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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----------
DOF2
<---------
ZAT18
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
<---------
ATHB12
----------->
GT1
--------->
At4g35610
---------->
DOF2
--------->
TOE2(3)
-
---------->
HVH21
<---------
At4g35610
---------->
ARF1
<---------
ZAT6
--------
aactgatggagtctggaggtagagtcttctcccaatggtgtgctttgtctcccaaagagaagggaaatagtcttaacttaaacccatcttcagtaacacc
4747900
--------->
At4g35610
<---------
At4g35610
--------->
ZAT2
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<--------
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<------
ZmHOX2a(2)
--------->
At4g35610
<---------
TOE1(2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ANAC58
-------->
YAB1
--------->
YAB1
--------->
AtLEC2
<---------
ANAC46
->
ZAT6
<---------
At4g35610
--------->
ICU4
<---------
AtLEC2
<---------
ANAC58
attgatattcagctacagaccctatcaaagctgtcaagatggtccaaggggtcttccatggaaaaaccatgaaatttgtttccttggatcatggagatga
4748000
<------
NtERF2
------>
NtERF2
<
--------->
ALFIN1
<
<-------
GAMYB
xx
--------->
ATERF1(1)
<-
<------
NtERF2
<---------
ANAC58
<-----
<---------
ATERF1(1)
<---------
ANAC46
<-----
<---------
RAP2.3(1)
<---------
ANAC58
<-----
<---------
MYB46(3)
<---------
ICU4
<---------
ATHB12
<---------
DEAR3(1)
--------->
ICU4
------>
NtERF2
<--
--------->
ATHB12
<---------
ANAC46
<---------
YAB1
--------->
DEAR3(1)
-
At4g35610
---------->
DOF2
<---------
DREB2C(2)
<-----------
RAV1(2)
--------->
At4g35610
gaccgctcttgatttcaaagttgatattttgaactggcggtggcactatcccttgcctctggtgatgattccttggggcatcaccagcgccaatgtttct
4748100
<---------
CCA1(2)
<------
MYB83
<------
MYB46(1)
--------->
ALFIN1
xxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
---------
WOX13(1)
<---------
ANAC46
--------
P
<---------
ANAC46
<----------
DOF2
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
ZAT2
<-
------
GAMYB
<------
MYB83
------->
TEIL
----------->
RAV1(2)
<---------
DAG2
----
ANAC58
<------
MYB46(1)
<---------
At4g35610
<----------
DOF2
----
ANAC46
--------->
MYB46(2)
------>
ZmHOX2a(2)
<---------
ANAC58
----
ANAC58
--------->
MYB111(1)
---------->
ID1
--------->
At4g35610
<---------
ANAC58
-------
MYB46(3)
<---------
MYB46(3)
<----------
DOF2
<---------
ZAT2
<----------
DOF2
tggttgatcaacattaggtgggtcttgtatctcaactcctttgttctattgatccatagcagctggtcttttttgatcacagtatgcctttgctttttgt
4748200
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
--------->
AGP1
<---------
ARR11(3)
<---------
GLK1(2)
--------->
ARR11(3)
<---------
ARR14(2)
<---------
At4g35610
<---------
ZAT14
--------->
ALFIN1
--------->
ALFIN1
<------
MYB83
------>
ZmHOX2a(1)
--------
<------
MYB46(1)
---------->
DOF2
--------
--------->
MYB111(1)
*
TSS
<------------
CBF
---
<--------
P
<---------
GLK1(1)
<---------
AtLEC2
<---------
At4g35610
--------->
DAG2
<---------
At4g35610
<---------
ANAC58
--------->
At4g35610
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
AtLEC2
--------->
ANAC58
--------
MYB52(2)
--------------->
AGL15
----------->
ARR10
<---------
ANAC58
--------->
ANAC58
aactcacgagctattatgtcaattctatctttgaaaggtagtaggtgtgcagatcctttggaccgagtttgcat
gcacaaagaattggcaagcagacgaa
4748300
<---------
AHL20(2)
<---------
AHL20(2)
<-----------
TBP
------------>
CBF
-----
--------->
AHL20(2)
------
<-----------
TBP
<---------
YAB1
------
<---------
AHL20(2)
<-----------
GT1
------->
GAMYB
<---------
ARR11(3)
<---------
AHL20(1)
---------
--------->
ARR11(3)
<---------
AHL20(2)
---------
--------->
ARR11(3)
<-----------
TBP
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
->
ANAC58
<---------
ARR11(3)
--------->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
->
ANAC58
<-----------
GT1
---------->
DOF2
--------->
AHL20(2)
----------->
GT1
<---------
ATHB12
------>
AHL20(2)
----------->
GT1
------>
ZmHOX2a(2)
--------->
AHL20(1)
----------->
RAV1(1)
------
aaaaatgtgtttttaacttgagtaatgtaaaagaacttgatcttatttttttatatatatattttgaatgtaacaatgcaacaatgaattggcaacgacg
4748400
<---------
ICU4
<---------
YAB1
--------->
ICU4
--------->
YAB1
<---------
MYB46(2)
----------->
GT1
--------->
ANAC46
--------->
ALFIN1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
ANAC58
->
NtERF2
--------->
ANAC46
<---------
ANAC58
--->
ANAC58
<-----------
GT1
<-----------
RAV1(2)
--->
ANAC46
<------
MYB83
----------->
RAV1(1)
<--
>
MYB46(3)
<------
MYB46(1)
<---------
GLK1(1)
<---------
At4g35610
---
>
DEAR3(1)
<---------
TOE2(3)
----------->
GT1
--------->
At4g35610
<--
--->
ANAC58
--------->
MYB59
<---------
ANAC46
--------->
ZAT6
<---------
REM1(1)
---
ccaaattgataattaggtttttacgcctaactatgttgtgaaatttgatttccccttaaacactaacatgttgatgcagcaacagggggtgtcaattcag
4748500
<---------
ANAC58
--------->
ATHB12
<xxxxxxxxxxxxxxxx
smallRNA(i)
<--------
ATHB1
--------->
ANAC58
-------->
HAHB4
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
ICU4
--------->
ANAC58
--------->
ICU4
<---------
ANAC58
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
YAB1
--------->
AHL20(2)
<---------
ANAC58
--------->
AHL20(2)
<---------
AHL20(2)
<---------
WOX13(1)
--------->
ANAC58
<---------
ANAC58
----------->
GT1
<---------
YAB1
--------->
YAB1
--------->
ANAC58
--------->
MYB59
-------->
P
--------->
At5g28300
<---------
ARR11(3)
--------->
WRKY18(1)
<---------
WOX13(1)
------>
MYB83
-------
ZAT18
<---------
ATHB12
<---------
MYB52(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------
------>
ZAT18
--------->
ANAC58
--------->
ANAC46
<---------
AHL20(2)
------>
MYB46(1)
-------
ZAT14
--------->
ANAC58
--------->
ANAC58
--------->
AHL20(1)
----------->
RAV1(1)
------>
ZAT14
--------->
WOX13(1)
--------->
ANAC58
--------->
YAB1
--------->
MYB46(3)
tccactgtaattgctagcaatcaagatgtgtacataagcaactaagtcaagccaaattataatgattgggtccagtagaaccaacatgtgataaatttaa
4748600
----------->
GT1
<---------
ANAC55(2)
<---------
LBD16
<---------------------
WRI1
<---------
ANAC55(2)
--------->
CCA1(2)
--------->
ANAC55(2)
--------->
ARR11(1)
----------->
GT1
<---------
ARR14(2)
--------->
YAB1
<------
MYB83
<--------
ATHB1
<------
MYB46(1)
--------->
ICU4
<---------
ANAC46
<---------
ATHB12
--------->
MYB55(2)
--------------->
AGL15
<---------
MYB46(3)
<---------------
AGL15
--------->
ALFIN1
----------------->
AGL1
--------->
ATHB12
<-----------------
AGL3
<---------
AHL20(2)
--------->
ARR14(2)
--------->
ZAT18
--------->
YAB1
<---------
ATHB12
<---------
ZAT18
--------->
AHL20(2)
--------->
WOX13(1)
---------->
DOF2
---------->
DOF2
<-----------
RAV1(2)
--------->
AHL20(2)
----------->
ARR10
->
AHL20(2)
<---------
ATHB51
--------->
At4g35610
<---------
AHL20(2)
<---------
MYB46(3)
gaactaaagtgcaataataggtaactcaacaggtgaatgaaataacaatagaataaaattgcaatcagtgggtggatacggataaatcaaagaagaacag
4748700
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
<---------
MYB52(2)
--------->
At4g35610
<---------
At4g35610
--------->
ANAC55(2)
--------->
ARR14(2)
<---------
WOX13(1)
----------->
GT1
----------->
GT1
--------->
ATHB12
<-----------
RAV1(2)
--------->
DAG2
====
<-------
TEIL
<-------
TEIL
--------->
MYB52(1)
<---
<------
ZmHOX2a(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<----
<---------
TOE2(3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
---------->
DOF2
-----
------>
ZmHOX2a(1)
--------->
ZAT6
<---------
ANAC55(2)
<---------
ARR14(2)
<-------
TEIL
--
aagtcctaaggatggattcattgacaagagtaactctagggttcatcaggtgactaacaggcaaaaggcaaataccctagacaatagattcaaaaccaga
4748800
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AGI:
At4g07935.1
Description:
transposable element gene. gypsy-like retrotransposon family, has a 2.4e-86 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Range:
from: 4742553
to: 4748274
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.