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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ZAT6
<-----------------
AGL2
<-----------------
AGL3
<---------
SPL7
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------------->
AtSPL3
<---------------
AtSPL3
<---------
ARR11(3)
<---------
MYB46(3)
<---------
ANAC58
<---------
ANAC46
<---------
MYB52(1)
---------->
DOF2
<---------
ANAC58
<---------
TOE2(3)
--------->
MYB59
------>
ZmHOX2a(1)
----------->
GT1
<---------
ANAC46
--------->
ARR11(3)
--------->
ATHB12
ctccttctaacacagataaagaagtaacatgaagaatgacttagatagataggcttgagatcgtactgtttgtggtttgtttagtgattcggtagatggt
6563900
--------->
ZAT6
<---------
GLK1(2)
<---------
WOX13(1)
----------->
GT1
<---------
ARR11(3)
<---
<---------
AHL20(2)
<---------
YAB1
--------->
MYB52(1)
----
--------->
AHL20(2)
--------->
ANAC58
<---------
AtLEC2
<---------
AHL20(2)
<---
--------->
AHL20(2)
--------->
ANAC58
<---------
ARR14(2)
<---------
AHL20(2)
--------->
ANAC46
--------->
ARR11(3)
--------->
ANAC46
--------->
ARR14(2)
--------->
AHL20(2)
--------->
ZAT6
<---------
ARR11(3)
<-----------
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<-----------
GT1
ggaagatttaattgaactctatccaattttcacgacattatagattgtagaaaatttgcattaacagattttaaattgattttttttttcactaaacata
6564000
--------
<-------
<----------
DOF2
<-------
<---------
ICU4
<---------
AHL20(2)
--------->
ICU4
<---------
AHL20(2)
--------->
ANAC58
--------->
AHL20(1)
--------->
AHL20(1)
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
GLK1(1)
-
--------->
AHL20(2)
<---------
AHL20(2)
--------->
GLK1(1)
--
<---------
AHL20(2)
<---------
ANAC58
--------->
ARR11(3)
<---
------
YAB1
<-----------
GT1
<---------
ANAC58
<---------
TOE2(3)
<-------
----->
AHL20(2)
--------->
ANAC46
--------->
ARR11(3)
<---------
TOE1(3)
--------
------
AHL20(2)
--------->
ANAC58
<---------
ARR11(3)
<---------
MYB52(1)
<---------
ARR11(3)
<----
taattgaagaaatttattacaagtcatctttacttgaaagattttattactaaaaatcccgtttagtttatagttttaagatttcccaaatttaatattt
6564100
--------------->
AtSPL8
<---------------
AtSPL8
----------->
RAV1(1)
<---------
YAB1
->
AHL20(1)
<---------
ATHB12
--
ARR11(3)
------>
MYB46(1)
--
AHL20(1)
------>
MYB83
-------->
LBD16
------->
GAMYB
------->
ANAC46
<---------
MYB59
--------->
TOE2(3)
----
--------
GT1
--------->
MYB46(3)
--------->
TOE1(3)
------
--
ICU4
--------->
ANAC58
<---------
MYB59
<--------
->
ARR11(3)
<---------
TOE2(3)
--------->
AtMYB61
<-----------
GT1
<--------
-------
GT1
------>
ZmHOX2a(1)
--------->
ANAC58
--------->
ICU4
<---------
DAG2
tccccaacaatttgtttaatactcctaatttagatttgttaatgcaaccaaacaatatgagtacttatttacaaaacctaaatactacaggtaccttttc
6564200
<-----------
HVH21
--------->
ANAC46
<-------
-------->
CBF
--------->
MYB46(3)
---->
ID1
<-----------
GT1
<--------
--
DOF2
------>
ZmHOX2a(1)
<---------
CCA1(2)
*
TSS
<------
NtERF2
---
-
DAG2
<<<<<<<<<
TBF1
---------->
DOF2
<---------
YAB1
<--------
gcaatttcccaaaactaaacacactcttcttcttcctcccatagaaacacaaaagccctaaatctcattttctt
attacccgtcggagtgaa
atgctttc
6564300
--------->
ANAC46
------>
MYB83
--------->
HSFB2a(1)
--------->
TOE1(3)
<---------
ARR11(3)
---------->
DOF2
--------->
ARR11(3)
------>
MYB46(1)
<---------
YAB1
--------->
ARR14(2)
------>
MYB83
---
DOF2
--------->
YAB1
<---------
ARR14(2)
<---------
MYB59
-
ANAC58
<---------
ICU4
<---------
CCA1(2)
------>
MYB46(1)
------->
DOF2
--------->
YAB1
<----------
DOF2
<---------
At4g35610
--------->
MYB46(3)
--
-
ANAC58
<----------
DOF2
--------->
TOE2(3)
<---------
CCA1(2)
--------->
AtMYB61
gaaagcagcaagagagctttcatcatcaaagcttaaacctttattcgctcttcatctctcttccttcaaatcttccatacccactaaaccaaacccttct
6564400
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ANAC58
<---------
ANAC58
--------->
AtMYB61
--------->
ICU4
<---------
ALFIN1
------->
GAMYB
<-----------
ARR10
--------->
MYB46(3)
--------->
DEAR3(1)
<---------
ALFIN1
--------->
RAP2.6(2)
--------->
TOE2(3)
--------->
ANAC46
<---------
ARR11(3)
--------->
MYB46(3)
---------
--------->
ARR11(3)
<---------
ARR14(2)
---------
<---------
CCA1(2)
<---------
ARR11(3)
<---------
ANAC46
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
------>
NtERF2
--------->
ARR11(3)
<-----------
GT1
<<<<<<<<<
TBF1
------>
ZmHOX2a(1)
---->
ZmHOX2a(1)
--------->
ANAC46
--------->
ARR14(2)
<-----------
GT1
---------->
ID1
<--------
cctccttcatatctcaatccccaccacttcaacaatatctcaaaaccgccatttttgcgtttctactcttcttcttcgtcctctaatctccttccgctaa
6564500
----------->
GT1
--------->
CCA1(2)
--------->
YAB1
<---------
GLK1(1)
>
LBD16
<---------
ATHB12
<---------
TOE2(2)
>
At4g35610
--------->
WOX13(1)
<-----------
RAV1(2)
-
At4g35610
--------->
TOE2(3)
<---------
MYB52(1)
<-------
TEIL
--------->
LBD16
acagagatgggaattacaacgatacaacttcaatcacaatctccgtttgcccaggttgtggagttcatatgcaaaactcaaacccaaaacatccaggttt
6564600
<---------
CCA1(2)
--------->
ANAC58
--------->
ANAC46
------>
ZmHOX2a(2)
--------->
At4g35610
--------->
bZIP60(1)
<---------
bZIP60(1)
------->
TEIL
<---------
ALFIN1
--------->
YAB1
<------
ZmHOX2a(1)
<---------
At4g35610
<---------
ATHB12
------->
GAMYB
<---------
CCA1(2)
--------->
ANAC58
--------->
WOX13(1)
----------->
RAV1(1)
--------->
ATHB12
<---------
ARR11(3)
<-------
TEIL
--------->
MYB46(3)
=============================
HOX2a_HOX2a
<---------
AHL20(2)
cttcatcaaaccatcaacagagaaacagaggaacgatttgaatcttcgtgatctcacacccatctctcaagagcctgaatttatagattcaatcaaacga
6564700
--------->
YAB1
<---------
ATHB12
------>
MYB46(1)
<------
MYB46(1)
------>
MYB83
<---------
MYB46(3)
--------->
WOX13(1)
--------->
ATHB12
--------->
MYB46(3)
--------->
MYB46(3)
<---------
MYB52(1)
--------->
WOX13(1)
--------->
ATHB12
------->
TEIL
<---------
ARR11(3)
<-----------
HVH21
<---------
YAB1
<---------
AGP1
--------->
ICU4
<-------
TEIL
<------
MYB83
gggtttatcattgaaccaatcagtagttctgacttaaaccctagagatgatgaaccatcagattcaagaccattggtttgtgctaggtgtcattcactta
6564800
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AGI:
At4g10620.1
Description:
similar to GTP binding [Arabidopsis thaliana] (TAIR:AT3G57180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22017.1); contains domain SSF52540 (SSF52540); contains domain PTHR11089 (PTHR11089); contains domain PTHR11089:SF3 (PTHR11089:SF3); contains domain G3DSA:3.40.50.300 (G3DSA:3.40.50.300)
Range:
from: 6564275
to: 6566500
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.