Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->TOE1(2)                                                                  --------->GLK1(2)                                                                  --------->ARR11(3)                                                                  --------->ARR14(2)                                                                  <---------ARR11(3)                                                                  <---------ARR14(2)       ----------->GT1                  --------->ATHB12 ------>MYB83      ----------->GT1                   <---------ICU4--------->ANAC58           <----------DOF2    ---------->DOF2                    --------->MYB46(3)------>MYB46(1)        <---------ANAC58 ---------DOF2     ---------->DOF2--------->ANAC58    --------->ANAC58          <---------ANAC58----- ------------->AGL15    <----------DOF2<---------ATHB12<---------MYB59        ------->TEIL --------->REM1(1) --------------AGL15--------->DAG2--------->ANAC58    --------->ANAC46--------->LBD16   --------->TOE2(3)   cctttaaaaagataaaaatcaaaaagcttttcagagaggcaaccattgctatccaaacccaacttcaaaatctgggaatgtagctttcttccttcatcta  7942500                                                                           --------->ANAC58                                                                           --------->ANAC55(1)                                                                           --------->ANAC46                                                                           --------->ANAC58                                                                          --------->LBD16                                                     <------MYB83         <---------LBD16                             --------->ANAC58        <------MYB46(1)     <---------ALFIN1                             --------->ANAC58       --------->MYB59     <---------REM1(2)                         --------->HSFB2a(2)    --------->ATHB12   <---------GLK1(2)                -                      ------>ZmHOX2a(1)         <---------ICU4     --------->ARR14(2)               <         ---------->ID1  <---------HSFB2a(2)   <---------YAB1    --------->ANAC46                   < ----->DOF2          --------->TOE2(3)         --------->ICU4   --------->LBD16          <----------DOF2   aagacccatttgtcttcaaacatccttcaagaagccatttcaaagtttgatgattaggtcgaattccacgattctccacggaatcaattctcttttcttg  7942600                                                           ---------->DOF2                                                        ----------->RAV1(1)          ------>ZmHOX2a(1)                          --------->PCF5         --------->TOE2(3)  ---------->DOF2          <---------TCP15(1)    <-------TEIL           --------->CCA1(2)         <---------TCP20 -------->HAHB4           --------->ARR11(3)        <-----------HVH21 --------->ATHB12         <---------ARR14(2)      ------>ZmHOX2a(1) -------->ICU4   --------->CCA1(2)              ====================RAV            ----------->GT1 ---------ATHB12--------->ARR11(3)              ----------->RAV1(2)          <------ZmHOX2a(1)------- ---------YAB1  <---------ARR11(3)--------->At4g35610--------->PCF2    ---------->DOF2<-----------GT1   aaatgattcatcctcagagatataaacagatatagcagcaaaactagctctcctggtcccacaaagagtctacaaaagaggagcatagttacaaaatcag  7942700                                                              ---------->DOF2                                                             <------ZmHOX2a(1)                                                            --------->ANAC46                                                     <---------ICU4                                                     --------->YAB1                                <-                                                    <---------ATHB12                   <---------TOE2(1)                                                    --------->ICU4                     <---------ANAC46                                                   --------->ANAC58                    <---------TOE1(1)                                                   --------->ANAC58               <---------At4g35610        --------->ANAC58                       --------->ANAC58                   --------->At4g35610      ---------->DOF2                          --------->ANAC58       <---------ARR14(2)   <------ZmHOX2a(1) -->YAB1--------->ANAC58      --------->ATHB12 --------->ANAC46       --------->ARR14(2) --------->ANAC46   aaccatgttaaagcaatggagtttcaatgggatgatttagagaacaagaacgcaagcattacaggaaagacagttctggtcttgagcttacgaggaacac  7942800                                                                               --------->AHL20(2)                                                                               <---------AHL20(2)                                                                               --------->AHL20(1)                                                                               <---------AHL20(1)                                                                               --------->ARR11(3)                                                                               <---------ARR11(3)                                                                              --------->AHL20(2)                                                                            ------>MYB46(1)                                                                          ------->GAMYB                                                                         --------->MYB46(3)                                                                        ------>MYB83                                                                        ------>MYB46(1)                                                                        -------->P  <---------AHL20(2)                                                                      --------->AtMYB61                                                  ------>ZmHOX2a(1)   <---------MYB111(1)         ---                   --------->ANAC58              --------->TOE2(3)   --------->DEAR3(2)           <--                   --------->ANAC58            ------>ZmHOX2a(1)     <---------MYB55(2)           ---                  --------->SPL7           <---------ARR14(2)        --------->MYB46(3)           <--      ----------->GT1                      --------->ARR14(2)       ------->TEIL<---------AHL20(2)--- --------YAB1    <------ZmHOX2a(1)    --------->TOE2(2)     ---------->DOF2 ------>MYB83     --------   catgaatgaagataaatgaggacgacactgagcgaagaaacatgggttcctccttagaatgccaaagacgaaccaaccaaatatatttattcatgtggaa  7942900                                                   <---------ICU4                                          <---------TOE2(3)    <---------YAB1                        <---------TOE1(3)                          <---------YAB1   <---------ARR11(3)                    ---------->DOF2                         --------->AHL20(1)   --------->ARR11(3)                   <---------AHL20(2)    <------ZmHOX2a(1) <---------ICU4 ------>ARR11(3)                    --------------->AGL15    ----------->GT1   --------->ICU4 -------ARR11(3)                    ==============================MADS_MADS  <---------ICU4         - ------>AHL20(1)                  ------------>CBF<---------------AGL15      <---------AHL20(2)    <- -------AHL20(1)                 <-----------GT1  --------------->AGL15   --------->YAB1         <--- ------>ICU4               <---------AtMYB61     <-----------------AGL2--------->TOE2(3)         ---- --->GT1             <---------AtMYB61 --------->AHL20(2)   ----------->GT1 --------->AHL20(2)-------   aatattatcttcgaaattttgttttggttttggtttttcaatttaaagtttactaattaggggaggaaaaattccataataaatattatgtttttttcat  7943000                                                                                --------->AHL20(2)                                                                                <---------AHL20(2)                                                                              --------->AHL20(2)                                                                              <-----------TBP                                                                            <-----------TBP                                                                            --------->AHL20(2)                                                                            <---------AHL20(2)                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)                                                                          <-----------TBP                                  <---------MYB46(2)                    --------->AHL20(2)                                  --------->DEAR3(1)                    <---------AHL20(2)                                 --------->ANAC58                       <-----------TBP                                 --------->ANAC58                     <---------AHL20(2)                                 --------->ANAC46                     <-----------TBP                          <---------------AtSPL8                    --------->AHL20(2)                          --------->DAG2                            <---------AHL20(2)          <---------AHL20(1)  <---------ZAT14                       <-----------TBP          <---------AHL20(2)  --------->ZAT14                     <---------AHL20(2)        <-------- -------->YAB1           ---------->DOF2<------------CBF          <-----------TBP <---------AHL20(2) --------YAB1       <------------CBF------>MYB83                <-----------TBP <-----------TBP  <--- ------ICU4      --------->ANAC55(2)------>MYB46(1)          --------->TOE2(3)<---------AHL20(2) ---- ----->YAB1    <-----------GT1--------->ZAT18          <-----------GT1--------->AHL20(2) <---------YAB1 -->YAB1  --------->AHL20(2)  <-------TEIL       ------------>CBF --------->AHL20(2)   --------->YAB1   aatcatacataaaaaatttacatattgaaaagtacaccgaactattgtttactcaatttacaacctatatatatatatatatatatatatgatgatgtta  7943100                  ------->MYC2                  <-------MYC3                                                                      <               <---------ANAC58                        <---------ANAC55(2)                     <-----     ----------->GT1                              <---------YAB1                               <----- -YAB1         <---------ANAC58                <---------YAB1                                  ------ ------ANAC55(2)  <-------MYC2               --------->YAB1  ---------->DOF2                  ------- ----->ANAC55(2)  ------->MYC3              <---------YAB1 <---------YAB1   <---------ANAC55(2)------   agtgagagcgtttaatagcatgtgtaaagttttgggtttagtatctatgatgatgttaagtatgaaagatagctaatctcgtaagagtttagaagagtgg  7943200                                                                                         <---------ANAC58       ----------->GT1                                                                   <---------ANAC46     <---------GLK1(1)                                                                 <---------MYB46(3)   <------ZmHOX2a(1)                                                                   --------->MYB55(2) -----------RAV1(2)                                         --------->AHL20(2)     --------->ALFIN1 ----ZAT18                                                  --------->YAB1 <---------AHL20(2) ----ZAT14                                              <---------YAB1    --------->AHL20(2) --->ZAT14                                            <-----------GT1     <---------AHL20(2) -->ALFIN1                                    ----------->GT1         --------->AHL20(2) <---------ANAC58 --->ZAT18              <---------ANAC46   <---------At4g35610    ----------->GT1  <---------AtMYB61   agtcaggaaatgtgaatcagtgaatggagtatgaagtagggtttgtgctggtaatattacaataaaactcgtataaataaatgagatggtggtttgtgtt  7943300                                                                          <---------MYB46(3)                                                                          <---------ANAC58                                                                     <---------------AtSPL8                                        --------->AHL20(2)    <-----------------AGL3                                        <---------AHL20(2)   <-------TEIL <---------ANAC58          -                                       --------->AHL20(1) <------MYB46(1) --------->MYB52(2)<--------                            <---------ANAC58              <------MYB83   --------------->AtSPL8<<<<<<                            <---------ANAC58             --------->MYB46(2)                 ---------                            <---------ANAC46             --------->MYB59 <-------TEIL       ---------                   <---------At5g28300 <---------AHL20(1)--------------->AtSPL8             <--------               <---------ARR14(2)      <---------AHL20(2)<---------------AtSPL8          --------->GLK1(2)               --------->ARR14(2)      --------->AHL20(2)--------->MYB111(1)          --------->ARR14(2)         <---------At4g35610<---------ANAC55(1)    <---------ZAT14<---------AHL20(2)  --------->ARR11(3) <----------DOF2  <-----------GT1<-----------GT1 <---------YAB1  --------->AHL20(2)   <---------ARR11(3)   tctctttgttcagcccatattcactgtatttcgtgtaacaatttatttgtgactatagtttggtacattatatggttcgttccatctagatattctagaa  7943400  Previous    Next  AGI:  At4g13650.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G09950.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99524.2); similar to hypothetical protein OsJ_035025 [Oryza sativa (japonica cultivar-group)] (GB:EAZ20816.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23492.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 7938963    to: 7942894    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.