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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
HSFB2a(2)
<---------
TOE2(2)
<---------
ANAC55(2)
<---------
ANAC58
<---------
TGA2(1)
--------->
TGA2(1)
<---------
ANAC58
<---------
ANAC46
------>
ZmHOX2a(2)
--------->
ANAC55(2)
<------
ZmHOX2a(2)
<---------
bZIP60(1)
--------->
ARR11(3)
--------->
AtMYB61
<---------
ARR14(2)
<---------
ARR14(2)
--------->
MYB46(3)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
MYB46(3)
--------->
HSFB2a(2)
--------->
ARR14(2)
------->
TEIL
--------->
bZIP60(1)
<-----------
HVH21
<---------
WRKY12
<---------
TGA2(2)
<-----
--------->
ALFIN1
<---------
MYB52(1)
----------->
STF1
--------
--------->
HVH21
----------->
HVH21
--------->
LBD16
----------->
HVH21
--------->
SPL7
---------
ID1
--------->
CCA1(2)
<-----------
HVH21
<---------
ATHB12
--------->
LBD16
-
ZmHOX2a(1)
--------->
AGP1
--------->
ANAC46
----------->
TGA1
<---------
SPL7
agcgacaagtgtgagatctacaatcgatgacagacacagtagagactaattctccgtcaatgcatccaccaatgacgtaagtttcagaaccggacgagat
8527600
<------
ZmHOX2a(1)
--------->
LBD16
<-
<---------
ARR14(2)
--
--------->
ARR14(2)
<-------
<---------
CCA1(2)
<-----------
ARR10
--------
--------------->
AGL15
--------->
LBD16
----------
----------------->
AGL2
<---------
LBD16
<---------
ANAC46
----------------->
AGL1
--------->
ARR14(2)
<---------
MYB46(3)
<---------
ANAC58
<---------
MYB46(3)
<---------
ARR14(2)
<---------
MYB52(1)
<---------
ANAC58
----
ARR11(3)
<---------
LBD16
--------->
ATHB12
<-------
GAMYB
<<<<<<<<<
RAP2.2
<-
--->
GT1
<---------------
AGL15
--------->
ICU4
<-----------
RAV1(1)
<---------
TOE2(3)
--
aatagttgttccatatccaggaattgaagggaatgatggaaccggaactaatctatggctaatctctgttgttccaaagggttttagattgagtgtgtac
8527700
---------
---------
------>
NtERF2
--------->
LBD16
------>
ZmHOX2a(2)
<---------
GLK1(1)
--------->
GLK1(1)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ARR11(3)
<-----------
GT1
<---------
ARR14(3)
<---------
TOE1(3)
<---------
RVE1(1)
<---------
AGP1
--------->
MYB52(1)
<---------
CCA1(1)
--------->
ARR14(3)
--------
At4g35610
--------->
ARR11(3)
--------->
ARR11(3)
------->
At4g35610
<---------
ARR14(2)
<---------
REM1(1)
--
ZAT14
------>
ZmHOX2a(2)
--------->
ARR14(2)
--------->
SPL7
<---------
DEAR3(1)
->
ZAT18
========================
HOX2a_HOX2a
<---------
MYB52(1)
<---------
ATERF1(1)
----->
AtSPL8
<---------
ANAC58
<---------
ARR11(3)
----------->
HVH21
<------
ZmHOX2a(2)
--------
ZAT2
<---------
ANAC58
----------->
RAV1(1)
<----------
ID1
<---------
SPL7
<---------
LBD16
------->
ZAT2
<---------
At4g35610
<------
ZmHOX2a(1)
<-----------
GT1
<---------
CCA1(2)
cagctaagggtttttgtagcttctgatctaattgcaacatagaggatattttcagtgcgacgaattactgaccgttcgatgtagatctccggcgaagcca
8527800
------->
MYC2
<-------
MYC3
--------->
At4g35610
------->
MYC3
<---------
At4g35610
--------->
ARR11(3)
--------->
ANAC58
------>
ZmHOX2a(1)
<-----------
GT1
<-------
MYC2
----------->
HVH21
--------->
ARR11(3)
------>
NtERF2
<---------------
ANT
------->
GAMYB
----------->
RAV1(2)
--------->
LBD16
<---------
ANAC58
--------->
ANAC58
----------->
GT1
----------->
GT1
<---------
ANAC58
--------->
ANAC58
<---------
TGA1a
<--------
P
<---------
LBD16
--------->
At4g35610
--------->
ANAC46
==========================
MYC_MYB
<---------
ANAC46
>
ANAC58
--------->
ARR14(2)
<---------
ANAC46
----------->
HVH21
<---------
MYB52(2)
>
ANAC58
<---------
ARR14(2)
<---------
LBD16
<---------
LBD16
--------->
ANAC58
<-----------
TGA1
ttaaacgcctgaagttcctgcagacgagtgaaatcgccgggtagtaacatctcgggacgcgtgcgaagcaactcacagcgatttcgtcatgaagtattgc
8527900
<---------
ARR14(2)
<------
NtERF2
------>
NtERF2
<------
NtERF2
<---------
LBD16
<---------
MYB46(3)
--------->
At4g35610
<---------
MYB52(1)
<---------
DEAR3(1)
--------->
LBD16
<---------
LBD16
<---------
LBD16
--------->
GLK1(1)
--------->
GLK1(2)
<---------
GLK1(1)
<---------
GLK1(2)
<---------
ARR14(2)
--------->
ARR14(2)
------->
GAMYB
<---------
SPL7
<------
NtERF2
<---------
ARR14(2)
--------->
ANAC58
=======
------>
NtERF2
<---------
ANAC58
--------->
ANAC58
-------
>>>>>>>>>
TBF1
<---------
ANAC58
--------->
ANAC46
--------
>>>>>>>>>
TBF1
<-----------
RAV1(1)
--------->
MYB52(1)
--------
cagagaagaagaagaagacgccgattgaagcagtttcttctgtggcgattctccggttattgagccaacggaactcgcggcggaacgagacat
caacgac
8528000
*
TSS
<---------
O2
---------->
DOF2
--------->
ICU4
<---------
AHL20(2)
=================
bZIP_DOF
--------->
AHL20(2)
====================
MYC_MYB
<---------
AHL20(2)
>
GAMYB
================================
bZIP_DOF
<-----------------
AGL1
->
ANAC46
--------->
CCA1(2)
<---------
TOE2(3)
<---------
CCA1(2)
<--------
->
MYB46(3)
<---------
TGA1a
---------->
DOF2
--------->
YAB1
---------->
DOF2
<------
NtERF2
aatggc
gaaagagacgggagaagaaatgattttttaaagtattaatttcttcatcaaaatgggcctataaagcccatttctctcaaataggcctcattgt
8528100
<----------
ID1
<-----------
GT1
--------->
MYB52(1)
<---------
WRKY18(1)
--------->
At4g35610
<---------
ALFIN1
--------->
WRKY12
---------->
DOF2
---------->
DOF2
---------->
DOF2
----------->
HVH21
--------->
ANAC58
----
CBF
----------->
RAV1(1)
--------->
WRKY38(1)
--------->
ANAC58
------->
TEIL
acaagagcaaaagagggcaacacataaaagaaacgacgagcatggaccattgaccagttttt
aacatgacaaacaatacagagaaagctccatgaatcac
8528200
----------->
HVH21
<---------
O2
--------->
ANAC46
=================================================
bZIP_DOF
<---------
TGA1a
<---------
ANAC46
--------->
TGA1a
<---------
YAB1
--------->
O2
--------->
YAB1
<---------
ZAT18
--------->
ATHB12
---------->
DOF2
<---------
TOE2(3)
--------->
ZAT18
<---------
ICU4
------>
ZmHOX2a(1)
<---------
TOE1(3)
<---------
ZAT14
-------->
HAHB4
<---------
YAB1
--------->
DAG2
<<<<<<
--------->
ZAT14
--------->
ICU4
--------->
ICU4
<---------
ANAC58
---------
<-----------
RAV1(1)
<---------
YAB1
----------->
RAV1(2)
<---------
ANAC58
<--------
gagcatgacactcgtaaatggtgcacacatgaccaaaacaaaatgattacgagtaactcctgattaaagagctctggcttaaggtgaacaaagtctagaa
8528300
------>
MYB46(1)
------>
MYB83
--------->
MYB46(3)
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
--------->
GLK1(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
<---------
ARR14(3)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
WOX13(1)
<------
ZmHOX2a(2)
--------->
ARR11(3)
--------->
AHL20(2)
--------->
CCA1(2)
<---------
GLK1(2)
--------->
YAB1
<----------
DOF2
<---------
ARR14(2)
--------->
ARR14(3)
<---------
ICU4
<---------
WRKY18(1)
--------->
ARR14(2)
----------->
GT1
----------->
HVH21
--------->
WRKY12
<---------
ARR11(3)
<
ZML2
---------->
DOF2
----------->
RAV1(1)
--------->
WRKY38(1)
--------->
AGP1
>
HSFB2a(2)
--------->
RVE1(1)
--------->
ICU4
<-------
TEIL
--------->
ARR11(3)
-
HSFB2a(2)
----------->
ARR10
--------->
YAB1
--------->
CCA1(2)
---------->
DOF2
----------
ctagagagagcaaaaagatcctggtgaccaacaataatcaattagctagattagatacattgacctttgcaaatgaacaaagatccagcatgtttgacat
8528400
----------->
GT1
------->
GAMYB
--------->
ZAT2
----------->
HVH21
--------->
ANAC58
<--
<---------
MYB52(2)
--------->
ANAC58
---------->
DOF2
<--
--------->
At4g35610
----------->
HVH21
--------->
At4g35610
--------
<---------
At4g35610
------->
TEIL
<---------
ZAT2
<---------
ARR11(3)
--------->
ARR11(3)
<---------
YAB1
<---------
At4g35610
--------->
GLK1(2)
->
HVH21
----------->
RAV1(2)
------>
ZmHOX2a(1)
<----------
DOF2
--------->
ARR11(3)
tgtacataagacattcagacaactgacccatgctcatcaagtcctc
ttatgaacgtgacaagactcctttcgag
ctgcaaaaatgcccaaaaatctaaag
8528500
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AGI:
At4g14905.1
Description:
kelch repeat-containing F-box family protein. similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043)
Range:
from: 8526366
to: 8528006
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g14910.1
Description:
imidazoleglycerol-phosphate dehydratase, putative. Identical to Probable imidazoleglycerol-phosphate dehydratase 2 [Arabidopsis Thaliana] (GB:O23346); similar to IGPD, imidazoleglycerol-phosphate dehydratase [Arabidopsis thaliana] (TAIR:AT3G22425.2); similar to imidazoleglycerol phosphate dehydratase [Thlaspi goesingense] (GB:AAC83458.1); contains InterPro domain Imidazole glycerol-phosphate dehydratase; (InterPro:IPR000807)
Range:
from: 8528163
to: 8530110
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.