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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                <---------ATHB12   <
                                                                               --------->ANAC46    -
                       --------->TOE2(3)                       --------->ARR14(2)               ----
                 --------->YAB1                             --------->ANAC55(2)--------->ANAC58 ----
                <<<<<<<<<ARR2                               <---------ANAC55(2)--------->ANAC58 <---
    --------->At4g35610--------->TOE1(3)   --------->AtLEC2 <---------ANAC46 <---------ALFIN1   ----
----TEIL        <---------ATHB12    ---------->DOF2  --------->At5g28300  --------->ANAC46   -------
---ZAT6    --------->YAB1 ---------->DOF2  <---------ANAC55(2) <---------ARR14(2)   <---------ICU4 -
 
tcatcacagctatatcacaatcaaaaccataaatcacagcaaagtcatgtaaacactgtaactgcgtaatctctaaaaccccactcaacatttccaacaa  2135800
                                                    <---------GLK1(2)
                                                   --------->HSFC1(2)
       <---------LBD16                             <---------HSFC1(2)
     <---------ARR14(2)                           --------->ANAC58
     --------->ARR14(2)                           --------->ANAC58
    XXXXXXXXXXXXXXXXXXXX>MIR165A/B           ------->GAMYB                                        <-
   ----------->HVH21                        <---------MYB52(2)                           <---------ICU4
---------ARR14(2)                           --------->MYB46(3)                        --------->WOX13(1)
-------->ARR14(2)       --------->GLK1(1)   <---------MYB55(2)                      --------->MYB46(3)
----->ANAC58            <---------GLK1(1)  ------>MYB83                            --------->ANAC58
----->ANAC58         --------->LBD16       ------>MYB46(1)              <---------ANAC58 --------->YAB1
------ANAC55(2)     --------->LBD16       --------->MYB52(1)            <---------ANAC58<---------ATHB12
----->ANAC46       ----------->RAV1(2)   --------->DEAR3(1)  <---------ATHB12      --------->ANAC58
-->MYB46(3)        <---------LBD16      --------->MYB46(3) ----------->RAV1(1)     --------->ANAC46
-------->MYB52(1)------>ZmHOX2a(2)   --------->WRKY38(1)--------->HSFB2a(2)       ------->GAMYB   --
 
cgtaaccggacccggtttgatcccctgaaatctcatctcgttcaccaacgaacaagcttctccaacaattccagcgcgtgagtaacacccaatcatcgca  2135900
                             --------->HSFB2a(2)
                             <---------HSFB2a(2)
                             ------>ZmHOX2a(1)
       <---------ALFIN1  <---------ARR14(2)
       --------->AtMYB61 --------->ARR14(2)
      --------->ANAC46  --------->GLK1(1)                                             --------->YAB1
     ----------->RAV1(1)<---------GLK1(1)                                  --------->ATHB12
   --------->ZAT18  <---------ANAC55(2)                                   <---------YAB1
   --------->ZAT14  --------->ANAC55(2)                                   --------->ICU4
   <---------ZAT18  --------->ANAC58                                    ---------->DOF2
   <---------ZAT14  --------->ANAC58                               <---------ANAC46  <---------ATHB12
--------ZAT14       --------->ANAC46      --------->LBD16      <<<<<<<<<SARD1<---------WOX13(1)
------->ZAT14    ----------->HVH21   <----------DOF2           <<<<<<<<<CBP60g <---------WRKY18(1)
 
gtccagtgcaccacatctctctcacgcatttcctcgaacactttccgagcatgagccaagagtccaaatttcgcataaagattgaccaatgaagatgata  2136000
                                                               <------NtERF2
                                <---------ZAT2                 <----------CDC5      <---------HSFB2a(2)
                                --------->ZAT2                --------->At4g35610   --------->HSFB2a(2)
                            --------->GLK1(2)                <---------DEAR3(1)  <----------DOF2
                      <---------TOE2(3)             ---------->DOF2           --------->ANAC58     -
  <---------GLK1(1)  <---------DOF5.7(2)          --------->AtMYB61           --------->ANAC58   ---
 
tgtagaaatctgaagagaacccattaacgagaacctgctggtgaatcgagagaccaaaagagaggcgctgaagagaagcacaagctttgagaagactagg  2136100
                            <---------ANAC58                       ------>ZmHOX2a(2)
                            <---------ANAC46                   <---------YAB1
          <-----------RAV1(2)                              <---------ANAC46          ----------->GT1
   ---------->DOF2    --------->ATHB12                     <---------ANAC58     <---------YAB1
---------->GT1<--------P    <---------ANAC58               <---------ANAC58  <---------YAB1
------->DOF2<---------ANAC55(2)<---------ZAT2        --------->ARR11(3)      ----------->GT1
 
gaaagtaaaagtatcaggtaagagtttattggcgagcatggaagagaatgttgagagaacttgcttgtgatcgccatgagatgataaatggttaatgtga  2136200
                                                                                               <----
                                                                                           <--------
                                                             ------------>CBF             <---------YAB1
                                        --------->YAB1      --------->YAB1            --------->TOE2(3)
                                       <---------YAB1   <---------YAB1                --------->YAB1
                                    <---------YAB1     ------------>CBF            --------->WOX13(1)
                                 <---------ARR14(2)----------->GT1               ------------>CBF
 
gagttgaagtacttggtggagttcaacacagacgaagttctgatcatagctccatggttacaattacaatgaaatcgtctccatatcaatcttattacag  2136300
                                                                                ------>MYB83
                                                                                ------>MYB46(1)
                                                                              <---------MYB59
                                                                              --------->AtMYB61
          <------------CBF                                            --------->MYB52(1)
        --------->ARR14(3)                                            ------>MYB83
        --------->ARR11(3)                                            ------>MYB46(1)
        --------->ARR14(2)                                          --------->AtMYB61
        <---------ARR11(3)                                          <---------MYB59
        <---------ARR14(3)                                  ------>MYB46(1)  --------->MYB46(3)
        <---------ARR14(2)                        -------->P------>MYB83   ------>MYB46(1)
-------HVH21                           ----------->GT1    <---------MYB59<---------MYB59
---GT1----------->ARR10         --------->ANAC55(2)      --------->MYB46(3)------>MYB83
 
tcacagaagaagatattgtatttgtgtaatggtttacttatcaggtttatatcaacccgaaccaaactaaaccaaaccgaaccaaaccaaaatttcaaac  2136400
                   <-----------GT1
                  <---------YAB1
                <---------ICU4
                --------->YAB1
               <---------YAB1                                                                      <
               --------->ICU4                                                                      =
             --------->YAB1                                                                    -----
             -------->ATHB1                                                  ------>MYB83     <-----
             <---------ICU4                                                  ------>MYB46(1)  ------
             <--------HAHB4                                              ------->TEIL    --------->HSFB2a(1)
             --------->ATHB51                                           <---------ALFIN1 --------->HSFC1(2)
            --------->ICU4                                            --------->RAP2.6(2)<---------HSFC1(2)
        <---------ANAC55(2)                                      --------->AtMYB61       <---------HSFB2a(1)
        --------->ANAC55(2)         ----------->GT1              <---------MYB59        <---------ARR14(2)
      <-----------GT1             <------ZmHOX2a(1) ---------->DOF2------>MYB46(1)      --------->ARR14(2)
  --------->AHL20(2)     <---------LBD16 *TSS    --------->TOE2(3) --------->MYB52(1)--------->ETT(1)
  <---------AHL20(2)  <---------------AGL15      --------->TOE1(3) ------>MYB83     <---------------
 
tatttttaattacgaattattattactcttcggagtaggaggtaactaaaaaccctaaagtcaaaaaaccaaaccgcacctatcgatgtcggaacttcca  2136500
                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
               --------->CCA1(2)
               --------->ARR14(1)
              --------->ARR11(1)
              <---------ARR14(2)
            ----------->ARR10
           <------ZmHOX2a(1)
         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
         <---------ANAC46
    <---------ANAC58
    <---------ANAC58
    <---------ANAC46
 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  --------->DAG2
 --------->GLK1(1)        --------->AtLEC2                      --------->ANAC58
 <---------GLK1(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ANAC58
<---------ARR11(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->ARR14(1)
--------->ARR14(2)  <------ZmHOX2a(2)                        --------->ARR11(1)
--------->ARR11(3) --------->ARR11(3)                        <---------GLK1(2)
<---------ARR14(2) <---------ARR11(3)                        --------->ARR14(2)
------ZmHOX2a(1)<-------TEIL<-----------------AGL3           <---------ARR14(2)
===========================HOX2a_HOX2a                 --------->CCA1(2)                     <xxxxxx
---->LBD16 ================HOX2a_HOX2a       <---------AHL20(2)<-------TEIL                ---------
----HSFB2a(2) --------->ARR14(2)            --------->AHL20(2)--------->CCA1(2)     --------->DAG2 -
--->HSFB2a(2)<---------GLK1(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           ---------->DOF2 <
------WRI1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ANAC46  ---------->DOF2    <---------RAP2.6(3)
 
gaggatatcgtggaggagatacgatctacttgcaaaacatggaaccatttattcaacgatacaagattcgcaaaaaagcacttcgataaagccgtaagac  2136600
               --------->YAB1
              <------ZmHOX2a(2)
             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
xxxxxxxxxxxxxxxxxsmallRNA(si3)                                      --------->At4g35610
>SPL7     <---------TOE1(2)  <---------TOE1(3)--------->TOE2(3)   <-----------RAV1(2)      <--------
-------->ARR11(3)            <---------TOE2(3)<----------DOF2  ----------->HVH21     <---------ICU4
---------ARR11(3) ---------->DOF2     <---------MYB46(3)    ------->TEIL       --------->YAB1    <--
 
aatatctagctctcacgatcacaaaggaatttagggtttatttgttgaactttaatctctatggatgtaacaggtgaacttagcataatcaattctcatt  2136700
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AGI:  At4g04370.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G03580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69656.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 2134058    to: 2136247    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g04375.1   
Description:  pseudogene, hypothetical protein
Range:  from: 2136442    to: 2137563    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.