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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
<---------
WOX13(1)
<---------
AHL20(2)
<--------
HAHB4
--------->
AHL20(2)
<---------
ICU4
--------->
ANAC58
<------
ZmHOX2a(2)
--------->
AHL20(2)
--------->
ICU4
--------->
ANAC58
<---------
ARR11(3)
--------->
YAB1
--------->
ATHB12
--------->
YAB1
-----
--------->
ARR11(3)
--------->
YAB1
--------->
ICU4
--------->
WOX13(1)
---------->
DOF2
-------->
DOF2
--------->
ZAT6
--------->
ZAT6
--------->
AHL20(2)
--------->
ATHB12
-------
taaaagatcaacacaaaattcactctaataaaaaaatagcactaattggcataattaatcaaaacacgaatgcaattcatttgtaagagaataaagaaaa
10554600
--------->
LBD16
------->
TEIL
--------->
AHL20(2)
<-------
TEIL
<XXXXXXXXXXXXXXXXXXXXXXX
MIR836
<---------
AHL20(2)
<---------
AtMYB61
<---------
AtLEC2
<---------
YAB1
----------->
GT1
<---------
TOE2(3)
<---------
WOX13(1)
<-----
------>
GT1
<---------
LBD16
<---------
TOE1(3)
--------->
ATHB12
-------
--->
DOF2
<---------
AHL20(2)
--------->
MYB59
<---------
YAB1
----------->
GT1
gaaatatgtttaatttatgcggaaaatagtgtggtttaggttcaattttgtatactaattggcatgaatcaaacaaaacacaggcagtttatttggagga
10554700
<---------
ANAC46
------
----------->
TGA1
<---------
YAB1
-------
<------
ZmHOX2a(1)
------------>
CBF
-------
----------->
GT1
<---------
TOE1(2)
<---------
WOX13(1)
-------
--------->
DAG2
----------->
HVH21
<---------
ARR11(3)
-------
-
ZmHOX2a(1)
<------
ZmHOX2a(1)
<---------
TOE2(3)
<------------
CBF
------------>
CBF
--
---->
GT1
---------->
DOF2
--------->
GLK1(2)
<-------
TEIL
<---------
YAB1
---------->
DOF2
---------
aaaaaaaaaaaaaaagtttaggaggaaaaatcggtgacgcttaggttcaatatgtttatgtgctaattgatggcccatgaagcccaatatgtagcaacgg
10554800
--------->
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ATHB12
--------->
AHL20(2)
->
GAMYB
--------->
ANAC55(1)
-->
ANAC46
--------->
ANAC55(2)
-->
ANAC58
<---------
ANAC55(2)
-->
bZIP60(2)
--------->
ANAC46
-->
ANAC58
----------->
TBP
--------->
ANAC58
<------------
CBF
------->
bZIP60(2)
--------->
ANAC58
<-----------
GT1
---------->
DOF2
>
MYB52(1)
<---------
ANAC46
<-----------
GT1
<---------
AHL20(2)
<------------
CBF
cacatcatttgcctctcgtataaatctcattttcacgtaatattctaaattaattaacaagagattgagagattgagaaagagcgagagagagagagaga
10554900
<-----
--------->
GLK1(1)
<---------
YAB1
<---------
GLK1(1)
<---------
AHL20(2)
<---------
ARR11(3)
--------->
LBD16
--------->
AHL20(1)
--------->
ARR11(3)
--------->
LBD16
<---------
AHL20(2)
---------->
DOF2
--------->
ANAC46
<---------
AHL20(1)
<---------
HSFB2a(2)
------>
ZmHOX2a(2)
--------->
AHL20(2)
<---------
GLK1(2)
<-----------
GT1
<---------
LBD16
------------>
CBF
--------->
ANAC58
<----------
DOF2
<---------
ARR11(3)
<---------
At4g35610
<-----
--------->
ANAC58
---------->
DOF2
--------->
ARR11(3)
--------->
At4g35610
<-----
gcgagagcaagaaactcgagaaagatttactaaaagagcctttattctccccttgatcttcccgcgatttccttcggctgaagaacaatata
atggagcg
10555000
----------->
GT1
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
GLK1(2)
<---------
ARR14(3)
<---------
ARR14(2)
<---------
AGP1
<-----------
ARR10
<---------
DEAR3(1)
--------->
ARR14(3)
---------->
ID1
===========================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<-------
TEIL
--------->
LBD16
<---------
HSFB2a(1)
--------->
HSFB2a(2)
--------->
HSFB2a(1)
<---------
HSFB2a(2)
--------->
HSFC1(2)
=================
HOX2a_HOX2a
<---------
HSFC1(2)
--------->
CCA1(2)
--------->
At4g35610
--------->
ARR14(2)
---------->
DOF2
--------->
ANAC58
<-----------
TGA1
<---------
LBD16
XXXXXXXXXXXXXXXXXXXX>
MIR779.2
--------->
ANAC58
----
ANAC58
================
HOX2a_HOX2a
------>
ZmHOX2a(2)
----------->
RAV1(1)
----
ANAC58
------>
ZmHOX2a(1)
--------->
ATHB12
<-----------
HVH21
--------->
ANAC46
----
ANAC46
==================================
HOX2a_HOX2a
------->
GAMYB
-----
tgagacttcgtcatcttcaactcctccggaggatcttgttacatcgatgatcggaaagttcgtcgctgtcatgtctaacaacgacatacgatacgaaggc
10555100
<---------
YAB1
------>
ZmHOX2a(2)
<------
MYB83
<------
ZmHOX2a(2)
<------
MYB46(1)
--------->
CCA1(2)
--------->
MYB59
<-----------
ARR10
<-------
TEIL
<-----------------
AGL1
--------->
ARR14(3)
--------->
CCA1(2)
<---------
ARR14(3)
--------->
ARR14(1)
<---------
ARR14(2)
<---------
GLK1(2)
--------->
At5g28300
--------->
ARR14(2)
--------->
ARR14(2)
--------->
DOF5.7(2)
--------->
ARR11(3)
<-----------
GT1
--------->
ARR11(1)
----------->
GT1
<---------
ARR11(3)
<-
------>
GT1
<---------
ARR14(2)
--------->
MYB52(1)
--------->
AGP1
<-------
gttattagccttctcaatctgcaagattcgaaattaggtctccaaaacggtaacaattcgattccaaaccctctccaagatctactgtttatgattttct
10555200
<---------
ANAC46
<---------
ANAC55(1)
<-------
GAMYB
<---------
ANAC58
--------->
MYB52(2)
--------->
REM1(2)
<---------
ARR11(3)
<---------
MYB46(3)
--------->
LBD16
<---------
WOX13(1)
--------->
ARR11(3)
<---------
AtMYB61
<---------
ANAC58
<---------
ANAC55(2)
---------
DOF2
<----------
DOF2
<---------
LBD16
--------->
ANAC55(2)
----
GT1
---------->
ID1
--------->
KAN4(2)
--------->
AHL20(2)
----------->
HVH21
tcttttcaa
gttcttcatatttgtttctttggtcgttgttagaatatttccgtgaaaactatacgtttcatatatataaaacagtatcatgtgatagatt
10555300
<-------
TEIL
<---------
ARR11(3)
<---------
HSFB2a(2)
<---------
GLK1(2)
<---------
TOE2(3)
--------->
LBD16
--------->
ZAT18
--------->
HSFB2a(2)
<---------
TOE1(2)
<---------
MYB52(1)
<---------
ICU4
<-----------
RAV1(2)
<----
------->
TEIL
<---------
TOE2(3)
--------->
ICU4
--------->
ALFIN1
--------->
ZAT14
<---------
AHL20(2)
<---------
TOE1(3)
--------->
YAB1
--------->
HSFB2a(1)
<---------
ZAT14
<------
NtERF2
<---------
MYB46(3)
<---------
YAB1
<---------
ZAT6
---------->
DOF2
<
aaggcctcaaatttatgtatgcag
tcgttagggtttatggaagagaggttgagaatgataatgagcaacgagtgttccaggttcttaaagaagttcacag
10555400
-
------
<-----
---------
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<--------
P
<-------
GAMYB
-
<---------
TOE2(3)
<---------
AHL20(2)
--------->
MYB111(2)
<---------
TOE1(3)
--------->
AHL20(2)
--------->
ANAC46
--------->
MYB46(2)
----------->
GT1
----------->
HVH21
<---------
MYB52(1)
------>
ZmHOX2a(1)
--------->
MYB111(1)
-------
HVH21
----------->
GT1
--------->
TOE2(3)
<---------
GLK1(2)
--------->
MYB52(2)
---------
O2
<------
ZmHOX2a(1)
--------->
MYB52(2)
<-------
TEIL
------>
ZmHOX2a(1)
-
tcacatggtatttagaggaagtgacattaag
gttagttttcgttaattttttgggttcaagattcctcgctagtcttcttcctagttagttgcttgctgc
10555500
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AGI:
At4g19330.1
Description:
kelch repeat-containing F-box family protein. Identical to Putative F-box/Kelch-repeat protein At4g19330 [Arabidopsis Thaliana] (GB:O65704); similar to kelch repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G19250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043)
Range:
from: 10554993
to: 10558686
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.