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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
YAB1
--------->
AHL20(2)
--------->
TOE2(3)
-------->
ATHB1
<---------
ICU4
--------->
ATHB12
>>>>>>>>>
ARR2
--------->
YAB1
-------->
DAG2
--------->
ATHB12
<----------
DOF2
<---------
AHL20(2)
<---------
AtLEC2
-------->
DOF2
<---------
YAB1
<---------
DAG2
<---------
YAB1
<----------
DOF2
--
TEIL
<---------
DAG2
--------->
ATHB12
<--------
HAHB4
<---------
DAG2
<---
-->
CCA1(2)
<-----------
GT1
<---------
YAB1
<---------
ATHB12
<-----------
GT1
--------->
AHL20(2)
aaaaagaggcatataaccttttgattgtatatgatttgaaaactttttcttgaatcattaaaatagcttaattaccttttgcataaataaactaaaatta
22390400
<---------
ARR11(3)
<---------
ARR11(1)
--------->
ARR14(2)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ICU4
--------->
YAB1
<--------
ATHB1
--------->
ATHB51
<--------
HAHB4
--------->
TOE1(3)
<---------
ATHB12
<---------
ATHB51
<---------
ICU4
<---------
DAG2
<-------
TEIL
<---------
CCA1(2)
--------->
YAB1
--------->
ZAT6
--------
GT1
--------->
ICU4
--------->
TOE2(3)
------>
ZmHOX2a(1)
<-----------
GT1
tacgattttagatgcaataattaattccaaatcttaaaacatcatttcctcataagtcataaccttttaacttacacttgtaattttgttcaacatggat
22390500
--------->
TOE1(2)
--------->
ANAC55(2)
--------->
AHL20(2)
<---------
ANAC55(2)
--------->
GLK1(2)
------->
TEIL
--------->
ARR14(2)
<-------
TEIL
<---------
ARR14(2)
--------->
SPL7
<---------
ARR11(1)
--------->
SPL1(1)
------->
TEIL
<---------
SPL7
<---------
ARR14(1)
<---------
ANAC58
<---------
GLK1(2)
------>
MYB83
------>
ZmHOX2a(2)
-------->
P
<------
ZmHOX2a(2)
<---------
ATHB12
<---------
ANAC58
--------->
CCA1(2)
------>
MYB46(1)
--------->
MYB46(3)
<---------
ARR14(2)
------>
MYB83
<---------
MYB46(2)
--------->
AGP1
--------->
ICU4
<---------
ICU4
--------->
MYB52(1)
<-----------
GT1
--------->
ARR14(2)
<---------
MYB111(1)
------>
MYB46(1)
<---------
AHL20(2)
--------->
GLK1(1)
<---------
MYB59
<---------
MYB59
<---------
AHL20(2)
<---------
GLK1(1)
--------->
ANAC55(2)
--------->
MYB55(1)
--------->
AHL20(2)
------->
TEIL
----------->
ARR10
<-----------
GT1
----------->
HVH21
------->
TEIL
----------->
GT1
tactgagatccgaatctgaaatatttatacctaatcaatactctgacctaccgtacgtatgaaactgtatttaaattgttactacatgaacatgatatag
22390600
<---------
YAB1
<---
--------->
TOE2(3)
----
<---------
ICU4
<----
--------->
YAB1
------>
MYB83
--------->
ATHB12
<--------
<--------
HAHB4
<--------
<--------
P
----------------->
AGL3
<--------
--------->
AHL20(2)
<---------
YAB1
<---------
YAB1
--------->
ANAC55(2)
<---------
TOE2(3)
<---------
TOE2(2)
<---------
ATHB12
<---------
TOE2(3)
<-----------
GT1
<---------
TOE2(3)
--------->
DAG2
<--------------
--------->
YAB1
--------->
ANAC58
---------->
DOF2
<--------------
<---------
YAB1
--------->
ANAC58
--------->
AHL20(2)
--------->
MYB52(1)
------>
MYB46(1)
<---------
AHL20(2)
--------->
ANAC46
<---------
AHL20(2)
---------->
DOF2
---------------
--------->
AHL20(2)
--------->
ANAC46
--------->
MYB46(3)
--------->
ICU4
---------------
aactatttttataacgatataatacacacgaaggttagtaagattaacaaacatttaaataaagtaatcattaaaagaaacgacgatgaaggtacctaat
22390700
--------->
TOE2(3)
------
ICU4
----->
YAB1
-----
ATHB12
-
MYB59
--------->
TOE2(3)
-
MYB111(1)
--------->
TOE1(3)
-
MYB46(2)
----------->
TBP
-
AtSPL3
----------->
GT1
-
AtSPL8
<---------
ANAC46
*
TSS
>
AtSPL3
<---------
ANAC58
<-----------
HVH21
--------->
WRKY38(1)
>
AtSPL8
<---------
ANAC58
<----------
DOF2
------>
ZmHOX2a(1)
<
cgttacattagaaggcttgtatataaaacctcaacaaaacctctccctttcacttcatcacttcaagtcttctcttcct
cgttgatcaaacattttcaag
22390800
<---------
ICU4
--------->
ARR11(3)
<---------
LBD16
--------->
HSFC1(2)
--------->
HSFB2a(1)
<---------
HSFB2a(1)
--------->
TOE2(3)
<---------
HSFC1(2)
<---------------------
WRI1
<---------
ARR14(2)
--------->
YAB1
--------->
LBD16
--------->
ARR14(2)
--------->
YAB1
------>
NtERF2
<------
ZmHOX2a(1)
<----------
DOF2
<---------
LBD16
<-----------
GT1
=======================
HOX2a_HOX2a
--
<---------
LBD16
<----------
DOF2
--------->
HSFB2a(2)
------>
ZmHOX2a(2)
--
----------
DOF2
<---------
MYB52(1)
--------->
LBD16
<---------
ARR11(3)
--
tactttccggcgaaacatca
atggccgtttcgaattctttaacaatctctccgaggaaactccggtctgatctttactcatactcataccaaaacaattc
22390900
<---
<---
<----
-----
-----
<----
------
<-----
<------
<------
------>
NtERF2
<------
<------
---------
---------
---------
---------
---------
------>
NtERF2
<---------
ATERF1(1)
<---------
RAP2.3(1)
--------->
LBD16
--------->
ANAC46
<---------
DEAR3(1)
<---------
LBD16
<----------
DOF2
<------
--------->
ARR11(3)
<-------
==============================
HOX2a_HOX2a
<---------
ANAC58
-
<---------
WOX13(1)
<---------
ARR11(3)
--------
--------->
ATHB12
<------
NtERF2
=============
------->
ANAC46
<-----------
TGA1
--------->
ANAC58
--------->
LBD16
=============
------->
ANAC58
<-----------
HVH21
--------->
ANAC58
<---------
LBD16
------>
ZmHOX2a(1)
------->
ANAC58
--------->
YAB1
------>
ZmHOX2a(2)
<------
ZmHOX2a(1)
<---------
ANAC58
<--
caagacacctctggttatctctgttctatcgtcactgattgatcgaactctgactcgaaacgagaggattagccggagagctttgccttcctccggcgcc
22391000
<------
NtERF2
------
ATERF1(1)
------
DEAR3(2)
-----
ATERF1(2)
---->
ATERF1(2)
--------->
LBD16
---->
DEAR3(1)
------>
NtERF2
-----
DEAR3(1)
--------->
LBD16
---------->
DOF2
--->
ATERF1(1)
<---------
WOX13(1)
--------->
ANAC46
-
NtERF2
<---------
ANAC58
--------->
ZAT6
---
RAP2.6(1)
<---------
ANAC58
--------->
ZAT14
---
RAP2.3(1)
--------->
ATHB12
<-------
TEIL
---
RRTF1(1)
<----------
DOF2
<---------
ZAT14
---
ATERF1(1)
------>
ZmHOX2a(2)
<---------
ZAT18
>
ERF1
--------->
AGP1
<---------
MYB52(1)
>
RAP2.6(1)
--------->
ARR14(2)
--------->
LBD16
>
RRTF1(1)
<---------
AGP1
--------->
HSFB2a(2)
>
ATERF1(1)
<---------
ARR14(2)
<---------
HSFB2a(2)
>
RAP2.3(1)
<---------
ARR11(3)
--------------->
AtSPL8
---
ERF1
----------->
ARR10
<---------
GLK1(1)
<---------
LBD16
--
DEAR3(1)
--------->
ARR11(3)
--------->
YAB1
<-----------
GT1
----->
NtERF2
<------
ZmHOX2a(2)
<---------
ATHB12
<---------
HSFC1(2)
->
DEAR3(1)
<---------
CCA1(2)
--------->
GLK1(1)
------>
MYB46(1)
<---------
HSFB2a(1)
====================
HOX2a_HOX2a
------>
MYB83
--------->
HSFC1(2)
<---
===================
HOX2a_HOX2a
<-----------
GT1
<---------
KAN4(2)
------>
ZmHOX2a(1)
-------
MYB52(1)
<---------
YAB1
--------->
LBD16
<-----------
HVH21
--------->
HSFB2a(1)
<---------
MYB52(1)
ggtggcaaaactcagatctttgattgccgagaaatccctgatatgaccatccagtcatacctagggagaattttccggtacactaaagccggtccttcgg
22391100
--------->
ETT(2)
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
<------
NtERF2
<---------
RAP2.6(2)
<
--------->
ALFIN1
--------->
LBD16
----
<---------
ANAC46
--------->
ARR14(2)
<---
--------->
ANAC55(2)
<---------
ARR14(2)
--------->
LBD16
-----
<---------
ANAC58
<---------
WRKY18(1)
<---------
LBD16
-------
<---------
ANAC55(1)
--------->
WRKY12
------>
MYB46(1)
<---------
ICU4
<---------
ANAC58
----------->
HVH21
--------->
AtMYB61
------->
TEIL
--------->
YAB1
--
<---------
ANAC55(2)
--------->
WRKY38(1)
------>
MYB83
<---------
TOE2(3)
--------->
ZAT6
-------
DOF2
<---------
ETT(2)
<-----------
HVH21
--------->
GLK1(2)
<-------
TEIL
<---------
ICU4
<-
tttacgtggtggcttatgtctacattgaccggttctgtcaaaccaatcccggttttagaatcagtctcactaatgtacatcgtctactcatcactaccat
22391200
------>
ZmHOX2a(2)
---------
ICU4
----->
YAB1
--------->
YAB1
------
ICU4
<---------
ARR14(2)
<---------
TOE2(3)
---->
ICU4
--------->
ARR11(3)
<---------
TOE1(3)
-->
YAB1
--------->
ARR14(2)
<---------
YAB1
------->
ICU4
<---------
ARR11(3)
---------->
DOF2
<-----------
GT1
<-----
--------
YAB1
<-------
TEIL
--------->
GLK1(2)
<-----------
GT1
--------->
ANAC55(2)
<-------
TEIL
catgatcgcttctaaatacgtcgaagattt
gtaagtatctaataaaaacttcaatttaaccaaaaaagtcttacatatttttctatttaagattcatttt
22391300
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AGI:
At3g60550.1
Description:
CYCP3;2 (cyclin p3;2); cyclin-dependent protein kinase. Identical to Cyclin-U2-2 (CYCU2-2) [Arabidopsis Thaliana] (GB:Q9M205); similar to CYCP3,1 (cyclin p3,1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G45080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70609.1); contains InterPro domain Cyclin-related 2 (InterPro:IPR013922); contains InterPro domain Cyclin-like (InterPro:IPR011028); contains InterPro domain Negative regulatory factor PREG (InterPro:IPR012389)
Range:
from: 22390780
to: 22391616
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.