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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-------
--------
--------
<-------
TEIL
--------->
CCA1(2)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ARR11(1)
----------->
ARR10
--------->
GLK1(2)
<--------
P
<------
ZmHOX2a(1)
--------->
LBD16
--------->
At4g35610
<---------
ANAC58
--------->
LBD16
--------->
LBD16
<-----------
RAV1(2)
<---------
ANAC58
--------->
HSFB2a(2)
<---------
LBD16
<---------
At4g35610
------>
ZmHOX2a(1)
<---------
At4g35610
<-----------
ARR10
<-----------
HVH21
<---------
ARR14(2)
--------->
At4g35610
--------->
TOE2(3)
<---------
MYB52(1)
<-------
TEIL
<---------
YAB1
<----------
DOF2
<---------
HSFB2a(2)
--------->
ARR14(2)
<
cgatgcatcagaggagttatgaagaatcctagcgagtctcttttgtctgctactccagaaattcttcacatcgttatcagttcttcccggtagatacgta
22354100
--------->
At4g35610
<---------
ZAT2
<---------
At4g35610
----------->
GT1
--------->
ZAT2
------>
MYB46(1)
<---------
ZAT18
--------->
GLK1(2)
------>
MYB83
--------->
ZAT14
--------->
ARR11(3)
--
ANAC55(2)
<---------
MYB46(2)
--------->
YAB1
<-----------
RAV1(2)
->
ANAC46
<-----------
GT1
<---------
ATHB12
<-----------
HVH21
->
ANAC55(2)
<---------
MYB46(3)
<-----------
GT1
------>
ZmHOX2a(1)
<---------
ARR11(3)
--
---------
GLK1(2)
<---------
MYB59
--------->
WOX13(1)
<-----------
TGA1
--------->
MYB46(3)
--
gcgattctcgcccatttgttaccaaactcagattgtaactcaatcacagtcctctcttcgtcagccgagaacttgcatcca
ctataaacaaacacaaaaa
22354200
<------
ZmHOX2a(1)
----------->
GT1
---------->
DOF2
<----------
DOF2
------->
TOE1(3)
----------->
RAV1(1)
<---------
DAG2
------->
TOE2(3)
<----------
ID1
----------->
GT1
<---------
TOE2(3)
accctaaatttgaagcaaacaaaaccaaaattgaatttgcagagagagagcaacaaagagaaggagaaaaatgtatac
tttttgagattgggacggagtt
22354300
<-------
GAMYB
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
<-------
TEIL
<-------
PIF5
<---------
MYB52(1)
--------->
YAB1
------->
PIF5
<---------
ATHB12
<---------
DEAR3(2)
--------->
WOX13(1)
--------->
ATERF1(2)
--------->
GLK1(1)
<---------
DEAR3(1)
=============================
HOX2a_HOX2a
<---------
ATERF1(2)
------>
ZmHOX2a(2)
<------
ZmHOX2a(1)
<----
--------->
ANAC46
--------->
ABI4(2)
XXXXXXXXXXXXXXXXXXXX>
MIR319C
----------->
HVH21
------>
MYB83
<---------
DREB2C(2)
XXXXXXXXXXXXXXXXXXXX>
MIR319A/B
<---------
CCA1(2)
--------->
MYB52(1)
<---------
LBD16
XXXXXXXXXXXXXXXXXXXX>
MIR159A
------->
TEIL
<-----
------>
MYB46(1)
--------->
ARR14(2)
XXXXXXXXXXXXXXXXXXXX>
MIR159B
--------->
ARR14(2)
<---------
MYB55(2)
<---------
GLK1(1)
XXXXXXXXXXXXXXXXXXXX>
MIR159C
<---------
ARR14(2)
--------->
MYB46(3)
--------->
GLK1(1)
<----------
DOF2
--------->
At4g35610
<---------
ARR11(1)
--------->
ANAC46
<---------
ARR14(2)
<---------
ARR11(3)
<---------
At4g35610
<---------
CCA1(2)
<-----------
GT1
<------
ZmHOX2a(1)
--------->
ARR11(3)
<---------
GLK1(1)
<---------
ARR14(1)
tattgacccaacgaagacgacaggatttgccggtgcgttgaagaagacctttggatcgaatggagctccaatcacgaggaccgtatctcttgacatggtt
22354400
<----------
DOF2
------->
TEIL
--------->
GLK1(1)
------>
ZmHOX2a(2)
<
-----
MYB46(3)
<----------
DOF2
<----------
DOF2
======================
HOX2a_HOX2a
---
P
---------->
ID1
<---------
AtLEC2
------>
ZmHOX2a(1)
<--------
gatgagtacttcgtcttcttcggctttccatggacctttctttatctcttccttcttcgcttccat
tttcctcatcgctaatcgatctctctctcgattt
22354500
<-------
GAMYB
<---------
ANAC46
<------
MYB46(1)
<------
MYB83
<--------
P
<----------
DOF2
<-------
GAMYB
<---------
HSFB2a(1)
<---------
DEAR3(2)
--------->
HSFC1(2)
--------->
MYB55(2)
--------->
HSFB2a(1)
<---------
MYB46(3)
--------->
LBD16
<---------
RAP2.6(2)
--------->
ZAT18
<---------
ANAC58
<---------
LBD16
<---------
DEAR3(1)
--------->
At4g35610
<---------
DREB2C(2)
--------->
ALFIN1
<---------
ANAC46
--------->
ANAC46
<---------
ANAC58
<---------
ANAC58
----------->
RAV1(1)
--
---------->
ID1
<---------
ANAC58
------------>
AtMYB77
<---------
ALFIN1
--
------------------------
ANAC81
<---------
HSFC1(2)
--------->
ALFIN1
--------->
MYB46(3)
<-------
----------------
ANAC81
<---------
ANAC46
<-----------
TBP
<---------
MYB46(3)
<---------
YAB1
<----
tgtgtttttgttcttctctgtttttgtgtgcggaagtttctttgggttttgtagtggcggttggatgcggttatcacccacattaccattaccctccact
22354600
<---------
ALFIN1
<---------
ALFIN1
<---------
ZAT18
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
--------->
SPL7
----------->
HVH21
------------->
AtSPL8
---------->
DOF2
--------->
YAB1
------------->
AtSPL3
<---------
MYB59
<---------
YAB1
<-----
--
ALFIN1
--------->
ANAC46
<-----------
GT1
----------->
GT1
<--------
------
DOF2
<---------
TOE2(3)
----------->
RAV1(2)
---------->
DOF2
ttcagtaccccactccccaagtttctctcgcatttcgaatttgatgttattaccaaaatgcccctgatgttgtaattagaattacaaagcccaaatcatg
22354700
--------->
HSFB2a(2)
------>
ZmHOX2a(2)
<---------
HSFB2a(1)
<---------
GLK1(1)
<------
ZmHOX2a(2)
--------->
ARR11(3)
--------->
ARR14(2)
--------->
ARR14(3)
<---------
ARR14(3)
<---------
ARR11(3)
----------->
GT1
<---------
ARR14(2)
--------->
REM1(2)
<---------
ARR14(2)
<-----------
ARR10
<---------
ANAC46
--------->
ARR14(2)
----------->
HVH21
<---------
ZAT2
<-------
TEIL
<---------
ANAC46
---
----
ANAC55(2)
------->
MYC3
--------->
AHL20(2)
<---------
HSFB2a(2)
<--
-
ATHB12
--------->
LBD16
<-------
MYC3
----------->
GT1
<------
ZmHOX2a(1)
---------->
DOF2
tgagccagcccgtgtaaggccctctatttcacatgcatatatggtggaaaaaaatgatgtgaaggatcttcgagactcgagagccttgaaagttgaaact
22354800
<---------
ZAT2
<-----
<---------
At4g35610
<------
--------->
ZAT2
---------
--------->
At4g35610
<--------
<------
ZmHOX2a(1)
<---------
ICU4
<-----------
GT1
--------->
ANAC46
--------->
YAB1
------->
TEIL
<-----------
GT1
--------->
ICU4
------>
ANAC55(2)
<---------
At5g28300
<---------
ICU4
---------->
DOF2
--------->
YAB1
-------
ANAC55(2)
<-----------
GT1
--------->
GLK1(2)
<---------------------
WRI1
----------->
GT1
acgtatttagataccgtattttacagcaaatgtagaaagaatcaatttttacaggacagctgtccaaacaaaggccagacaaactcagtaataatcagga
22354900
<------
MYB83
<------
MYB46(1)
--------->
MYB59
------->
TEIL
--------->
AHL20(2)
-
ZmHOX2a(1)
<---------
AHL20(2)
---
YAB1
<---------
At5g28300
<----------
ID1
<---------
AHL20(2)
>
YAB1
--------->
ATHB12
<------
ZmHOX2a(1)
--------->
AHL20(2)
--------->
MYB46(3)
-
ICU4
<----------
DOF2
<----------
DOF2
---------->
DOF2
<------
ZmHOX2a(1)
<---------
AHL20(2)
tagtatatgactttgcacattgaattctttattggacatttaccgaaaggaaggagggaggagacaaatttttaaataaatgaatttggtaaaccactaa
22355000
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AGI:
At3g60460.1
Description:
DUO1 (DUO POLLEN 1); DNA binding / transcription factor. similar to MYB97 (myb domain protein 97), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G26930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70568.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778)
Range:
from: 22353404
to: 22354466
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.