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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<--------
P
<---------
MYB52(1)
--------->
ARR11(3)
<---------
ARR11(1)
--------->
ARR14(2)
<---------
ARR11(3)
<---------
ARR14(2)
<---------
CCA1(2)
--------------->
AGL15
---------->
DOF2
<---------------
AGL15
<xxxxxxxxxxxxxxxx
smallRNA(i)
----------------->
AGL2
--------->
ANAC58
----------------->
AGL1
--------->
ANAC58
----------------->
AG
---------->
DOF2
--------->
SPL7
<-----------------
AGL3
--------->
ETT(2)
--------->
ZAT18
<-----------------
AGL2
------
RAV1(1)
----------->
GT1
<---------
MYB52(1)
--------->
HSFB2a(2)
<-----
->
YAB1
----------->
GT1
<---------
ZAT18
<----------
DOF2
<---------
HSFB2a(2)
------
ttgtcgaaaggagtaaaattgtaaaacgagagtgcatccgttcgcaaagctttagtaacaatagtctgttccataaaccatatctggtagtcatgggatg
5957700
<
--
---------->
DOF2
---
<------
ZmHOX2a(2)
<--
<-----------
GT1
========================
--------->
YAB1
<---------
ARR14(2)
--------->
ANAC58
<---------
DEAR3(2)
<---------
YAB1
--------->
ARR14(2)
----------->
TGA1
--------->
At4g35610
--------->
ICU4
<---------
GLK1(2)
----------->
GT1
<--
----------->
HVH21
--------->
YAB1
--------->
YAB1
<---------
ARR14(2)
--------->
ANAC46
------
RAV1(1)
<---------
At4g35610
<---------
ZAT6
<---------
ATHB12
--------->
ARR14(2)
--------->
ANAC58
--->
ALFIN1
---------->
CDC5
----------->
GT1
<---------
ICU4
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
ttgctctcacagactcagcgtcgtttcggaccgagaaattagtgataattatccactcatactcatattctcgtattcgatcaaagtaaaatgacgcaag
5957800
<-----------
GT1
--------->
YAB1
--------->
AHL20(2)
<------
ZmHOX2a(1)
--------->
AHL20(2)
<---------
ANAC46
<---------
ATHB12
<---------
O2
<---------
ATHB51
-
------
NtERF2
--------->
ANAC46
---------->
DOF2
<---
---->
NtERF2
------>
NtERF2
<---------
AHL20(2)
<---------
ANAC55(2)
----
-------->
HVH21
--------->
HSFB2a(2)
------>
MYB83
<---------
ANAC46
-------
--------
ID1
<---------
LBD16
--------->
REM1(1)
--------->
ANAC58
<---------
AHL20(2)
===========
HOX2a_HOX2a
<---------
HSFB2a(2)
------>
MYB46(1)
--------->
ANAC58
--------->
AHL20(2)
-------
DEAR3(1)
--------->
ATHB12
--------->
ANAC46
<---------
AHL20(2)
<----------
ID1
<---
gcgacgaggaatggtagccttgattcgggaacggggacc
ctacaccaaataattttaactatatacttgcaagttatgtgaaagaaacaaaattaaacat
5957900
<---------
At5g28300
<---------
ARR11(3)
--------->
ARR11(3)
--------->
AHL20(2)
<---------
DAG2
<---------
AHL20(1)
<----------
DOF2
--------->
AHL20(1)
----------->
RAV1(1)
<---------
AHL20(2)
----------------->
AGL1
<------
NtERF2
<xxxxxxx
-------->
ANAC46
------>
ZmHOX2a(2)
------>
NtERF2
--------->
ANAC58
------
GLK1(2)
<---------
At4g35610
--------->
PCF2
--------->
ANAC58
----->
ARR14(2)
--------->
At4g35610
--------->
LBD16
<-----------
HVH21
-->
YAB1
<-----------
GT1
--------->
ICU4
--------->
At4g35610
<<<<<<<<<
TAC1
--------->
ANAC46
------
ARR14(2)
<---------
MYB52(1)
------>
NtERF2
<---------
LBD16
--------->
ZAT6
<xxxxxxxxxxx
attcgcaatatattac
cgtttgatctgccaatatgaggcccagtttgaactcatccggtgccacaaactttttgaacactgtcacaacaaaaacgcaaat
5958000
--------->
ZAT18
<---------
ZAT18
<---------
DEAR3(1)
--------->
ALFIN1
<---------
ANAC46
<---------
YAB1
---------->
DOF2
<----------
DOF2
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
--------->
TOE2(3)
<---------
PCF2
--------->
YAB1
--------->
GLK1(1)
<---------------
AGL15
--------->
MYB46(3)
<---------
GLK1(1)
--------------->
AGL15
<---------
xxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ARR11(3)
------>
NtERF2
<---------
ANAC58
xxxxxxxxxxxx
smallRNA(se3)
--------->
YAB1
*
TSS
--------->
MYB52(1)
<---------
ANAC58
agtccatccactgatagtcggacaaagttcggaaacagaatgatatccatccat
gttgacaaacgacgacttcctttattagtggggtgggctctttttt
5958100
<------
<xxxxxxxx
==========
--------->
TGA1a
<---------
O2
<---------
ZAT2
<------
MYB46(1)
--------->
ZAT2
<------
MYB83
----------
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
----------->
GT1
----------->
HVH21
<---------
At4g35610
<---------
ANAC46
--------->
AHL20(2)
--------->
ATHB12
--------->
O2
----------->
GT1
------>
ZmHOX2a(1)
------>
NtERF2
--------->
At4g35610
<---------
YAB1
<------------
CBF
--------->
YAB1
--------->
ANAC46
------>
NtERF2
<------
ZmHOX2a(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
ANAC46
--------->
ANAC46
-
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
AHL20(2)
<---------
YAB1
<---------
ALFIN1
ttggataggatgaaatatgaatggtgtaaaatcgattgtaatcctgtcttaaataatattccaaacgacgcgacgattggtactcgcagtgccacctgtc
5958200
<---------
ANAC58
<---------
ANAC58
--------->
ATHB12
--------->
WRKY38(1)
<---------
ANAC46
--------->
At4g35610
------->
GAMYB
<---------
At4g35610
----------->
HVH21
-------->
ZAP1
<---------
MYB52(2)
>>>>>>>>>>
WRKY11
--------->
MYB46(3)
>>>>>>>>>>
WRKY6
--------->
MYB52(1)
--------->
At4g35610
--------->
REM1(2)
------->
TEIL
--------->
ANAC58
-----
HVH21
<---------
At4g35610
--------->
LBD16
<-----------
RAV1(2)
--------->
ANAC58
xxxxxxxxxxxxxxx
smallRNA(se3)
------>
NtERF2
--------->
WRKY38(1)
<---------
TOE1(2)
=====================
MYC_MYB
<---------
bZIP60(1)
----------->
HVH21
<---------
TOE2(1)
->
RAV1(2)
----------->
RAV1(2)
--------->
bZIP60(1)
--------->
WRKY12
<---------
TOE1(1)
--------->
MYB46(3)
actgctaatatttcaactgacgcgttgattgtgatgccacccgtgtatatagttgacccagatgaacctgttgtactaggtttgccaaacaacgactagt
5958300
<-----------
RAV1(1)
----
--------->
GLK1(2)
<------
ZmHOX2a(1)
--------------->
AGL15
<---------
ICU4
<--------
------->
TEIL
<---------
YAB1
<---------
YAB1
<-----------
ARR10
<---
<xxxxxxxxxxxxxxxx
smallRNA(i)
<-------
GAMYB
--------->
TOE2(3)
--------->
LBD16
---------->
DOF2
tcgtagttgaacctgttgaactatgtttggcaattctgttgaactaaaaaacttaactatgcttaaaaattccgaaaacacaaatctaaacacaaaggat
5958400
--------->
YAB1
<---------
DAG2
------->
TEIL
--------->
ANAC58
<---------
WOX13(1)
--------->
LBD16
--------->
ANAC46
<-----
----->
KAN4(1)
<---------
ETT(2)
--------->
HSFB2a(2)
<----------
DOF2
--------
-
TOE2(3)
<-----------
GT1
<-----------
GT1
--------->
ANAC58
--------
------
KAN4(1)
<-----------
HVH21
<---------
HSFB2a(2)
---------->
DOF2
----------
tgttcttaattgaacctgtcgaacaatatttgacaattccgagaaacacaaatttacacacaaagactttatcgtagttgaacttcttgtactagttgac
5958500
<---------
MYB46(3)
--------->
ATHB12
<---------
ICU4
--------->
ICU4
<---------
YAB1
<---------
ALFIN1
--------->
YAB1
--------->
AtMYB61
<---------
ICU4
<---------
ALFIN1
--------->
WOX13(1)
--------->
AtMYB61
--------->
TOE2(3)
------->
GAMYB
<----------
DOF2
<---------
TOE2(3)
--------->
MYB46(3)
<---------
CCA1(2)
<----
<---------
TOE1(3)
<---------
MYB55(2)
--------->
ANAC46
--------->
ABI4(2)
--------->
MYB52(1)
<---------
MYB111(2)
------->
MYC3
------>
NtERF2
<---------
DOF5.7(2)
<-----------
RAV1(2)
<-------
MYC3
<---------
RAP2.3(1)
------------------
TaNAC69(2)
<------
NtERF2
--------->
ANAC58
<---------
DEAR3(1)
<
->
WRKY12
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
O2
<---------
YAB1
<---------
RAP2.3(3)
--->
HVH21
<---------
ATHB12
--------->
At4g35610
--------->
ANAC58
<----------
DOF2
<-----
------------->
TaNAC69(2)
<---------
At4g35610
--------->
bZIP60(1)
<---------
YAB1
<---------
DEAR3(1)
gagttaacg
tcaatcatcattggtttcaggctgcaaccacctctccaagttgatgccacgcgtagctttgttattagtcttctttcggcgcttctcacct
5958600
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AGI:
At4g09400.1
Description:
transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33230.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)
Range:
from: 5953223
to: 5958054
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g09410.1
Description:
transposable element gene. Mutator-like transposase family, has a 1.4e-40 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Range:
from: 5958510
to: 5961073
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.