5.7(2)           --------->HSFB2a(2)   <-----------GT1               --------->YAB1 >>>>>>>>>TBF1   tggatctagggtttctctcgatttttagaacgccacaaaacctaataaacttttcccagatacacaaacaaactcatcatcaaccaaggaagaagaaaga  11511200                                          ===================================HOX2a_HOX2a                             <---------MYB52(1)                              --------->ZAT6                        <---------ICU4    ------>ZmHOX2a(2)              <---------MYB52(2)                        --------->ATHB12 ====================================HOX2a_HOX2a                       <---------YAB1    <------ZmHOX2a(2)               --------->MYB46(3)                     --------->YAB1     --------->ARR14(2)            <----------ID1                  <---------ARR14(2)    <---------AGP1          --------->TOE2(3)                  >>>>>>>>>GATA-1       <---------ARR11(3)    <---------ARR11(3)                  >>>>>>>>>GATA-4       <---------ARR14(2)    --------->GLK1(2)                  >>>>>>>>>GATA-2       --------->AGP1 <----------ID1 <------ZmHOX2a(1)      <-------  <---------TOE2(3) <-------TEIL        --------->ARR11(3)    --------->ARR11(3)       <---------YAB1 ->DOF2           >>>>>>>>>GATA-3  <-----------GT1---------->DOF2   <---------TOE2(3) <-----------GT1   aactagggtttttttttgtggattcatcatcggtattttacagatctatattcaaagggaacaaaatcttaaggaacaaacactaaattttcattctttc  11511300                                                   ----------->GT1                                                 ---------->DOF2                                           <---------ANAC58              --------->YAB1                           <----------DOF2 <---------ANAC58        ------>ZmHOX2a(2)                         <------------------------ANAC81          <------ZmHOX2a(2)                    <---------ARR11(3)   <---------YAB1          <---------ARR14(2)   --------->ZAT14                    --------->ARR11(3)  <---------GLK1(2)        --------->ARR14(2)<---------ANAC46     <-----------GT1--------->GLK1(2) ====================================HOX2a_HOX2a <---------ZAT14    <-----------GT1 <-----------ARR10 ===================================HOX2a_HOX2a  --------->ZAT18 ---DOF2       --------->YAB1         ------>ZmHOX2a(1)      <---------LBD16       <---------ZAT6 ---   tcttatttacccatttatcaaaaatcttccttttgttttcctgattcttgctaaagaaaaaaactcggatccaattcataaactagtgtggactggtgat  11511400                                         <---------YAB1                                     --------->ARR11(3)                                     <---------GLK1(2)                                            ---                             --------->DAG2                                        ==================    <-----------------AGL1  ---------->DOF2               --------->At4g35610      ==================  --------->WOX13(1)   ----------->RAV1(1)     ------->TEIL                <-------TEIL    <--------- ------>WOX13(1)--------->MYB52(1) ----------->ARR10      <---------At4g35610      ------>ZmHOX2a(2)<   caatctatcaattctggccaagggacaacaaaaagtttagattttgatgaaccaattttgagatgagacaatagacatccattgatctgtaaactttaag  11511500                                                                                       <-----------HVH21              ---------->DOF2                                                        <---------------AGL15          ---------->DOF2      --------->YAB1                                       <----------------     ----------->GT1           -------->HAHB4                                     <-----------GT1 --------------------->ANAC81 --------->ICU4                                    --------->CCA1(2) ======HOX2a_HOX2a            <---------YAB1                                   --------->ARR11(3) ============HOX2a_HOX2a    --------->YAB1                                     <---------ARR14(2) -DOF2<------ZmHOX2a(1)  ----------->GT1                                       --------->ARR14(2) ------ZmHOX2a(1)        --------->YAB1     --------->ALFIN1                   <---------ARR11(3)   aaggagaaggagaaaagaaagtatgtatagtaataatagagtagaagtgtttcatggtgatggaagacttggagaattggagatatacccttcaagggaa  11511600  Previous    Next  AGI:  At4g21670.1    Description:  CPL1 (FIERY 2); double-stranded RNA binding. similar to CPL2 (CTD phosphatase-like 2), double-stranded RNA binding [Arabidopsis thaliana] (TAIR:AT5G01270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16921.1); similar to hypothetical protein OsJ_007422 [Oryza sativa (japonica cultivar-group)] (GB:EAZ23939.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72816.1); contains InterPro domain NLI interacting factor (InterPro:IPR004274); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) Range:  from: 11511127    to: 11517408    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.