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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
--------->
ICU4
<--------
HAHB4
<---------
ICU4
--------->
YAB1
--------->
ICU4
---------->
DOF2
--------->
ANAC58
<---------
AHL20(2)
------>
ZmHOX2a(1)
--------->
ANAC58
--------->
ATHB51
--------->
TOE1(3)
<---------
STY1(2)
<---------
ATHB12
--------->
TOE2(3)
--------->
STY1(2)
<---------
YAB1
------>
MYB83
<---------
ZAT2
<---------
MYB52(1)
-----
------>
MYB46(1)
--------->
CCA1(2)
--------->
YAB1
--------->
AHL20(2)
<-----------
GT1
<------
NtERF2
<---------
YAB1
--------->
WOX13(1)
---------
agataaacatccacaagaacaaaattataccatccttaagaaaggccgagagatgctagctacgataagcatcagttaatcattatttattttac
ctcag
10660700
--------->
At4g35610
--------->
HSFB2a(2)
<---------
At4g35610
<---------
HSFB2a(2)
---
------>
ZmHOX2a(1)
<---------
ETT(2)
<---
--------->
bZIP60(1)
<----------
DOF2
------>
ZmHOX2a(1)
----
<---------
GLK1(1)
<------
ZmHOX2a(2)
--------->
LBD16
<----
<---------
bZIP60(1)
<---------
ARR11(3)
----------->
RAV1(2)
--------->
ANAC55(2)
--------->
GLK1(1)
--------->
ARR11(3)
----------->
GT1
--------->
bZIP60(1)
------
---->
At4g35610
================
HOX2a_HOX2a
<----------
ID1
<---------
bZIP60(1)
<-----
>
TOE2(3)
--------->
ZAT18
<---------
DAG2
----------->
GT1
--------->
ANAC46
<------
catcactgatatcagataagtcctctgcaagatcacctttagactgtcgagaaggaaaaactc
ctgaaaaatcaaatcacatcaccatttaagtatttac
10660800
--------->
ARR11(3)
<---------
GLK1(1)
<---------
ARR11(3)
---------->
DOF2
--------->
AHL20(2)
<----------
DOF2
<---------
ARR14(2)
------>
LBD16
<---------
ICU4
<-----------
RAV1(1)
------
HSFB2a(2)
--------->
GLK1(2)
<---------
MYB46(3)
----->
HSFB2a(2)
<---------
ARR11(3)
--------->
MYB52(2)
-----
LBD16
--------->
GLK1(1)
<----------
DOF2
<----------
DOF2
--->
MYB52(1)
--------->
At4g35610
--------->
ZAT6
<---------
AtLEC2
--------->
ARR14(2)
----
At5g28300
<---------
At4g35610
--------->
AHL20(2)
<----------
DOF2
---------->
ID1
<---------
TOE2(3)
-----
GT1
--------->
ARR11(3)
<-----------
GT1
--------->
ALFIN1
--------->
TOE2(3)
<---------
TOE1(3)
cggaaaataaaagatatcatctgcataatctttaacaatataacactcatggagaggggtctttgcattac
ctttgttgccatatacttttaggtttcta
10660900
<-----------
GT1
<------
ZmHOX2a(2)
--------->
GLK1(1)
------->
GAMYB
<---------
GLK1(1)
------>
MYB83
<---------
ZAT14
------>
MYB46(1)
<---------
ANAC58
<----------
DOF2
--------->
MYB52(1)
<---------
GLK1(2)
<---------
ARR11(3)
----------->
RAV1(2)
--------->
MYB46(3)
<---------
ANAC58
<---------
WOX13(1)
<---------
ATHB12
<---------
ALFIN1
--------->
AtMYB61
--------->
YAB1
---------->
DOF2
gccaataactttactgatttctccac
ctgaaattgatacaccaacgatcaaaaacattcaaaacatagcttctcaacaaaaaagagcagattgataccat
10661000
----------->
RAV1(1)
--------------->
AGL15
<---------------
AGL15
----------------->
AGL2
<-----------------
AGL1
--------->
ANAC58
----------------->
AGL3
--------->
ANAC55(2)
----------------->
AGL1
--------->
ANAC58
<-----------------
AGL2
------>
ZmHOX2a(1)
---------->
DOF2
--------->
ARR14(2)
<----------
ID1
----------->
GT1
<-----
---------->
DOF2
--------->
MYB52(1)
<---------
ARR11(3)
<-----------------
AG
<---------
YAB1
caaacaaagttcctcataagtaatggaatctatagttttgtcatcgagccaatatcaataccacaaagagaccacatatggtaaactaagtttcttatta
10661100
<----
------
<------
<------
------------>
CBF
<-------------
--------------
--------->
ANAC58
--------------
<------
ZmHOX2a(1)
<-------------
--------->
LBD16
--------------
<---------
ICU4
=======================
HOX2a_HOX2a
--------->
ANAC58
--------->
YAB1
<------
ZmHOX2a(2)
----------->
GT1
--------->
ANAC46
<---------
YAB1
<---------
AHL20(2)
--------->
GLK1(2)
--------->
ANAC58
--------->
ICU4
--------->
AHL20(2)
--------->
ARR14(2)
<---------
YAB1
--------->
ANAC58
--------->
YAB1
<---------
AHL20(2)
<---------
ARR14(2)
<-----------
GT1
------->
TEIL
---
------
GT1
---------->
DOF2
--------->
At4g35610
----------->
GT1
<------------
CBF
--------
cattac
cat
gatcacaaagctctaaaatttaatctagaatcagatcaaaatccgaataaggagggagaaaattttaccattgttcacgaacccaatgcgg
10661200
------>
ZmHOX2a(1)
------->
MYC3
<-------
MYC2
------->
MYC4
<-------
MYC4
--
NtERF2
------->
MYC2
--->
LBD16
-------->
ABF1
---
RAP2.6(2)
--------->
GLK1(2)
<---------
ANAC55(2)
----
ID1
<---------
ARR14(2)
--------->
O2
----
AG
--------->
ARR14(2)
--------->
TGA1a
--->
AGL1
<-----------
ARR10
--------->
RVE1(1)
<---------
TGA1a
--->
AG
------>
ZmHOX2a(2)
<---------
AHL20(2)
----------->
RAV1(2)
<-------
MYC3
----
AGL1
<---------
DEAR3(1)
--------->
AHL20(2)
--------->
ANAC58
=======================
--->
AGL2
<---------
LBD16
--------->
AHL20(2)
--------->
ANAC58
<---------
O2
------->
DOF2
<---------
GLK1(2)
--------->
AHL20(2)
<<<<<<<
ZML2
--------->
ANAC55(2)
->
RAP2.6(3)
<---------
DEAR3(2)
--------->
AHL20(2)
--------->
TOE1(2)
<-----------
GT1
--
caaagatagatcgccggtgagaatctgggttttaaaataaaaaaatatcagaaacctagaacgcctgggtttgaattaacacgtgtcctagtcaaattgg
10661300
--------->
ANAC58
--------->
ANAC58
--------->
O2
--------->
ANAC46
--------->
ANAC58
--------->
ANAC55(1)
------->
TEIL
--------->
ANAC55(2)
<---------
ZAT18
<---------
ANAC55(2)
<---------
CCA1(1)
--------->
ANAC58
<---------
RVE1(1)
--------->
TGA1a
--------->
ARR11(3)
--------->
LBD16
<---------
TGA1a
--------->
YAB1
<-----------
GT1
--------->
ARR14(3)
<---------
O2
<----------
DOF2
<-----------
TBP
--------->
ARR14(2)
--------->
bZIP60(2)
--------->
YAB1
<---------
AHL20(2)
--------->
ARR11(3)
==========================
bZIP_DOF
--------------->
AtSPL8
<---------
ARR14(3)
=================
bZIP_DOF
<---------
YAB1
--------->
AHL20(2)
--------->
GLK1(2)
--------
<----------
DOF2
--------->
DEAR3(1)
<---------
AHL20(1)
<---------
ARR11(3)
----------
===============
bZIP_DOF
<---------
DAG2
<---------
ARR11(3)
<----------
DOF2
---------------
--------------------->
TaNAC69(2)
<---------
YAB1
<---------
YAB1
--------->
YAB1
<--------------
ttataggctttgccacgtaagcacagacccttttgataataagatatttatatttgtaccctctttaatatcaaaatcttcgattttcccccaaaaagaa
10661400
----------->
GT1
<---------
MYB46(3)
--------->
ALFIN1
--------->
LBD16
<---------
AtMYB61
<-------
<---------
HSFB2a(2)
<---------
MYB46(3)
<---------
CCA1(2)
--------->
HSFC1(1)
--------->
ALFIN1
------>
NtERF2
<<<<<<<<<<
AtSR1
<---------
HSFC1(1)
<---------
AtMYB61
<---------
At4g35610
--------->
ANAC55(2)
--------->
HSFB2a(2)
<---------
ANAC46
<---------
DEAR3(2)
--------->
ARR14(2)
--->
GT1
<---------
ZAT6
--------->
At4g35610
<---------
ARR14(2)
>
DOF2
--------->
ZAT14
<---------
DEAR3(1)
--------->
DOF5.7(2)
>
AGL15
<---------
ZAT14
<-----------
HVH21
----------------------->
TaNAC69(2)
-
AGL15
--------->
ZAT18
*
TSS
<----------
DOF2
---------->
DOF2
<---------
ANAC46
aatttccagaaaacgagcgtagtggtggtgaatcact
gactcttctctctttcgctcgtcgctgcgaaagagcatttgttttcgtttacgcgtttctttt
10661500
--------->
At5g28300
----------->
GT1
<------
MYB46(1)
-------
>>>>>>>
ZML2
<----------
DOF2
<------
MYB83
-------
<---------
HSFB2a(2)
<---------
DEAR3(2)
--------------->
AGL15
<---------
DEAR4(1)
<---------
ZAT18
<---------
ICU4
<---------
MYB46(3)
--------->
ZAT18
--------->
GLK1(2)
<---------
TOE2(3)
--------->
MYB46(2)
<---------
ANAC46
<-----------
GT1
<---------
ARR14(2)
<---------
DEAR3(1)
<---------
ANAC58
----------->
GT1
--------->
ARR14(2)
--------->
MYB55(2)
<---------
ANAC58
--------->
DAG2
<---------
CCA1(2)
<---------
AHL20(2)
-------
---
DOF2
<---------
ZAT14
---------->
DOF2
<---------
At4g35610
<---------
YAB1
<---------
ORA47(1)
tctcgttgagtgcatttgttctag
gtaaagtaacaatcttttcttctgctatatccgaattgatgatttttttttttgggtcggtgaatttttgctacgc
10661600
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AGI:
At4g19550.1
Description:
transcription activator/ transcription regulator/ zinc ion binding. similar to RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT3G09360.1); similar to unknown [Populus trichocarpa] (GB:ABK92899.1); contains InterPro domain Brf1-like TBP-binding; (InterPro:IPR011665); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812)
Range:
from: 10659391
to: 10661109
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g19560.1
Description:
CYCT1;2; cyclin-dependent protein kinase. Identical to Cyclin-T1-2 (CYCT1-2) [Arabidopsis Thaliana] (GB:Q56YF8;GB:O49474); similar to CYCT1,4, cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT4G19600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47935.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Transcription regulator cyclin (InterPro:IPR015429); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028)
Range:
from: 10661438
to: 10664726
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.