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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
DAG2
---------->
DOF2
----------->
HVH21
<---------
At4g35610
<xxxxxxxxxxxxxxxx
smallRNA(le3)
<-------
TEIL
--------->
At4g35610
----------->
GT1
<---------
ANAC58
----------->
RAV1(2)
--------->
DAG2
<---------
ANAC58
--------->
ARR14(2)
---------->
DOF2
---------->
DOF2
<---------
ARR11(3)
<---------
ARR14(2)
<------
ZmHOX2a(1)
<---------
AtLEC2
--------->
ARR11(3)
---------->
DOF2
---------->
DOF2
--------
tgatgcatggaaaaggttcatac
cgaagagcttgaggtctccatcttcaaaggctggaacctgaccaaaagg
ctgaagaggaaagaagttcaaacacaaa
1111300
--------->
LBD16
<---------
LBD16
<-------
TEIL
<---------
ANAC58
--------->
CCA1(2)
<---------
ANAC58
--------->
ARR14(2)
<---------
ANAC58
<---------
ARR14(2)
--------->
CCA1(2)
--------->
ANAC58
<---------
ARR11(3)
--------
--------->
ANAC58
--------->
CCA1(2)
<---------
ANAC46
<-------
TEIL
<---------
ARR11(3)
<---------
ANAC58
<---------
At4g35610
<------
MYB83
--------->
ARR11(3)
<---------
LBD16
-
--------->
At4g35610
<------
MYB46(1)
----------->
RAV1(1)
<---------
TOE2(3)
<xxxxxxx
->
ANAC46
--------->
ANAC46
<---------
MYB52(1)
--------->
MYB46(3)
--------->
ARR11(3)
<------
ZmHOX2a(1)
acatttgagatgcaggccagatacatgaaaacagttggtctcttgtcttacaacaacacatagatatatagatatacttac
gttgcgggagaggaaaggc
1111400
--------->
DEAR3(1)
<----
--------->
At4g35610
-----
<---------
At4g35610
<----------
CDC5
<----
--------------------->
WRI1
<---------
DEAR3(1)
<------
NtERF2
<
->
DAG2
<---------
ZAT18
<---------
DEAR3(1)
------>
ZmHOX2a(1)
<
----->
ZmHOX2a(1)
<----------
DOF2
---------->
DOF2
<---------
ANAC46
----------->
RAV1(2)
<
xxxxxxxxxxx
smallRNA(le3)
--------->
At4g35610
<---------
ANAC46
<------
ZmHOX2a(1)
-----
tccttcttgtgctcaccgtctttgagttcgacatgaacgagctcaaagtcgaggtttttctcgtggagggcgatgaggactctcctggtggcaatggaag
1111500
<---------
SPL7
-----
ZAT2
---->
ZAT2
--------->
ATHB12
-----
At4g35610
------>
MYB46(1)
---------
ANAC46
------>
MYB83
---------
ANAC58
--------->
ANAC46
---------->
DOF2
<------
---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
----------->
GT1
-------
---->
At4g35610
<-----------
GT1
<----------
DOF2
---------->
DOF2
<------
ZmHOX2a(1)
<
ctgggtgtccgaaaactttgatacctgccat
tgatttgggttactaagaaactctttgaagactgagaaaaaagagagaaaagaggaagaaatgtgatgt
1111600
<---------
AHL20(2)
<---------
ARR11(3)
<---------
TOE2(3)
--------->
ICU4
--------->
ICU4
--------->
ANAC58
<---------
TOE2(3)
--------->
ANAC46
<---------
YAB1
---
YAB1
--------->
ANAC55(1)
<---------
YAB1
-->
ICU4
--------->
ALFIN1
--------->
ANAC58
*
TSS
<----------
DOF2
-
---------
TOE2(3)
--------->
ANAC46
--------->
ARR11(3)
<-----------
GT1
--------
ttgatgttgaaggtgaaggtgatgaaataagacacaagtaatgaaggtatttatacagaa
gcatttctactttctcattaatgtttaatattatctaaca
1111700
--------->
At4g35610
--------->
ARR14(2)
<---------
ARR14(2)
<------------
CBF
<---------
ARR11(3)
---------
<---------
ICU4
<---------
ICU4
--------->
ARR11(3)
<---------
TOE2(3)
-------->
HAHB4
--------->
MYB46(3)
<------
ZmHOX2a(1)
<---------
TOE1(3)
--------->
YAB1
------------>
CBF
<---------
HSFB2a(2)
<---------
DOF5.7(2)
--------->
ICU4
--------->
ANAC58
--------->
HSFB2a(2)
<-----------
GT1
-------->
YAB1
--------->
ANAC58
<---------
LBD16
<---------
At4g35610
--------->
TOE2(3)
->
MYB52(1)
<---------
REM1(2)
--------->
YAB1
<<<<<<<<<
TBF1
---------->
DOF2
----------->
GT1
<----
gataataatgcctctacaaggccatcgcaaccaatattgactagtcttcttcttctgggaggatttttcaaagctgaattggactgtttaacgtttaaat
1111800
<---------
ANAC46
--------->
ANAC55(2)
<---------
ANAC58
<----------
DOF2
--------->
DAG2
--------->
YAB1
<---------
ANAC58
---------->
DOF2
<------
ZmHOX2a(2)
<---------
ANAC58
<---------
AHL20(2)
--------->
ARR11(3)
>
AHL20(2)
<---------
MYB46(3)
--------->
YAB1
---------->
DOF2
<---------
ANAC58
<---------
ATHB12
-----
AHL20(2)
<---------
ANAC55(2)
------->
TEIL
<---------
ARR11(3)
<----------
ID1
atttgcttttacattggttatgtaatggtttttaataaagtattcaatgtatcagagaaaagatcataactagtgcgtagtaataggccaaatgactcaa
1111900
--------->
REM1(1)
--------->
HSFB2a(2)
<-------
TEIL
<---------
LBD16
-------->
P
<---------
ANAC46
------>
MYB46(1)
<---------
MYB52(1)
------>
MYB83
<------
MYB46(1)
<---------
ARR14(2)
<---------
MYB46(2)
<------
MYB83
--------->
LBD16
<---------
ARR11(3)
<---------
MYB111(1)
<----------
DOF2
--------->
MYB59
--------->
ARR14(2)
<---------
MYB111(2)
<---------
ANAC58
--------->
ATHB12
<---------
LBD16
--------->
ARR14(2)
<---------
ALFIN1
<---------
ANAC58
<---------
YAB1
<---------
LBD16
<---------
CCA1(2)
acttccacctactagcttcatctagtagctttcccccttcttggttatgactggttcggttttgtttcggggattttgtgatgctctatatctgtatgcc
1112000
<----------
DOF2
<---------
RVE1(1)
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
AGP1
<---------
AGP1
<---------
ARR11(3)
--------->
ARR11(3)
<---------
GLK1(1)
<----------
ID1
<---------
CCA1(2)
---------->
DOF2
<-------
TEIL
<---------
TOE2(3)
------>
ZmHOX2a(2)
---------->
DOF2
----------->
GT1
--------->
GLK1(2)
----------->
ARR10
<-----------
GT1
ttctcaagttaaaagggtttctcttaatgtgagattcaatagaacaaaggtttactgatcagatctttttgaattagtttcagataaataaccaaagaag
1112100
<----------
DOF2
<---------
ANAC58
<---------
ANAC46
<---------
ANAC46
<---------
AtMYB61
--------->
TOE2(3)
---
<---------
ANAC58
--------->
ALFIN1
------->
TEIL
<---
----------->
GT1
<---------
ANAC46
-------->
P
--------->
ICU4
------
<---------
AtMYB61
<---------
AtMYB61
----------->
GT1
--------->
ARR11(3)
-----------
ttttggtatggtttcttggttccttttggtgtggtggaat
tcgatggaaaaatcaaccttgttgatattgatgcatagtaagtatgaacaaaatgtataa
1112200
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AGI:
At4g02520.1
Description:
ATGSTF2 (Arabidopsis thaliana Glutathione S-transferase (class phi) 2); glutathione transferase. Identical to Glutathione S-transferase PM24 (PM24.1) [Arabidopsis Thaliana] (GB:P46422); similar to ATGSTF3 (GLUTATHIONE S-TRANSFERASE 16), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G02930.1); similar to glutathione S-transferase 4 [Brassica juncea] (GB:AAP58394.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, C-terminal-like (InterPro:IPR010987); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Glutathione S-transfera
Range:
from: 1110452
to: 1111660
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g02530.1
Description:
chloroplast thylakoid lumen protein. Identical to Thylakoid lumenal 16.5 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O22773;GB:Q8L985;GB:Q94BU6;GB:Q9M110); similar to unnamed protein product [Vitis vinifera] (GB:CAO65696.1)
Range:
from: 1112141
to: 1114029
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.