Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                        <---------ARR14(2)                                                                              <---------AHL20(2)  <--        <---------AtMYB61                                                     --------->AHL20(2)  --- --------->MYB52(1)                                                           <---------AHL20(1)  <-- ---------ARR14(2)                                                            --------->AHL20(1)  <-- -------->ARR14(2)      ------->TEIL                                   ---------->DOF2  --------->ARR14(2) -->ANAC46 --------->ALFIN1                     <---------ICU4    <---------------AGL15 --------->GLK1(2)   aagaaacggagaggtcgagctatatgaatttataccaaaaacacctctaatttttgctagactcaatacccttcaaagaatttattccaaaatccgaatg  1128000           --------->ZAT2           <---------ZAT2                        <----------DOF2                            <--------           <---------At4g35610        ---------->DOF2                                    <---------ANAC58           --------->At4g35610       <---------ATHB12                                    <---------ANAC58 ----->HVH21 <----------DOF2   --------->ANAC46------->TEIL                       ------>MYB83 -------bZIP60(2)             --------->SPL7--------->ANAC58                      ------>MYB46(1) -------->RAV1(2)          --------->AtMYB61--------->ANAC46                     --------->ANAC46 -------ANAC58          <-----------GT1     --------->ANAC58                    --------->MYB46(3) -------ANAC58       <---------CCA1(2)--------->AHL20(2)                        ------->GAMYB   acctgtccctctcagctttgcccatatcaccataccccaataaaacacgaactttagataccaaaaaacatagaaacaataacccaccatttcttgcgca  1128100                                      <---------ARR11(3)        --------->YAB1                                   ------>NtERF2      --------->ARR14(2)                                ------->GAMYB         <---------ARR14(2)                          --------->ANAC46            <---------AGP1                          <---------ANAC58      ----------->HVH21                     <---------AtLEC2 --------->ARR11(3)------>ZmHOX2a(2) <---------DAG2             <--------P   <---------ANAC55(2) <---------At4g35610   --------->DAG2                 --            <---------MYB52(1) --------->MYB46(3)   ------>ZmHOX2a(2)   ------->TEIL              ---           <---------DEAR3(2)  --------->DEAR3(1) <XXXXXXXXXXXXXXXXXXXXMIR842      <---------ARR14(2)         <---------LBD16  --------->ANAC55(2) --------->At4g35610  ---------->DOF2 --------->GLK1(2) -LBD16--------->ANAC46   <---------ANAC58    <---------ZAT2   <---------YAB1      --------->ARR14(2)   aggggattaacgccggtaagtttgcattgcgcaacgacgacatcttggagctgatcgatctggctatgaaaaagcaccttctgcgaatccaatagctcca  1128200                                                          --------->ANAC58                                                          --------->ANAC58                                                         <---------------------WRI1                                                         <------NtERF2                                                        ------>NtERF2                                                        --------->MYB52(1)                                                        <---------ATERF1(1)                                                       --------->At1g77200                                                       --------->DREB2C(2)                                                       --------->RAP2.3(3)                                                       --------->DEAR3(1)                                                       ----------->HVH21                                                      --------->ERF1                                                      --------->RRTF1(1)                                                      <------NtERF2                                                      --------->RAP2.3(1)                                                      --------->ATERF1(1)                                                      --------->DEAR3(2)                                                      --------->ORA47(2)                                                     <---------At4g35610                                                     --------->At4g35610             <---------ZAT2                          <---------ATERF1(1)             --------->At4g35610                     <------NtERF2             --------->ZAT2                          ------>NtERF2             <---------At4g35610                    <---------DEAR3(1)         <---------ANAC55(2)          --------->DEAR3(1)                        --------->DEAR3(1)         --------->ANAC58         --------->ANAC46                           --------->ATERF1(2)        --------->ANAC58       <---------ALFIN1                             --------->RAP2.6(2)        --------->ANAC46      <---------ZAT14           ------>ZmHOX2a(1)   <---------ATERF1(2)     --------->ARR14(2) -------->DOF2       --------->GLK1(1)             <---------RAP2.6(2)      <---------ARR14(2) ------>AHL20(2)  --------->LBD16 --------------------->WRI1              --------->AtMYB61         <   ttaaagactccaccgagctcccgatttctatctcctccttgaacgcgtccatggccgccgacggaaaactcgaagaccaatacgcaaaccgaattcaaaa  1128300                                                                                          -----------                                                                                        --------->ARR14(2)                                                                                        <---------GLK1(2)                                                                                        <---------ARR14(2)                                                                              <---------MYB59                                                                              <---------MYB46(2)                                                                             <---------ANAC55(2)                                                                  --------->YAB1------>MYB46(1)                                                         --------->AHL20(2)  <-----------------AGL1                           <------ZmHOX2a(1)          ----------->GT1        --------->ANAC55(2)      --------->LBD16  --------->TOE1(2)             ----------->GT1------->TEIL------>MYB83     ----    <-----------RAV1(2)--------->TOE2(2)            <---------------------WRI1--------->TOE2(3) ----- -------TEIL--------->AHL20(2)               --------->ALFIN1    <---------ATHB12   <---------LBD16 -   tgtgcatcagggaattaaactgaaacgtaggactcagtgattcgaatgtgttgaaacgataaattcaatgaacatggttacctaatttcggattgtcaaa  1128400                                                                                          <------NtERF2    --------->GLK1(2)                                                            ----------->TBP   <---------ARR14(2)        --------->ANAC58                                    <---------YAB1   --------->ARR14(2)        --------->ANAC58                   <----------DOF2--------->YAB1   <---------GLK1(2)         ----------->GT1                    --------------->AGL15     <---------At4g35610 >GT1     <--------P *TSS <------ZmHOX2a(1)       ----------->GT1    ---------->DOF2  --------->ANAC58 ----->DAG2  <---------TOE1(3)        --------->DAG2         <-----------GT1   --------->AHL20(2)  <- ----->DOF2  <---------TOE2(3)       ---------->DOF2--------->AHL20(2) ----------->GT1--------->ANAC46 ---------------->AGL1  <---------TOE2(3)       ---------->DOF2 <---------------AGL15 --------->ANAC58   aagccgattcgggttagggtttgagtaaggaaggcaaaataaaggggcataaaagtaaataagttactttacaaagaaaaattataaaacgcagcgtctt  1128500               ----------->GT1              --------->DAG2            ---------->DOF2      ------>ZmHOX2a(2)     <------ZmHOX2a(2)                                                         <---------AHL20(2)     <<<<<<<<<GATA-4                                                          --------->AHL20(2)     <<<<<<<<<GATA-3                                                          <---------AHL20(2)     <<<<<<<<<GATA-1                                                       <---------ICU4     <---------GLK1(1)                            <---------ARR11(3)      <---------ATHB51     <<<<<<<<<GATA-2      --------->AHL20(2)      --------->AHL20(1)      <---------AHL20(2)    --------->ARR11(3)    --------->AHL20(1)      --------->ARR11(3)      --------->AHL20(2)    <---------ARR11(3)    <---------AHL20(2)      --------->AHL20(2)      --------->ICU4    --------->ARR14(2)    <---------AHL20(1)      <---------AHL20(1)    --------->YAB1    <---------AGP1 --------->ANAC58     <---------YAB1                --------->AHL20(2)    <---------ARR14(2)   --------->AHL20(2)       <---------AHL20(2) --------->YAB1                 -   <---------CCA1(2)     <---------AHL20(2)<---------YAB1           --------->AHL20(2)            --- --------REM1(1)   --------->ANAC58    --------->AHL20(2)       --------->AHL20(2)           --------   gatgtagatctctgaaaaggtaagaaattaaatttgtttaatattatactaatatattagttgacataaaataaaaataattaaatctataagacctgaa  1128600                                               <---------ZAT18                                              --------->DEAR3(1)                                            <---------At5g28300                                           <-----------GT1                                       <----------DOF2                                    --------->ARR11(3)                                    <---------ARR11(3)                                   <---------GLK1(1)                                   <---------CCA1(1)                                   <---------RVE1(1)                                   --------->RVE1(1)                                   --------->CCA1(1)                                   --------->GLK1(1)                                  --------->ARR11(3)                                              ---                                  <---------ARR11(3)  <---------YAB1    <----------DOF2         <---- -------->YAB1                ------>ZmHOX2a(1)------>NtERF2      <---------CCA1(2)       <---------DAG2 ------>AHL20(2)              --------->LBD16--------->MYB46(3) --------->O2              <----------DOF2 --->GT1              *TSS  ----------->RAV1(2)--------->ABI4(1)<---------O2         <-----------GT1   aataatagaatagaagagaacgagtttgtttcctgagatatcttttcaccgcccttctcataggtctcgtctctctttctctctattttacgcttttttc  1128700                                                                  --------->ARR14(2)                                                                --------->DEAR3(1)                                                         <-----------ARR10                                                        --------->ZAT2                                                        --------->At4g35610                                                     --------->At4g35610           --------->GLK1(2)                                                     <---------At4g35610           <---------ARR14(2)                                                     <---------ZAT2   ------>ZmHOX2a(1)     --------->GLK1(2)                               --------->ZAT2<------ZmHOX2a(2)    <---------GLK1(2)                            ============================HOX2a_HOX2a     <------- --->ZmHOX2a(1)    <---------GLK1(2)             ------>ZmHOX2a(2)<---------ARR14(2)        --------- -----LBD16      <---------YAB1         <----------DOF2 <---------At4g35610   <---------LBD16<-------   ctgaacgattcttagggttttgattctctctctctctcgcttctttttcgatcgcagcagctctcgccgatcctgtgtaatcgggaatcggtaatcgtca  1128800                    ------>NtERF2                   --------->ANAC58                   --------->ANAC58                  --------->ATERF1(1)                  <------NtERF2                 <---------ATERF1(1)                 ------>NtERF2                --------->DEAR3(1)                ----------->HVH21                <---------DEAR3(1)              <------ZmHOX2a(2)             <---------DEAR3(1)                <---------ARR14(2)            <-------TEIL                       <---------ARR11(3)            --------->SPL7            <---------TOE1(3)                           <---------TOE1(2)           --------->ALFIN1           <---------TOE2(3)    <-----------GT1       <---------ANAC58         <---------ANAC58          <---------YAB1          --------->ZAT6        <---------ANAC58        <---------------AtSPL3   --------->ATHB12------>ZmHOX2a(2)        <---------GLK1(2)       ---        <---------------AtSPL8   <---------ICU4--------->ARR14(3)         --------->ARR14(2)     ----    <---------MYB52(1)          <---------YAB1 --------->ARR14(2)         <---------ARR14(2)     ---- ----TGA1<---------ANAC58       --------->ICU4 --------->ARR11(3)      --------->ETT(1)          ---- >YAB1 <---------ANAC46      <---------YAB1    <---------ARR14(3)      <---------ANAC46          ---- ----HVH21<---------SPL7<----------DOF2        <---------AGP1       <-----------RAV1(1)         -----   gggtctgtttggggtacggcgacgcgattttctgattattagggtttaagatctcgaggtatcactatttctgtcggattctcgcttgttttgttccata  1128900  Previous    Next  AGI:  At4g02560.1    Description:  LD (LUMINIDEPENDENS); transcription factor. Identical to Homeobox protein LUMINIDEPENDENS (LD) [Arabidopsis Thaliana] (GB:Q58T20;GB:Q9C5Z9); similar to unnamed protein product [Vitis vinifera] (GB:CAO22394.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 1123490    to: 1128421    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02570.1    Description:  ATCUL1 (CULLIN 1). Identical to Cullin-1 (CUL1) [Arabidopsis Thaliana] (GB:Q94AH6;GB:O22770;GB:Q56W31); similar to CUL2 (cullin 2), ubiquitin protein ligase binding [Arabidopsis thaliana] (TAIR:AT1G02980.1); similar to cullin-like protein1 [Pisum sativum] (GB:BAC10548.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70971.1); similar to cullin 1-like protein C [Petunia inflata] (GB:ABB77428.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Cullin homology; (InterPro:IPR016158); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain C Range:  from: 1128622    to: 1133696    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.