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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
NtERF2
--------->
At4g35610
--------->
ZAT18
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<----------
DOF2
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
LBD16
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
At4g35610
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
ANAC58
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
YAB1
xxxxxxxxxxxxxxxx>
smallRNA(i)
------>
NtERF2
<---------
TOE1(2)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ZAT6
<--------
HAHB4
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
At4g35610
<---------
TOE2(2)
<---------
ANAC46
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
YAB1
--------->
ATHB12
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
ICU4
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
TOE1(3)
<---------
ANAC58
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
YAB1
<---
----------
AGL3
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
ATERF1(1)
<---------
ATHB12
------
>
SPL7
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
ICU4
<-----
-->
AtSPL8
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
YAB1
<---------
ANAC58
-->
AtSPL3
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
------>
NtERF2
<---------
TOE2(3)
--------->
TOE2(3)
----
aaatgagatggactaaaccgcagacaaattagaccgctttgtccgctgcctccattcatagtcttaggttatgtttctaatcattagatagcgcgtgagc
11231000
<-------
TEIL
--------------->
AtSPL8
--------------->
AtSPL3
------->
TEIL
<---------
DOF5.7(2)
----------->
HVH21
------->
PIF4
<-------
MYC3
------->
MYC3
<-------
PIF4
<-------
PIF5
<-------
MYC2
------->
MYC2
------->
PIF5
------->
MYC4
<-------
MYC4
<---------
TGA1a
--------->
ANAC55(2)
<---------
ANAC55(2)
--------->
ANAC58
================
bZIP_DOF
<-----------
HVH21
---------->
DOF2
------->
TEIL
--------->
bZIP60(2)
<-------
TEIL
--------->
DOF5.7(2)
--------->
CCA1(1)
----
------
ZAT18
--------->
TGA1a
--------->
RVE1(1)
--------->
AHL20(2)
<-------
--->
At4g35610
--------->
ANAC58
----------->
GT1
<---------
AHL20(2)
--------
----
At4g35610
<------------
OsbHLH66
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------
----->
ZAT18
--------->
ANAC46
<-----------
GT1
--------->
YAB1
<---------
AHL20(1)
<-------
acacatatattcatacagcacgtgaacgtacatgttttcacatactatctcctatagtaaatatccatgtcatatatttatatagttggacttaattaat
11231100
<---------
AHL20(2)
--------->
TOE2(3)
--------->
AHL20(2)
<-----------
GT1
<----------
DOF2
--------->
YAB1
------->
GT1
<---------
ANAC58
<---------
AHL20(2)
<-
--
AHL20(2)
<---------
ANAC58
<---------
YAB1
<---------
YAB1
---
->
AHL20(2)
<---------
GLK1(1)
--------->
AHL20(2)
<---------
ANAC58
--------->
ANAC58
->
AHL20(1)
--------->
ZAT6
<---------
AHL20(2)
<---------
ANAC58
--------->
ANAC58
--
AHL20(1)
<-----------
GT1
------>
ZmHOX2a(1)
--------->
AHL20(2)
<-----------
GT1
<------
tgttaattacattctcaattttcactagatttctttcctgtttatttaattttctgatttaatagcttatcaaaattttcacatactgacaagaattaac
11231200
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
--------->
ARR11(3)
--------->
AGP1
--------->
WRKY45
--------->
ALFIN1
<---------
YAB1
--------->
TOE2(3)
<---------
AGP1
<-----------
GT1
<---------
TOE2(3)
<---------
ARR11(3)
<---------
ARR11(3)
--------->
TOE1(3)
<---------
ARR14(2)
--------->
ZAT6
---
--------->
TOE2(3)
--------->
REM1(2)
--------->
AHL20(2)
--------->
TOE1(3)
--------->
At4g35610
<---------
ANAC58
<---------
AHL20(2)
--------->
TOE2(3)
--------
MYB52(1)
-------->
P
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
---
------>
TOE2(3)
<---------
At4g35610
<---------
ANAC46
<---------
GLK1(2)
<----------
DOF2
------>
ZmHOX2a(1)
-----
GT1
<-----------
GT1
--------->
MYB52(1)
----------->
ARR10
--------->
AHL20(2)
--------->
ZAT6
---
ccttagtttttttactaagcttaccctaacgtttatggtgtgtagatagatcttcagattttattaaacactatctttgactaactctccttaaatgttc
11231300
--------->
YAB1
<------
ZmHOX2a(2)
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
--------->
ARR11(3)
------>
ZmHOX2a(2)
<---------
ARR11(3)
<------
ZmHOX2a(2)
----------->
TBP
---------->
DOF2
--------->
ARR14(3)
------->
TEIL
------->
GAMYB
--------->
ARR14(2)
<---------
ARR11(3)
----------->
RAV1(1)
<---------
ARR14(2)
--------->
ANAC58
--------->
ANAC46
<---------
ARR14(3)
--------->
ANAC58
--------->
HSFB2a(2)
--------->
ARR11(3)
------>
ANAC58
--------->
ANAC46
<---------
ARR11(3)
----
------>
ANAC58
----------------->
AGL1
<---------
AGP1
-----
------>
ANAC46
----------------->
AG
----------->
ARR10
<----------
DOF2
<---
acgccccaagaacctatataagaatacactttccacaacagaaaagatcatagtaacaagaagatcttataaattaagtcttcgcgtttttggagaaatt
11231400
--------->
ALFIN1
xxxxxxxxxxxxxxxxxx
--------->
LBD16
--------->
DEAR3(1)
------>
NtERF2
--------->
AtMYB61
--------->
ANAC46
--------->
MYB46(3)
<------
NtERF2
<---------
MYB55(2)
-------->
P
<---------
ABI4(2)
<-----------
GT1
------>
NtERF2
--------->
AHL20(2)
--------->
PCF2
----->
AHL20(2)
--------->
ATHB51
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
---->
AHL20(2)
<---------
AHL20(2)
<---------
ATHB12
------->
TEIL
<---------
ALFIN1
------
AHL20(2)
--------->
ICU4
<-----------
GT1
--------->
AHL20(2)
----------->
HVH21
-----
aaaataaacaacctctcgagagaa
atgaataatttgaatgtttttacaaatgaagacaatgaaatgaatgtgatgcccccaccgcgagtgtgtccaaggt
11231500
--------->
ANAC58
<---------
At4g35610
--------->
ANAC58
<-------
TEIL
--------->
ANAC46
--------->
ARR14(2)
--------->
ZAT18
<---------
GLK1(2)
<---------
ZAT18
<xxxxxxxxxxxxxxx
<---------
ARR14(2)
------->
GAMYB
--------->
ICU4
<xxxxxxxxxxxxxxx
<------
ZmHOX2a(2)
--------->
MYB46(3)
--------->
DEAR3(1)
<-----------
RAV1(1)
xxxxx>
smallRNA(fl3)
--------->
At4g35610
--------->
MYB46(3)
--------->
ARR11(3)
------>
GT1
----------------->
AGL2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
REM1(1)
<
gttattccgatcaaaccagattcagctacttcaacaacaacaagaagtctcaaccgcgctacaaatgcaagaattgttgtagatgttggactcatggtgg
11231600
<-----------
HVH21
<------
ZmHOX2a(2)
--------->
MYB52(1)
---------
--------->
HSFB2a(1)
<---------
ARR11(3)
<---------
HSFB2a(1)
--------->
ARR11(3)
<------
ZmHOX2a(1)
--------->
AGP1
<---------------
AtSPL8
--------->
GLK1(1)
<---------
TOE1(3)
------>
ZmHOX2a(2)
<---------
TOE2(3)
<---------
ARR11(3)
xxxxxxx
smallRNA(fl3)
--------->
ANAC55(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
--
xxxxxxxx
smallRNA(fl3)
<---------
ANAC55(2)
--------->
LBD16
--------->
ARR14(2)
----------->
ARR10
----------
DOF2
--------->
ANAC46
<---------
ATHB12
--------->
WOX13(1)
<---------
ATHB12
--
agttttaaggaacataccagtcactggaatatgtgataaatccaatcttccgaagatagatcaatcttcggtttctcaaatgatcttggctgagatccaa
11231700
------->
TEIL
<---------
ICU4
--------->
YAB1
<---------
ATHB12
<-----------
RAV1(1)
--------->
ICU4
<---------------
AGL15
--------->
WOX13(1)
<<<<<<<<<
TBF1
--------------->
AGL15
>
CCA1(2)
-------->
P
--------->
AHL20(2)
<<<<<<<<<
TBF1
<-----------------
AGL2
------->
ANAC58
<---------
AHL20(1)
<---------
ZAT6
<-----------------
AGL3
<-
------->
ANAC58
<---------
AHL20(2)
<---------
MYB52(1)
<---------
At4g35610
--------
caaggcaatcatcaacctttcaaaaaatttcaagaaaacatttcagttagtgtttcttcttcttcagatgtttctattgttgggaaccatttcgatgatt
11231800
--------->
ZAT18
<---------
ZAT14
--------->
ZAT14
<---------
GLK1(2)
<---------
ZAT18
--------->
ARR11(3)
--------->
ARR11(3)
--------
ANAC46
------>
ZmHOX2a(2)
--------->
GLK1(2)
<--------
->
ATHB12
--------->
ANAC46
<-----------
GT1
----------->
ARR10
<---------
ARR11(3)
tgagtgaacttcatggtataacaaattctactccaattcgaagttttacaatggatcgcttagattttggtgaagaatcgtttcaacaagatttatacga
11231900
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AGI:
At4g21030.1
Description:
Dof-type zinc finger domain-containing protein. Identical to Dof zinc finger protein DOF4.2 (DOF4.2) [Arabidopsis Thaliana] (GB:Q9SUB1); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21050.1); similar to elicitor-responsive Dof protein ERDP [Pisum sativum] (GB:BAA85655.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851)
Range:
from: 11231425
to: 11232009
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.